# STOCKHOLM 1.0
#=GF ID 4.10.800.30/FF/000001
#=GF DE crossover junction endonuclease EME1 isoform X1
#=GF AC 4.10.800.30/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 77.410
#=GS 2zixB02/80-138_175-218      AC Q96AY2
#=GS 2zixB02/80-138_175-218      OS Homo sapiens
#=GS 2zixB02/80-138_175-218      DE Crossover junction endonuclease EME1
#=GS 2zixB02/80-138_175-218      DR CATH; 2zix; B:309-447; 
#=GS 2zixB02/80-138_175-218      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS 2zixB02/80-138_175-218      DR GO; GO:0005515; GO:0005654; GO:0036297; GO:0072429; 
#=GS Q8BJW7/309-370_408-447      AC Q8BJW7
#=GS Q8BJW7/309-370_408-447      OS Mus musculus
#=GS Q8BJW7/309-370_408-447      DE Crossover junction endonuclease EME1
#=GS Q8BJW7/309-370_408-447      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q8BJW7/309-370_408-447      DR GO; GO:0000790; GO:0005515; GO:0005720; GO:0072429; 
#=GS Q96AY2/309-371_408-447      AC Q96AY2
#=GS Q96AY2/309-371_408-447      OS Homo sapiens
#=GS Q96AY2/309-371_408-447      DE Crossover junction endonuclease EME1
#=GS Q96AY2/309-371_408-447      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q96AY2/309-371_408-447      DR GO; GO:0005515; GO:0005654; GO:0036297; GO:0072429; 
#=GS F1NU84/302-363_406-445      AC F1NU84
#=GS F1NU84/302-363_406-445      OS Gallus gallus
#=GS F1NU84/302-363_406-445      DE Uncharacterized protein
#=GS F1NU84/302-363_406-445      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS G1KDU1/325-384_428-467      AC G1KDU1
#=GS G1KDU1/325-384_428-467      OS Anolis carolinensis
#=GS G1KDU1/325-384_428-467      DE Uncharacterized protein
#=GS G1KDU1/325-384_428-467      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; 
#=GS H9H7R3/306-365_407-446      AC H9H7R3
#=GS H9H7R3/306-365_407-446      OS Monodelphis domestica
#=GS H9H7R3/306-365_407-446      DE Uncharacterized protein
#=GS H9H7R3/306-365_407-446      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS F6XT89/314-376_415-454      AC F6XT89
#=GS F6XT89/314-376_415-454      OS Equus caballus
#=GS F6XT89/314-376_415-454      DE Essential meiotic structure-specific endonuclease 1
#=GS F6XT89/314-376_415-454      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Perissodactyla; Equidae; Equus; Equus; Equus caballus; 
#=GS G3N153/310-372_412-451      AC G3N153
#=GS G3N153/310-372_412-451      OS Bos taurus
#=GS G3N153/310-372_412-451      DE Essential meiotic structure-specific endonuclease 1
#=GS G3N153/310-372_412-451      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Bovinae; Bos; Bos taurus; 
#=GS A0A2Y9LW05/314-376_416-455  AC A0A2Y9LW05
#=GS A0A2Y9LW05/314-376_416-455  OS Delphinapterus leucas
#=GS A0A2Y9LW05/314-376_416-455  DE crossover junction endonuclease EME1 isoform X1
