CATH Superfamily 1.20.58.1020
The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.
FunFam 1: DNA replication complex GINS protein PSF2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 2 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
17 |
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
(7 more) |
Chromatin binding GO:0003682
Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase.
|
2 | Q7ZT46 (/IDA) Q7ZT46 (/IDA) |
There are 14 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Double-strand break repair via break-induced replication GO:0000727
The error-free repair of a double-strand break in DNA in which the centromere-proximal end of a broken chromosome searches for a homologous region in an intact chromosome. DNA synthesis initiates from the 3' end of the invading DNA strand, using the intact chromosome as the template, and progresses to the end of the chromosome.
|
10 | P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) |
DNA-dependent DNA replication GO:0006261
A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
|
10 | P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) P40359 (/IGI) |
DNA-dependent DNA replication GO:0006261
A DNA replication process that uses parental DNA as a template for the DNA-dependent DNA polymerases that synthesize the new strands.
|
10 | P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) P40359 (/IMP) |
DNA strand elongation involved in DNA replication GO:0006271
The process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication.
|
4 | Q9Y248 (/TAS) Q9Y248 (/TAS) Q9Y248 (/TAS) Q9Y248 (/TAS) |
DNA strand elongation involved in DNA replication GO:0006271
The process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication.
|
3 | Q9VQY9 (/ISS) Q9VQY9 (/ISS) Q9VQY9 (/ISS) |
Chromosome condensation GO:0030261
The progressive compaction of dispersed interphase chromatin into threadlike chromosomes prior to mitotic or meiotic nuclear division, or during apoptosis, in eukaryotic cells.
|
3 | Q9VQY9 (/IMP) Q9VQY9 (/IMP) Q9VQY9 (/IMP) |
Regulation of DNA-templated transcription, elongation GO:0032784
Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
|
3 | Q9VQY9 (/ISS) Q9VQY9 (/ISS) Q9VQY9 (/ISS) |
Positive regulation of G1/S transition of mitotic cell cycle GO:1900087
Any signalling pathway that increases or activates a cell cycle cyclin-dependent protein kinase to modulate the switch from G1 phase to S phase of the mitotic cell cycle.
|
3 | Q9VQY9 (/IMP) Q9VQY9 (/IMP) Q9VQY9 (/IMP) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
2 | Q7ZT46 (/IMP) Q7ZT46 (/IMP) |
DNA strand elongation involved in DNA replication GO:0006271
The process in which an existing DNA strand is extended by activities including the addition of nucleotides to the 3' end of the strand, complementary to an existing template, as part of DNA replication.
|
2 | Q7ZT46 (/IDA) Q7ZT46 (/IDA) |
Regulation of DNA-templated transcription, elongation GO:0032784
Any process that modulates the frequency, rate or extent of transcription elongation, the extension of an RNA molecule after transcription initiation and promoter clearance by the addition of ribonucleotides catalyzed by a DNA-dependent RNA polymerase.
|
2 | Q7ZT46 (/IDA) Q7ZT46 (/IDA) |
DNA replication GO:0006260
The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
|
1 | Q54BL9 (/ISS) |
Mitotic DNA replication GO:1902969
Any nuclear DNA replication that is involved in a mitotic cell cycle.
|
1 | O94329 (/IMP) |
Mitotic DNA replication initiation GO:1902975
Any DNA replication initiation involved in mitotic cell cycle DNA replication.
|
1 | O94329 (/TAS) |
There are 15 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
13 |
O94329 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
P40359 (/IDA)
(3 more) |
GINS complex GO:0000811
A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
|
12 |
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
P40359 (/IPI)
(2 more) |
DNA replication preinitiation complex GO:0031261
A protein-DNA complex assembled at eukaryotic DNA replication origins immediately prior to the initiation of DNA replication. The preinitiation complex is formed by the assembly of additional proteins onto an existing prereplicative complex. In budding yeast, the additional proteins might include Cdc45p, Sld2p, Sld3p, Dpb11p, DNA polymerases, and others; in fission yeast the GINS complex is present.
|
10 | P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) P40359 (/IPI) |
Replication fork protection complex GO:0031298
A protein complex conserved in eukaryotes and associated with the replication fork; the complex stabilizes stalled replication forks and is thought to be involved in coordinating leading- and lagging-strand synthesis and in replication checkpoint signaling.
|
10 | P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) |
Nuclear replication fork GO:0043596
The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.
|
10 | P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) |
CMG complex GO:0071162
A protein complex that contains the GINS complex, Cdc45p, and the heterohexameric MCM complex, and that is involved in unwinding DNA during replication.
|
10 | P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) P40359 (/IDA) |
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
|
6 | Q7ZT46 (/TAS) Q7ZT46 (/TAS) Q9Y248 (/TAS) Q9Y248 (/TAS) Q9Y248 (/TAS) Q9Y248 (/TAS) |
GINS complex GO:0000811
A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
|
3 | Q9VQY9 (/IDA) Q9VQY9 (/IDA) Q9VQY9 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
3 | Q9VQY9 (/ISS) Q9VQY9 (/ISS) Q9VQY9 (/ISS) |
Nuclear chromatin GO:0000790
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome in the nucleus.
|
1 | O94329 (/IDA) |
GINS complex GO:0000811
A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
|
1 | O94329 (/ISO) |
GINS complex GO:0000811
A heterotetrameric protein complex that associates with replication origins, where it is required for the initiation of DNA replication, and with replication forks.
|
1 | Q54BL9 (/ISS) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | O94329 (/HDA) |
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
|
1 | O94329 (/HDA) |
Nuclear replication fork GO:0043596
The Y-shaped region of a nuclear replicating DNA molecule, resulting from the separation of the DNA strands and in which the synthesis of new strands takes place. Also includes associated protein complexes.
|
1 | O94329 (/IC) |