The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
YojJ-like
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 3: acid-sensing ion channel 1 isoform X2

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 13 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
14 P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI) P78348 (/IPI)
(4 more)
Acid-sensing ion channel activity GO:0044736
Enables the transmembrane transfer of a sodium ion by a neuronal, voltage-insensitive channel that opens when an extracellular proton has been bound by the channel complex.
14 P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA)
(4 more)
Acid-sensing ion channel activity GO:0044736
Enables the transmembrane transfer of a sodium ion by a neuronal, voltage-insensitive channel that opens when an extracellular proton has been bound by the channel complex.
14 P55926 (/ISS) P55926 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS)
(4 more)
Ligand-gated sodium channel activity GO:0015280
Enables the transmembrane transfer of a sodium ion by a channel that opens when a specific ligand has been bound by the channel complex or one of its constituent parts.
11 P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS)
(1 more)
Ion channel activity GO:0005216
Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
2 P55926 (/IDA) P55926 (/IDA)
Identical protein binding GO:0042802
Interacting selectively and non-covalently with an identical protein or proteins.
2 Q1XA76 (/IPI) Q1XA76 (/IPI)
Ion channel activity GO:0005216
Enables the facilitated diffusion of an ion (by an energy-independent process) by passage through a transmembrane aqueous pore or channel without evidence for a carrier-mediated mechanism. May be either selective (it enables passage of a specific ion only) or non-selective (it enables passage of two or more ions of same charge but different size).
1 Q6NXK8 (/ISO)
Cation channel activity GO:0005261
Enables the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
1 Q6NXK8 (/IDA)
Cation channel activity GO:0005261
Enables the energy-independent passage of cations across a lipid bilayer down a concentration gradient.
1 Q6NXK8 (/IMP)
Monovalent inorganic cation transmembrane transporter activity GO:0015077
Enables the transfer of a inorganic cations with a valency of one from one side of a membrane to the other. Inorganic cations are atoms or small molecules with a positive charge that do not contain carbon in covalent linkage.
1 Q6NXK8 (/ISO)
Ion gated channel activity GO:0022839
Enables the transmembrane transfer of a solute by a channel that opens in response to a specific ion stimulus.
1 Q6NXK8 (/IDA)
Ion gated channel activity GO:0022839
Enables the transmembrane transfer of a solute by a channel that opens in response to a specific ion stimulus.
1 Q6NXK8 (/IMP)
Acid-sensing ion channel activity GO:0044736
Enables the transmembrane transfer of a sodium ion by a neuronal, voltage-insensitive channel that opens when an extracellular proton has been bound by the channel complex.
1 Q6NXK8 (/ISO)