#=GS A0A2Y9LW05/314-376_416-455  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Cetacea; Odontoceti; Monodontidae; Delphinapterus; Delphinapterus leucas; 
#=GS F1RT80/313-375_414-453      AC F1RT80
#=GS F1RT80/313-375_414-453      OS Sus scrofa
#=GS F1RT80/313-375_414-453      DE Crossover junction endonuclease EME1
#=GS F1RT80/313-375_414-453      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Suina; Suidae; Sus; Sus scrofa; 
#=GS A0A2U3YAM9/303-365_404-443  AC A0A2U3YAM9
#=GS A0A2U3YAM9/303-365_404-443  OS Leptonychotes weddellii
#=GS A0A2U3YAM9/303-365_404-443  DE crossover junction endonuclease EME1 isoform X2
#=GS A0A2U3YAM9/303-365_404-443  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Phocidae; Leptonychotes; Leptonychotes weddellii; 
#=GS M3WGQ9/313-375_414-453      AC M3WGQ9
#=GS M3WGQ9/313-375_414-453      OS Felis catus
#=GS M3WGQ9/313-375_414-453      DE Uncharacterized protein
#=GS M3WGQ9/313-375_414-453      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Feliformia; Felidae; Felinae; Felis; Felis catus; 
#=GS A0A2U4C3H9/314-376_416-455  AC A0A2U4C3H9
#=GS A0A2U4C3H9/314-376_416-455  OS Tursiops truncatus
#=GS A0A2U4C3H9/314-376_416-455  DE crossover junction endonuclease EME1 isoform X4
#=GS A0A2U4C3H9/314-376_416-455  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Cetacea; Odontoceti; Delphinidae; Tursiops; Tursiops truncatus; 
#=GS A0A2U3VKA6/304-366_405-444  AC A0A2U3VKA6
#=GS A0A2U3VKA6/304-366_405-444  OS Odobenus rosmarus divergens
#=GS A0A2U3VKA6/304-366_405-444  DE crossover junction endonuclease EME1 isoform X1
#=GS A0A2U3VKA6/304-366_405-444  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Odobenidae; Odobenus; Odobenus rosmarus; Odobenus rosmarus divergens; 
#=GS E2QYM5/314-376_417-456      AC E2QYM5
#=GS E2QYM5/314-376_417-456      OS Canis lupus familiaris
#=GS E2QYM5/314-376_417-456      DE Essential meiotic structure-specific endonuclease 1
#=GS E2QYM5/314-376_417-456      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS W5P3A7/313-375_428-467      AC W5P3A7
#=GS W5P3A7/313-375_428-467      OS Ovis aries
#=GS W5P3A7/313-375_428-467      DE Uncharacterized protein
#=GS W5P3A7/313-375_428-467      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Ruminantia; Pecora; Bovidae; Caprinae; Ovis; Ovis aries; 
#=GS A0A3Q7RXV3/314-376_417-456  AC A0A3Q7RXV3
#=GS A0A3Q7RXV3/314-376_417-456  OS Vulpes vulpes
#=GS A0A3Q7RXV3/314-376_417-456  DE crossover junction endonuclease EME1
#=GS A0A3Q7RXV3/314-376_417-456  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Vulpes; Vulpes vulpes; 
#=GS D3ZCS5/308-369_407-446      AC D3ZCS5
#=GS D3ZCS5/308-369_407-446      OS Rattus norvegicus
#=GS D3ZCS5/308-369_407-446      DE Essential meiotic structure-specific endonuclease 1
#=GS D3ZCS5/308-369_407-446      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS A0A0D9QZB8/310-372_409-448  AC A0A0D9QZB8
