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CATH Superfamily 1.20.1250.40

RNA Polymerase II, Rpb4 subunit

The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was: waiting to be named.

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.

Browse Functional Families

ID Function Family (FunFam) Name Total Sequences Enzyme? Structure? Structural Representative PDB Sites? Alignment Diversity (0-100)
1
DNA-directed RNA polymerase II subunit RPB4
211
3D
 5iydD00 - 74.3
2
DNA-directed RNA polymerase III subunit RPC9
95 - - 92.0
3
DNA-directed RNA polymerase II subunit rpb4
85
3D
 3h0gP00 - 76.5
4
Dna-directed rna polymerase ii subunit 4
82 - - 64.5
7
DNA-directed RNA polymerase II subunit RPB4
68
3D
 5u5qD02 - 36.8
5
DNA-directed RNA polymerase III subunit RPC9 isoform X5
23 - - 10.4
6
DNA-directed RNA polymerase II 16 kDa subunit, putative
17 - - 2.6
8
RNA polymerase II, Rpb4, core protein
16 - - 75.3
9
Dna-directed rna polymerase ii subunit rpb4-like
14 - - 10.0
10
RNA Polymerase II
B
10 - - 70.9
11
RNA polymerase C
10 - - 14.7
12
Unplaced genomic scaffold supercont1.20, whole genome shotgun sequence
9 - - 10.1
13
RNA_polymerase_Rpb4
9 - - 12.2
14
RNA polymerase II Rpb4 core protein
8 - - 44.8
15
Uncharacterized protein
8 - - 17.8
16
Uncharacterized protein
7 - - 5.0
17
DNA-directed RNA polymerase II subunit RPB4
6 - - 3.9
19
Related to Rpb4-16 kD subunit of DNA-directed RNA polymerase II
5 - - 15.2
18
WGS project CABT00000000 data, contig 2.3
5 - - 5.2
20
DNA-directed RNA polymerase III subunit rpc9
4 - - 50.2
21
DNA-directed RNA polymerase III subunit, putative
3 - - 5.0
29
RNA polymerase Rpb4-domain-containing protein
2 - - 3.7
22
DNA-directed RNA polymerase III subunit rpc9
2 - - 25.2
33
Uncharacterized protein
2 - - 0.0
26
Uncharacterized protein
2 - - 7.5
25
Uncharacterized protein
2 - - 11.7
32
DNA-directed RNA polymerase II subunit
2 - - 1.6
31
DNA-directed RNA polymerases II subunit, putative
2 - - 0.0
23
Predicted protein
2 - - 5.4
27
HRDC-like protein
2 - - 0.0
28
AaceriAGR317Cp
2 - - 5.8
34
Uncharacterized protein
2 - - 0.0
24
DNA-directed RNA polymerases IV and V subunit 4
2 - - 12.1
30
Uncharacterized protein
2 - - 0.0
43
Uncharacterized protein
1 - - 0.0
39
Protein CBG03003
1 - - 0.0
48
Uncharacterized protein
1 - - 0.0
35
Uncharacterized protein
1 - - 0.0
46
Peptide-receptor component
1 - - 0.0
36
Uncharacterized protein
1 - - 0.0
44
Uncharacterized protein
1 - - 0.0
38
Uncharacterized protein
1 - - 0.0
45
Uncharacterized protein
1 - - 0.0
42
Uncharacterized protein
1 - - 0.0
40
Uncharacterized protein
1 - - 0.0
47
Uncharacterized protein
1 - - 0.0
37
Uncharacterized protein
1 - - 0.0
41
DNA-directed RNA polymerase II subunit D
1 - - 0.0