The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Leucine-rich Repeat Variant
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 39: Splicing factor 3B subunit 1

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 4 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
48 O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI) O75533 (/IPI)
(38 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
47 O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA) O75533 (/HDA)
(37 more)
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
1 Q99NB9 (/IDA)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
1 Q9VPR5 (/ISS)

There are 18 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
48 O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC) O75533 (/IC)
(38 more)
RNA splicing, via transesterification reactions GO:0000375
Splicing of RNA via a series of two transesterification reactions.
47 O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS)
(37 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
47 O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS)
(37 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
47 O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS)
(37 more)
Positive regulation of gene expression, epigenetic GO:0045815
Any epigenetic process that activates or increases the rate of gene expression.
47 O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS)
(37 more)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
1 Q99NB9 (/IMP)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
1 Q99NB9 (/ISO)
MRNA splicing, via spliceosome GO:0000398
The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced.
1 Q9VPR5 (/ISS)
Blastocyst formation GO:0001825
The initial formation of a blastocyst from a solid ball of cells known as a morula.
1 Q99NB9 (/IMP)
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
1 Q99NB9 (/IGI)
Neural crest cell development GO:0014032
The process aimed at the progression of a neural crest cell over time, from initial commitment of the cell to its specific fate, to the fully functional differentiated cell.
1 Q6DRD6 (/IMP)
Melanocyte differentiation GO:0030318
The process in which a relatively unspecialized cell acquires specialized features of a melanocyte.
1 Q6DRD6 (/IGI)
Melanocyte differentiation GO:0030318
The process in which a relatively unspecialized cell acquires specialized features of a melanocyte.
1 Q6DRD6 (/IMP)
Regulation of apoptotic process GO:0042981
Any process that modulates the occurrence or rate of cell death by apoptotic process.
1 Q6DRD6 (/IGI)
Definitive hemopoiesis GO:0060216
A second wave of blood cell production that, in vertebrates, generates long-term hemopoietic stem cells that continously provide erythroid, myeloid and lymphoid lineages throughout adulthood.
1 Q6DRD6 (/IMP)
Hematopoietic stem cell differentiation GO:0060218
The process in which a relatively unspecialized cell acquires specialized features of a hematopoietic stem cell. A stem cell is a cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells.
1 Q6DRD6 (/IMP)
Myeloid cell development GO:0061515
The process whose specific outcome is the progression of a myeloid cell over time, from its formation to the mature structure.
1 Q6DRD6 (/IMP)

There are 23 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
95 G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA) G3V7T6 (/IDA)
(85 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
47 O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS) O75533 (/TAS)
(37 more)
Spliceosomal complex GO:0005681
Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA.
47 O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS) O75533 (/NAS)
(37 more)
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
U11/U12 snRNP GO:0034693
A ribonucleoprotein complex formed by the association of the U11 and U12 small nuclear ribonucleoproteins.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
47 O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA) O75533 (/IDA)
(37 more)
Chromatin GO:0000785
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
1 Q99NB9 (/IDA)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q99NB9 (/ISO)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
1 Q99NB9 (/ISS)
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
1 Q99NB9 (/ISO)
U2 snRNP GO:0005686
A ribonucleoprotein complex that contains small nuclear RNA U2.
1 Q9VPR5 (/ISS)
U12-type spliceosomal complex GO:0005689
Any spliceosomal complex that forms during the splicing of a messenger RNA primary transcript to excise an intron; the series of U12-type spliceosomal complexes is involved in the splicing of the majority of introns that contain atypical AT-AC terminal dinucleotides, as well as other non-canonical introns. The entire splice site signal, not just the terminal dinucleotides, is involved in determining which spliceosome utilizes the site.
1 Q99NB9 (/ISO)
Nuclear matrix GO:0016363
The dense fibrillar network lying on the inner side of the nuclear membrane.
1 Q99NB9 (/IDA)
Nuclear speck GO:0016607
A discrete extra-nucleolar subnuclear domain, 20-50 in number, in which splicing factors are seen to be localized by immunofluorescence microscopy.
1 Q99NB9 (/ISO)
Small nuclear ribonucleoprotein complex GO:0030532
A complex composed of RNA of the small nuclear RNA (snRNA) class and protein, found in the nucleus of a eukaryotic cell. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP or U4/U6 snRNP. Many, but not all, of these complexes are involved in splicing of nuclear mRNAs.
1 Q99NB9 (/IDA)
U11/U12 snRNP GO:0034693
A ribonucleoprotein complex formed by the association of the U11 and U12 small nuclear ribonucleoproteins.
1 Q99NB9 (/ISO)
U2-type precatalytic spliceosome GO:0071005
A spliceosomal complex that is formed by the recruitment of the preassembled U4/U6.U5 tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the U1, U2 and U4/U6.U5 snRNPs.
1 Q99NB9 (/ISO)
Precatalytic spliceosome GO:0071011
A spliceosomal complex that is formed by the recruitment of a preassembled U5-containing tri-snRNP to the prespliceosome. Although all 5 snRNPs are present, the precatalytic spliceosome is catalytically inactive. The precatalytic spliceosome includes many proteins in addition to those found in the associated snRNPs.
1 Q9VPR5 (/HDA)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
1 Q9VPR5 (/HDA)
Catalytic step 2 spliceosome GO:0071013
A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
1 Q99NB9 (/ISO)
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