#=GS A0A0D9QZB8/310-372_409-448  OS Chlorocebus sabaeus
#=GS A0A0D9QZB8/310-372_409-448  DE Uncharacterized protein
#=GS A0A0D9QZB8/310-372_409-448  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS G1RCT6/310-372_422-461      AC G1RCT6
#=GS G1RCT6/310-372_422-461      OS Nomascus leucogenys
#=GS G1RCT6/310-372_422-461      DE Uncharacterized protein
#=GS G1RCT6/310-372_422-461      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hylobatidae; Nomascus; Nomascus leucogenys; 
#=GS Q5NVA9/314-376_413-452      AC Q5NVA9
#=GS Q5NVA9/314-376_413-452      OS Pongo abelii
#=GS Q5NVA9/314-376_413-452      DE Crossover junction endonuclease EME1
#=GS Q5NVA9/314-376_413-452      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS V5Y013/134-195_238-277      AC V5Y013
#=GS V5Y013/134-195_238-277      OS Gallus gallus
#=GS V5Y013/134-195_238-277      DE Essential meiotic endonuclease 1 homolog 1 variant 2
#=GS V5Y013/134-195_238-277      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS A0A2J8W8R6/314-376_413-452  AC A0A2J8W8R6
#=GS A0A2J8W8R6/314-376_413-452  OS Pongo abelii
#=GS A0A2J8W8R6/314-376_413-452  DE EME1 isoform 5
#=GS A0A2J8W8R6/314-376_413-452  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Ponginae; Pongo; Pongo abelii; 
#=GS A0A2Y9LWT8/314-376_416-455  AC A0A2Y9LWT8
#=GS A0A2Y9LWT8/314-376_416-455  OS Delphinapterus leucas
#=GS A0A2Y9LWT8/314-376_416-455  DE crossover junction endonuclease EME1 isoform X2
#=GS A0A2Y9LWT8/314-376_416-455  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Cetacea; Odontoceti; Monodontidae; Delphinapterus; Delphinapterus leucas; 
#=GF SQ 24
2zixB02/80-138_175-218              EPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALSLVIVDQESRVDAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAP
Q8BJW7/309-370_408-447              EPTILVLVLAEVFMSMAYNLKQASPSSTEKGKETLRSFVTDVTAKT-GKALSLVIVDQEKCFRMEKALVDLQLYTEAQAWMVQSWKELADFTCAFTKAVAEAP
Q96AY2/309-371_408-447              EPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITAKTAGKALSLVIVDQEKCFSAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEAP
F1NU84/302-363_406-445              EPNLLVLLGLEEFLSMVRSYKQKAQGC-AEQKETLQSFVACVMEKMPGKILALTVVEVEKYFRVEDALVDLQLCTRVQVTFFESWEELGEFATMFTKAVAEAP
G1KDU1/325-384_428-467              ESNLLVLVPLEEFLAMIQNCKQVSM---ERPTQTLQTFVANILQKNSGKTLALAVVELEKYFSVEEALVDLQLRTGVQVQMLESWKEFADFASMFTKAVAEAP
H9H7R3/306-365_407-446              EPNILVLLQEKQFMTMINNSKQDSPG---EGKETLLNFVTWITARTLGKTLSLAVVEQEKIFSVERALVELQLHTETQIRILKSWKELSDFVCMFTKAVAEAP
F6XT89/314-376_415-454              ELMVLVLLQAEAFVSMIYNFKQGSLGSTEKGKETLRSFVTDITARTAGKALSLVIVDQEKSFSIEEALVDLQLHTQAQAQIVQSWKELADFACTFTKAVAEAP
G3N153/310-372_412-451              EPMVLVLLLAEVFMSMIYHFKQGSLGSTEEGKKTLESFVTDITARTAGKDLSLVIVDPEKCFSVEEALVDLQLHTEAQARIVQSWKELADLACAFTKAVAEAP
