# STOCKHOLM 1.0
#=GF ID 3.40.50.11530/FF/000007
#=GF DE adapter protein CIKS isoform X3
#=GF AC 3.40.50.11530/FF/000007
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 92.903
#=GS Q6IR26/27-179       AC Q6IR26
#=GS Q6IR26/27-179       OS Mus musculus
#=GS Q6IR26/27-179       DE Traf3ip2 protein
#=GS Q6IR26/27-179       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q6IR26/27-179       DR GO; GO:0001783; GO:0002230; GO:0006959; GO:0048305; 
#=GS A7T023/547-694      AC A7T023
#=GS A7T023/547-694      OS Nematostella vectensis
#=GS A7T023/547-694      DE Predicted protein
#=GS A7T023/547-694      DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS F6X8Y9/315-472      AC F6X8Y9
#=GS F6X8Y9/315-472      OS Ciona intestinalis
#=GS F6X8Y9/315-472      DE Uncharacterized protein
#=GS F6X8Y9/315-472      DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS C3Z1H6/68-222       AC C3Z1H6
#=GS C3Z1H6/68-222       OS Branchiostoma floridae
#=GS C3Z1H6/68-222       DE Uncharacterized protein
#=GS C3Z1H6/68-222       DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS W5MX33/94-249       AC W5MX33
#=GS W5MX33/94-249       OS Lepisosteus oculatus
#=GS W5MX33/94-249       DE TRAF3 interacting protein 2-like
#=GS W5MX33/94-249       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; 
#=GS Q28HY6/164-315      AC Q28HY6
#=GS Q28HY6/164-315      OS Xenopus tropicalis
#=GS Q28HY6/164-315      DE TRAF3 interacting protein 2
#=GS Q28HY6/164-315      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; 
#=GS A0A1S3A270/397-548  AC A0A1S3A270
#=GS A0A1S3A270/397-548  OS Erinaceus europaeus
#=GS A0A1S3A270/397-548  DE adapter protein CIKS isoform X2
#=GS A0A1S3A270/397-548  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus; Erinaceus europaeus; 
#=GS X1WEU6/267-420      AC X1WEU6
#=GS X1WEU6/267-420      OS Danio rerio
#=GS X1WEU6/267-420      DE TRAF3-interacting protein 2-like
#=GS X1WEU6/267-420      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A0A1U7TU35/385-536  AC A0A1U7TU35
#=GS A0A1U7TU35/385-536  OS Carlito syrichta
#=GS A0A1U7TU35/385-536  DE adapter protein CIKS isoform X3
#=GS A0A1U7TU35/385-536  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Tarsiiformes; Tarsiidae; Carlito; Carlito syrichta; 
#=GS A0A2U4AW07/89-241   AC A0A2U4AW07
#=GS A0A2U4AW07/89-241   OS Tursiops truncatus
#=GS A0A2U4AW07/89-241   DE adapter protein CIKS isoform X4
#=GS A0A2U4AW07/89-241   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Cetacea; Odontoceti; Delphinidae; Tursiops; Tursiops truncatus; 
#=GS A0A1U8C658/61-213   AC A0A1U8C658
#=GS A0A1U8C658/61-213   OS Mesocricetus auratus
#=GS A0A1U8C658/61-213   DE adapter protein CIKS isoform X3
#=GS A0A1U8C658/61-213   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Mesocricetus; Mesocricetus auratus; 
#=GS A0A1L8G8T2/229-379  AC A0A1L8G8T2
#=GS A0A1L8G8T2/229-379  OS Xenopus laevis
#=GS A0A1L8G8T2/229-379  DE Uncharacterized protein
#=GS A0A1L8G8T2/229-379  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis; 
#=GS A0A1W2WHQ0/332-489  AC A0A1W2WHQ0
#=GS A0A1W2WHQ0/332-489  OS Ciona intestinalis
#=GS A0A1W2WHQ0/332-489  DE uncharacterized protein LOC100187055 isoform X2
#=GS A0A1W2WHQ0/332-489  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS C3Z1H5/1-147        AC C3Z1H5
#=GS C3Z1H5/1-147        OS Branchiostoma floridae
#=GS C3Z1H5/1-147        DE Uncharacterized protein
#=GS C3Z1H5/1-147        DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS A0A1S3A281/395-547  AC A0A1S3A281
#=GS A0A1S3A281/395-547  OS Erinaceus europaeus
#=GS A0A1S3A281/395-547  DE adapter protein CIKS isoform X3
#=GS A0A1S3A281/395-547  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus; Erinaceus europaeus; 
#=GS A0A1S3A268/397-549  AC A0A1S3A268
#=GS A0A1S3A268/397-549  OS Erinaceus europaeus
#=GS A0A1S3A268/397-549  DE adapter protein CIKS isoform X1
#=GS A0A1S3A268/397-549  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus; Erinaceus europaeus; 
#=GS A0A1L8G8Z3/162-312  AC A0A1L8G8Z3
#=GS A0A1L8G8Z3/162-312  OS Xenopus laevis
#=GS A0A1L8G8Z3/162-312  DE Uncharacterized protein
