The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:

"
Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain
".

Functional Families

Overview of the Structural Clusters (SC) and Functional Families within this CATH Superfamily. Clusters with a representative structure are represented by a filled circle.
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FunFam 166: 40S ribosomal protein S25

Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.

There are 5 GO terms relating to "molecular function"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
49 P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA)
(39 more)
RNA binding GO:0003723
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
49 P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS)
(39 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
49 P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP)
(39 more)
Structural constituent of ribosome GO:0003735
The action of a molecule that contributes to the structural integrity of the ribosome.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Protein binding GO:0005515
Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
49 P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI) P62851 (/IPI)
(39 more)

There are 9 GO terms relating to "biological process"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
49 P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP) P62853 (/IMP)
(39 more)
Ribosomal small subunit assembly GO:0000028
The aggregation, arrangement and bonding together of constituent RNAs and proteins to form the small ribosomal subunit.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Nuclear-transcribed mRNA catabolic process, nonsense-mediated decay GO:0000184
The nonsense-mediated decay pathway for nuclear-transcribed mRNAs degrades mRNAs in which an amino-acid codon has changed to a nonsense codon; this prevents the translation of such mRNAs into truncated, and potentially harmful, proteins.
49 P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS)
(39 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
49 P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC) P62851 (/IC)
(39 more)
Translation GO:0006412
The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
49 P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS)
(39 more)
Translational initiation GO:0006413
The process preceding formation of the peptide bond between the first two amino acids of a protein. This includes the formation of a complex of the ribosome, mRNA or circRNA, and an initiation complex that contains the first aminoacyl-tRNA.
49 P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS)
(39 more)
SRP-dependent cotranslational protein targeting to membrane GO:0006614
The targeting of proteins to a membrane that occurs during translation and is dependent upon two key components, the signal-recognition particle (SRP) and the SRP receptor. SRP is a cytosolic particle that transiently binds to the endoplasmic reticulum (ER) signal sequence in a nascent protein, to the large ribosomal unit, and to the SRP receptor in the ER membrane.
49 P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS)
(39 more)
Viral transcription GO:0019083
The process by which a viral genome, or part of a viral genome, is transcribed within the host cell.
49 P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS)
(39 more)
Cellular response to amino acid starvation GO:0034198
Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of amino acids.
49 P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP) P62853 (/IEP)
(39 more)

There are 22 GO terms relating to "cellular component"

The search results have been sorted with the annotations that are found most frequently at the top of the list. The results can be filtered by typing text into the search box at the top of the table.
GO Term Annotations Evidence
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
98 P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA)
(88 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
98 P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA)
(88 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
49 P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA)
(39 more)
Nucleus GO:0005634
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Nucleoplasm GO:0005654
That part of the nuclear content other than the chromosomes or the nucleolus.
49 P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS)
(39 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
49 P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA)
(39 more)
Nucleolus GO:0005730
A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Cytosol GO:0005829
The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
49 P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS) P62851 (/TAS)
(39 more)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
49 P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA)
(39 more)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Ribosome GO:0005840
An intracellular organelle, about 200 A in diameter, consisting of RNA and protein. It is the site of protein biosynthesis resulting from translation of messenger RNA (mRNA). It consists of two subunits, one large and one small, each containing only protein and RNA. Both the ribosome and its subunits are characterized by their sedimentation coefficients, expressed in Svedberg units (symbol: S). Hence, the prokaryotic ribosome (70S) comprises a large (50S) subunit and a small (30S) subunit, while the eukaryotic ribosome (80S) comprises a large (60S) subunit and a small (40S) subunit. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). Ribosomes from prokaryotes, eukaryotes, mitochondria, and chloroplasts have characteristically distinct ribosomal proteins.
49 P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS) P62851 (/NAS)
(39 more)
Polysome GO:0005844
A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.
49 P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA) P62853 (/IDA)
(39 more)
Polysome GO:0005844
A multiribosomal structure representing a linear array of ribosomes held together by messenger RNA. They represent the active complexes in cellular protein synthesis and are able to incorporate amino acids into polypeptides both in vivo and in vitro.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
49 P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP) P62851 (/EXP)
(39 more)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
49 P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA) P62851 (/IDA)
(39 more)
Postsynaptic density GO:0014069
An electron dense network of proteins within and adjacent to the postsynaptic membrane of an asymmetric, neuron-neuron synapse. Its major components include neurotransmitter receptors and the proteins that spatially and functionally organize them such as anchoring and scaffolding molecules, signaling enzymes and cytoskeletal components.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Small ribosomal subunit GO:0015935
The smaller of the two subunits of a ribosome.
49 P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA)
(39 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
49 P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA)
(39 more)
Cytosolic small ribosomal subunit GO:0022627
The small subunit of a ribosome located in the cytosol.
49 P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO) P62852 (/ISO)
(39 more)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
49 P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP) P62852 (/EXP)
(39 more)
Synapse GO:0045202
The junction between a nerve fiber of one neuron and another neuron, muscle fiber or glial cell. As the nerve fiber approaches the synapse it enlarges into a specialized structure, the presynaptic nerve ending, which contains mitochondria and synaptic vesicles. At the tip of the nerve ending is the presynaptic membrane; facing it, and separated from it by a minute cleft (the synaptic cleft) is a specialized area of membrane on the receiving cell, known as the postsynaptic membrane. In response to the arrival of nerve impulses, the presynaptic nerve ending secretes molecules of neurotransmitters into the synaptic cleft. These diffuse across the cleft and transmit the signal to the postsynaptic membrane.
49 P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA) P62852 (/IDA)
(39 more)
Extracellular exosome GO:0070062
A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
49 P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA) P62851 (/HDA)
(39 more)
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