The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"Homeodomain-like
".
FunFam 81: Empty spiracles homeobox 2
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 6 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
|
28 |
Q04741 (/IPI)
Q04742 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
Q04743 (/IPI)
(18 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
27 |
Q04741 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
Q04743 (/ISA)
(17 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
27 |
Q04741 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
Q04743 (/ISM)
(17 more) |
DNA-binding transcription factor activity, RNA polymerase II-specific GO:0000981
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a RNA polymerase II-transcribed gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units.
|
26 |
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
Q04743 (/NAS)
(16 more) |
RNA polymerase II regulatory region sequence-specific DNA binding GO:0000977
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls the transcription of a gene or cistron by RNA polymerase II.
|
1 | P18488 (/IDA) |
RNA polymerase II distal enhancer sequence-specific DNA binding GO:0000980
Interacting selectively and non-covalently with a RNA polymerase II (Pol II) distal enhancer. In mammalian cells, enhancers are distal sequences that increase the utilization of some promoters, and can function in either orientation and in any location (upstream or downstream) relative to the core promoter.
|
1 | P18488 (/IDA) |
Showing 1 to 6 of 6 entries
There are 41 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Brain development GO:0007420
The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
|
18 |
P18488 (/IMP)
Q04742 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
(8 more) |
Regulation of gene expression GO:0010468
Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
|
17 |
P18488 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
(7 more) |
Cerebral cortex regionalization GO:0021796
The regionalization process that results in the creation of areas within the cerebral cortex that will direct the behavior of cell migration and differentiation as the cortex develops.
|
17 |
Q04742 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
(7 more) |
Cerebral cortex development GO:0021987
The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
|
17 |
Q04742 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
(7 more) |
Neuron differentiation GO:0030182
The process in which a relatively unspecialized cell acquires specialized features of a neuron.
|
17 |
Q04742 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
(7 more) |
Response to drug GO:0042493
Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
|
17 |
Q04742 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
Q04744 (/IDA)
(7 more) |
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
|
16 |
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
Q04744 (/IGI)
(6 more) |
Anterior/posterior pattern specification GO:0009952
The regionalization process in which specific areas of cell differentiation are determined along the anterior-posterior axis. The anterior-posterior axis is defined by a line that runs from the head or mouth of an organism to the tail or opposite end of the organism.
|
16 |
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
(6 more) |
Dentate gyrus development GO:0021542
The process whose specific outcome is the progression of the dentate gyrus over time, from its formation to the mature structure. The dentate gyrus is one of two interlocking gyri of the hippocampus. It contains granule cells, which project to the pyramidal cells and interneurons of the CA3 region of the ammon gyrus.
|
16 |
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
(6 more) |
Cerebral cortex regionalization GO:0021796
The regionalization process that results in the creation of areas within the cerebral cortex that will direct the behavior of cell migration and differentiation as the cortex develops.
|
16 |
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
Q04744 (/IMP)
(6 more) |
Showing 1 to 10 of 41 entries
There are 4 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
GO Term | Annotations | Evidence |
---|---|---|
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
4 | G5ECT8 (/IDA) P18488 (/IDA) Q04741 (/IDA) Q04742 (/IDA) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
3 | F8W1B5 (/IDA) F8W1B5 (/IDA) Q04741 (/IDA) |
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
|
1 | Q04742 (/ISO) |
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
|
1 | Q04742 (/ISO) |
Showing 1 to 4 of 4 entries