#=GS A0A1L8G8Z3/162-312  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis; 
#=GF SQ 17
Q6IR26/27-179               -ELRKVFITYS-MDT---AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAE-SQLDEDEHGLHTK------YIHRMMQIEFISQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
A7T023/547-694              -----YYISYY-PESDEYVKLVVKFVSFLRELDYDVIMDKMSAKVPQEGPIRWAQQQISTSSK-IIVLCSPKYLKMCQ----MRPKEDPKAFLTEEESRVWYEIEMLGSIYMQRRNAN-KMVCIWMNKGVPEGLPPWMH--VRYTWPADYENIFMRL---EDTKS
F6X8Y9/315-472              RENIKVFITYAEAHNEEHMRQVVQISQTLIQNRIDVKVDMLEENMQSLSISDWLNSALYECDF-VLICVSPGYMQEVDPQEGESLKPGERALNTK------YIYRRLLSEYIAQSSRNYRFIPVLVSNGDRCHVPHWLRDTKIYKWPTDFEDIFYRLLKQEKYIK
C3Z1H6/68-222               ARKESVFITYS-DDGPLHLSMVLDMAYHLHNQGYIVQVDMFQRHFMGMGKMAWLDDKVENSDF-ILVVCSPKYRRDVDGS--GPDEDDDHGLNTR------YINRAMQTVYLENRCINYKVIPVLLKGYTRETCPRWLRNTLLYRWPRDVQDIMCRLRREERYKM
W5MX33/94-249               LEQRKVFVTYE-ADSDKHVHEIIQFVALLRRNGFDTRIDVFEQQFKSISKIDFMEKYISEKDYLIIIVISPKYYETVTHSH-ISMENDENTLNTV------YIHKQLQNEFIQNGSKNFRFIPILFPGARKCHVPTWLQNTHIYWWPKDRDDILRRLMRVEKYN-
Q28HY6/164-315              -EMRKVFITYS-VDT---AWEVLRLADLLRANGFQATVDVLEGSIRGMDIIRWMERYLSDMSIMIIVAISPQYKVDVE-AD-SSRTADDHGLHTR------YIHKMMQLEYIKEGSLNFRFIPVLFQNATMEHVPAWLRNTNIYRWPEQTKHIILRLLREEEFIT
A0A1S3A270/397-548          -ELRKVFITYS-MDT---AVEMVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRD-TVMIIVAISPKYKQDVEGTE-SQQDEDEHGLHTK------YIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
X1WEU6/267-420              LEQRKVFVTYE-ADSEKHVKEIINFVALLRHNGFYTHIDMFEQQFKSISKIDFMERYISEKDYLIIIVISPKYHEIVTNAS-FCMENDE-TLNTV------YIHKQLQNEFIQNGARNYRFIPILFPGAKKCHVPSWLQGTQIFTWPRDRDDILRRLMRVEKY--
A0A1U7TU35/385-536          -ELRKVFITYS-MDT---AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRD-TVMIIVAISPKYKQDVEGAE-SQLDEDEHGLHTK------YIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
A0A2U4AW07/89-241           -ELRKVFITYS-MDT---AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAE-SQLDEDEHGLHTK------YIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
A0A1U8C658/61-213           -ELRKVFITYS-MDT---AMEVVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGAE-SQLDDDEHGLHTK------YIHRMMQIEFINQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
A0A1L8G8T2/229-379          -EMRKVFITYS-VDT---AWEVLRLADLLRANGFQATVDVLEGSLRGMDIIRWMERYLSDMSVMIIVAISPQYKVDVE-AD-SSRPSDDHGLHTR------YIHRMMQIEFIKQGSLNFRFIPVLFQNATMEHVPAWLRNTNIYRWPEQTNHLILRLLREEVFI-
A0A1W2WHQ0/332-489          RENIKVFITYAEAHNEEHMRQVVQISQTLIQNRIDVKVDMLEENMQSLSISDWLNSALYECDF-VLICVSPGYMQEVDPQEGESLKPGERALNTK------YIYRRLLSEYIAQSSRNYRFIPVLVSNGDRCHVPHWLRDTKIYKWPTDFEDIFYRLLKQEKYIK
C3Z1H5/1-147                -----IFITYS-HENEVHLVRVLDMAKKLFREGFFVEVDMFERHFAGMDKMGWLDGRIKGVTF-VIIICSPQYLLDVE-----QKSDSMEGLNTL------YIHRSLQTEYLENRACNYRFIPILFDGFSRDCVPRWLHNTTIFYWPKDIQDIMARLRRRERFVT
A0A1S3A281/395-547          -ELRKVFITYS-MDT---AVEMVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGTE-SQQDEDEHGLHTK------YIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
A0A1S3A268/397-549          -ELRKVFITYS-MDT---AVEMVKFVNFLLVNGFQTAIDIFEDRIRGIDIIKWMERYLRDKTVMIIVAISPKYKQDVEGTE-SQQDEDEHGLHTK------YIHRMMQIEFIKQGSMNFRFIPVLFPNAKKEHVPTWLQNTHVYSWPKNKKNILLRLLREEEYVA
A0A1L8G8Z3/162-312          -EMRKVFITYS-VDT---AWEVLRLADLLRANGFQATVDVLEGSLRGMDIIRWMERYLSDMSVMIIVAISPQYKVDVE-AD-SSRPSDDHGLHTR------YIHRMMQIEFIKQGSLNFRFIPVLFQNATMEHVPAWLRNTNIYRWPEQTNHLILRLLREEVFI-
#=GC scorecons              052356887950365102424764553493356645369567444455546476544635244277745995934575133034344654585940000009756465467645553957687775454344569498557358399452458539946494632
#=GC scorecons_70           _____*****___*_______*______*___**___**__*__________*____*______***__**_*___*__________*___*_*_______**_*_*__***_____*_******________**_**__*__*_**_____*__**_*_*_*__
#=GC scorecons_80           ______****__________________*_________*_____________*___________*_*__**_*___*______________*_*_______**_______*______*_*_****_________*_**__*__*_**_____*__**___*____
#=GC scorecons_90           ______**_*__________________*_________*______________________________**_*____________________*_______*_______________*___*____________*_**_____*_**________**___*____
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