View in Gene3D

CATH Superfamily 1.20.5.390

L1 transposable element, trimerization domain

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
L1 transposable element, trimerization domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Superfamily: L1 transposable element, trimerization domain

According to the literature, members of the structural domains which comprise this superfamily correspond to a conserved component in the protein ORF1 of the long interspersed nuclear element 1 (LINE-1 or L1) retrotransposon. This domain is annotated in InterPro as a trimerization domain (INTERPRO:IPR035301) and it corresponds to an N-terminal, ion-containing coiled coil that serves as scaffold for the flexible attachment of the central RRM and the C-terminal domains PMID:21822284

GO Diversity

Unique GO annotations
160 Unique GO terms

EC Diversity

Unique EC annotations
0 Unique EC terms

Species Diversity

Unique species annotations
715 Unique species

Sequence/Structure Diversity

Overview of the sequence / structure diversity of this superfamily compared to other superfamilies in CATH. Click on the chart to view the data in more detail.

Superfamily Summary

A general summary of information for this superfamily.
Structures
Domains: 23
Domain clusters (>95% seq id): 7
Domain clusters (>35% seq id): 6
Unique PDBs: 10
Alignments
Structural Clusters (5A): 2
Structural Clusters (9A): 1
FunFam Clusters: 16
Function
Unique EC:
Unique GO: 160
Taxonomy
Unique Species: 715