There are 30 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Sodium ion transmembrane transport GO:0035725
A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
14 P55926 (/ISS) P55926 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS)
(4 more)
Protein homotrimerization GO:0070207
The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.
14 P55926 (/ISS) P55926 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS)
(4 more)
Sodium ion transmembrane transport GO:0035725
A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
13 P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA)
(3 more)
Cellular response to pH GO:0071467
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution.
13 P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA)
(3 more)
Sodium ion transport GO:0006814
The directed movement of sodium ions (Na+) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
11 P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS) P78348 (/NAS)
(1 more)
Signal transduction GO:0007165
The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
11 P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS)
(1 more)
Response to pH GO:0009268
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution.
11 P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS)
(1 more)
Ion transmembrane transport GO:0034220
A process in which an ion is transported across a membrane.
11 P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS)
(1 more)
Sensory perception of sour taste GO:0050915
The series of events required to receive a sour taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
11 P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP)
(1 more)
Ion transmembrane transport GO:0034220
A process in which an ion is transported across a membrane.
3 P55926 (/IMP) P55926 (/IMP) Q6NXK8 (/IMP)
Cellular response to pH GO:0071467
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution.
3 P55926 (/ISS) P55926 (/ISS) Q6NXK8 (/ISS)
Sensory perception of pain GO:0019233
The series of events required for an organism to receive a painful stimulus, convert it to a molecular signal, and recognize and characterize the signal. Pain is medically defined as the physical sensation of discomfort or distress caused by injury or illness, so can hence be described as a harmful stimulus which signals current (or impending) tissue damage. Pain may come from extremes of temperature, mechanical damage, electricity or from noxious chemical substances. This is a neurological process.
2 P55926 (/NAS) P55926 (/NAS)
Protein homotrimerization GO:0070207
The formation of a protein homotrimer, a macromolecular structure consisting of three noncovalently associated identical subunits.
2 Q1XA76 (/IDA) Q1XA76 (/IDA)
Behavioral fear response GO:0001662
An acute behavioral change resulting from a perceived external threat.
1 Q6NXK8 (/IMP)
Response to amphetamine GO:0001975
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an amphetamine stimulus. Amphetamines consist of a group of compounds related to alpha-methylphenethylamine.
1 Q6NXK8 (/IMP)
Cation transport GO:0006812
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 Q6NXK8 (/IDA)
Cation transport GO:0006812
The directed movement of cations, atoms or small molecules with a net positive charge, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
1 Q6NXK8 (/IMP)
Memory GO:0007613
The activities involved in the mental information processing system that receives (registers), modifies, stores, and retrieves informational stimuli. The main stages involved in the formation and retrieval of memory are encoding (processing of received information by acquisition), storage (building a permanent record of received information as a result of consolidation) and retrieval (calling back the stored information and use it in a suitable way to execute a given task).
1 Q6NXK8 (/IMP)
Associative learning GO:0008306
Learning by associating a stimulus (the cause) with a particular outcome (the effect).
1 Q6NXK8 (/IMP)
Response to acidic pH GO:0010447
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
1 Q6NXK8 (/IDA)
Response to acidic pH GO:0010447
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus with pH < 7. pH is a measure of the acidity or basicity of an aqueous solution.
1 Q6NXK8 (/IMP)
Monovalent inorganic cation transport GO:0015672
The directed movement of inorganic cations with a valency of one into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Inorganic cations are atoms or small molecules with a positive charge which do not contain carbon in covalent linkage.
1 Q6NXK8 (/ISO)
Ion transmembrane transport GO:0034220
A process in which an ion is transported across a membrane.
1 Q6NXK8 (/IDA)
Ion transmembrane transport GO:0034220
A process in which an ion is transported across a membrane.
1 Q6NXK8 (/ISO)
Sodium ion transmembrane transport GO:0035725
A process in which a sodium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
1 Q6NXK8 (/ISO)
Regulation of membrane potential GO:0042391
Any process that modulates the establishment or extent of a membrane potential, the electric potential existing across any membrane arising from charges in the membrane itself and from the charges present in the media on either side of the membrane.
1 Q6NXK8 (/IMP)
Negative regulation of neurotransmitter secretion GO:0046929
Any process that stops, prevents, or reduces the frequency, rate or extent of the regulated release of a neurotransmitter.
1 Q6NXK8 (/IMP)
Sensory perception of sour taste GO:0050915
The series of events required to receive a sour taste stimulus, convert it to a molecular signal, and recognize and characterize the signal. This is a neurological process.
1 Q6NXK8 (/ISO)
Calcium ion transmembrane transport GO:0070588
A process in which a calcium ion is transported from one side of a membrane to the other by means of some agent such as a transporter or pore.
1 Q6NXK8 (/IMP)
Cellular response to pH GO:0071467
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a pH stimulus. pH is a measure of the acidity or basicity of an aqueous solution.
1 Q6NXK8 (/ISO)

There are 17 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Integral component of plasma membrane GO:0005887
The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
13 P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP) P78348 (/IMP)
(3 more)
Integral component of plasma membrane GO:0005887
The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
13 P55926 (/ISS) P55926 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS) P78348 (/ISS)
(3 more)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
11 P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA)
(1 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
11 P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA) P78348 (/IDA)
(1 more)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
11 P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS)
(1 more)
Integral component of plasma membrane GO:0005887
The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
11 P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS) P78348 (/TAS)
(1 more)
Cell surface GO:0009986
The external part of the cell wall and/or plasma membrane.
2 P55926 (/IDA) P55926 (/IDA)
Golgi apparatus GO:0005794
A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
1 Q6NXK8 (/ISO)
Plasma membrane GO:0005886
The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
1 Q6NXK8 (/ISO)
Integral component of plasma membrane GO:0005887
The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
1 Q6NXK8 (/IDA)
Integral component of plasma membrane GO:0005887
The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
1 Q6NXK8 (/ISO)
Cell surface GO:0009986
The external part of the cell wall and/or plasma membrane.
1 Q6NXK8 (/ISO)
Integral component of membrane GO:0016021
The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
1 Q6NXK8 (/ISO)
Dendritic spine GO:0043197
A small, membranous protrusion from a dendrite that forms a postsynaptic compartment - typically receiving input from a single presynapse. They function as partially isolated biochemical and an electrical compartments. Spine morphology is variable including \thin\, \stubby\, \mushroom\, and \branched\, with a continuum of intermediate morphologies. They typically terminate in a bulb shape, linked to the dendritic shaft by a restriction. Spine remodeling is though to be involved in synaptic plasticity.
1 Q6NXK8 (/ISO)
Dendritic shaft GO:0043198
Cylindric portion of the dendrite, directly stemming from the perikaryon, and carrying the dendritic spines.
1 Q6NXK8 (/ISO)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
1 Q6NXK8 (/IDA)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
1 Q6NXK8 (/ISO)
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