The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Actin; Chain A, domain 2
".
FunFam 5: Actin-like protein 6B
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 3 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
29 |
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
Q99MR0 (/IPI)
(19 more) |
Transcription coactivator activity GO:0003713
A protein or a member of a complex that interacts specifically and non-covalently with a DNA-bound DNA-binding transcription factor to activate the transcription of specific genes. Coactivators often act by altering chromatin structure and modifications. For example, one class of transcription coregulators modifies chromatin structure through covalent modification of histones. A second ATP-dependent class modifies the conformation of chromatin. Another type of coregulator activity is the bridging of a DNA-binding transcription factor to the basal transcription machinery. The Mediator complex, which bridges transcription factors and RNA polymerase, is also a transcription coactivator.
|
16 |
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
(6 more) |
Structural constituent of cytoskeleton GO:0005200
The action of a molecule that contributes to the structural integrity of a cytoskeletal structure.
|
16 |
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
O94805 (/TAS)
(6 more) |
There are 7 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Chromatin assembly or disassembly GO:0006333
The formation or destruction of chromatin structures.
|
29 |
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
Q99MR0 (/IC)
(19 more) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
29 |
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
(19 more) |
Nervous system development GO:0007399
The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
|
29 |
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
Q99MR0 (/IMP)
(19 more) |
Spinal cord development GO:0021510
The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.
|
29 |
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
P86173 (/IEP)
(19 more) |
Chromatin organization GO:0006325
Any process that results in the specification, formation or maintenance of the physical structure of eukaryotic chromatin.
|
16 |
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
(6 more) |
Chromatin remodeling GO:0006338
Dynamic structural changes to eukaryotic chromatin occurring throughout the cell division cycle. These changes range from the local changes necessary for transcriptional regulation to global changes necessary for chromosome segregation.
|
16 |
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
(6 more) |
Regulation of transcription by RNA polymerase II GO:0006357
Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
|
16 |
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
O94805 (/NAS)
(6 more) |
There are 9 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
NBAF complex GO:0071565
A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
|
74 |
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
A4FUX8 (/ISS)
(64 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
45 |
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
(35 more) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
45 |
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
(35 more) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
29 |
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
(19 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
29 |
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
(19 more) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
29 |
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
Q99MR0 (/ISO)
(19 more) |
NBAF complex GO:0071565
A SWI/SNF-type complex that is found in post-mitotic neurons, and in human contains actin and proteins encoded by the ARID1A/BAF250A or ARID1B/BAF250B, SMARCD1/BAF60A, SMARCD3/BAF60C, SMARCA2/BRM/BAF190B, SMARCA4/BRG1/BAF190A, SMARCB1/BAF47, SMARCC1/BAF155, SMARCE1/BAF57, SMARCC2/BAF170, DPF1/BAF45B, DPF3/BAF45C, ACTL6B/BAF53B genes. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.
|
29 |
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
Q99MR0 (/IDA)
(19 more) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
16 |
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
O94805 (/IDA)
(6 more) |
SWI/SNF complex GO:0016514
A SWI/SNF-type complex that contains 8 to 14 proteins, including both conserved (core) and nonconserved components; contains the ATPase product of the yeast SNF2 or mammalian SMARCA4/BAF190A/BRG1 gene, or an ortholog thereof.
|
16 |
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
O94805 (/ISS)
(6 more) |