A0A2Y9LW05/314-376_416-455          EPMVLVLLLAEAFVSMIYNFKQGSLGSTEEGKKTLRSFVTDITARTAGKALSLVIVDPEKCFRMEEALVDLQLHTEAQARIVQSWKELADLACTFTKAVAEAP
F1RT80/313-375_414-453              EPVVLALLLAEAFVSMISNFKQGSLDSTEEGKETLRSFVTDITARTAGKALTLVIVDQEKCFSVEEALVDLQLHTEAQARIVWSWKELADLACTFTKAVAEAP
A0A2U3YAM9/303-365_404-443          EPTVLALLPAEAFVSLVQNFKQGSVGGTEKGKETLRSFVTDATARAAGKALSLVIVDQEKRFSVEEALVDLQLYTQAQARTVQSWKELADFACAFTKAVAEAP
M3WGQ9/313-375_414-453              EPMVLVLLLAEAFVSMVYKFKQGSLGDSEKGKETLRSFVTDTAARTAGKALSLVIVDQEKCFSVEEALVDLQLYTEAQARIVQSWKELADFACAFTKAVAEAP
A0A2U4C3H9/314-376_416-455          EPMVLVLLLAEAFVSMIYNFKQGSLGSTKEGKETLRSFVTDITARTAGKALSLVIVDPEKCFRMEEALVDLQLHTEAQARIVQSWKELADLACAFTKAVAEAP
A0A2U3VKA6/304-366_405-444          EPMVLALLPAEAFVSMVQNFKEGSAGGTEKGKETLRSFVTDATARAAGKALSLVIVDQGQCFSVEEALVDMQLYTQAQARMVQSWKELADFACAFTKAVAEAP
E2QYM5/314-376_417-456              EPVVLALLPAEAFVSMVYNFKQGSLGDAEKGKETLRSFVTDATARTAGKALSLVIVDQEKCFSVEEALVDLQLYTQAQARIVQSWKELANFACAFTKAVAEAP
W5P3A7/313-375_428-467              EPMVLVLLLAEVFMSMIYHFKQGSLGSTEEGKQTLRSFVTDITARTAGKDLSLVIVDPEKHFRMEEALVDLQLHTEAQAQIVQSWKELADLACAFTKAVAEAP
A0A3Q7RXV3/314-376_417-456          EPVVLALLPAEAFVSMVYNFKQGSLGDAEKGKETLRSFVTDATARTAGKALSLVIVDQKKCFSVEEALVDLQLYTQAQARIVQSWKELADFACAFTKAVAEAP
D3ZCS5/308-369_407-446              EPTILVLVLKEVFMSMVYNSKQGNPGSTEKGKETLRGFVTDVTART-GKALSLVIVDQEKCLRMEEALVDLQLYTEAQARIVQSWRELADFACAFTKAVAEAP
A0A0D9QZB8/310-372_409-448          EPTVLVLLRAETFVSMIYNGKQGSLDSTMKGKETFQGFVTDITARTAGKALSLVIVDQEKCFSAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAETP
G1RCT6/310-372_422-461              EPTVLVLLRAEAFVSMIDNGKQGRLDSTMKGKEMLQGFVTDITARTAGKALSLVIVDQEKCFSAEEALVDLQLHTEAQAQIMQSWKEVADFTCAFTKAVAEAP
Q5NVA9/314-376_413-452              EPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITARTAGKALSLVIVDQEKCFSAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEVP
V5Y013/134-195_238-277              EPNLLVLLGLEEFLSMVRSYKQKAQGC-AEQKETLQSFVACVMEKMPGKILALTVVEVEKYFRVEDALVDLQLCTRVQVTFFESWEELGEFATMFTKAVAEAP
A0A2J8W8R6/314-376_413-452          EPTVLVLLRAEAFVSMIDNGKQGSLDSTMKGKETLQGFVTDITARTAGKALSLVIVDQEKCFSAEEALVDLQLHTEAQAQIVQSWKELADFTCAFTKAVAEVP
A0A2Y9LWT8/314-376_416-455          EPMVLVLLLAEAFVSMIYNFKQGSLGSTEEGKKTLRSFVTDITARTAGKALSLVIVDPEKCFRMEEALVDLQLHTEAQARIVQSWKELADLACTFTKAVAEAP
#=GC scorecons                      9746979735849678636398564543456878855997566676599596967974885855969998899595696566699797677665999999979
#=GC scorecons_70                   **_*****__*_*_***_*_**_*______*****__***__***__**_*******_**_*__*********_*_***____**********_*********
#=GC scorecons_80                   **__****__*_*_**____**_________*_**__***____*__**_*_*_***_**_*__*_*******_*__*_____*****_**___*********
#=GC scorecons_90                   *___*_*___*_*__*____**___________**__**________**_*_*__*__**_*__*_*******_*__*_____**_*_______*******_*
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