# STOCKHOLM 1.0 #=GF ID 4.10.1000.10/FF/000036 #=GF DE Zinc finger CCCH domain-containing protein 4 #=GF AC 4.10.1000.10/FF/000036 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 59.359 #=GS Q9LNV5/149-208 AC Q9LNV5 #=GS Q9LNV5/149-208 OS Arabidopsis thaliana #=GS Q9LNV5/149-208 DE Zinc finger CCCH domain-containing protein 4 #=GS Q9LNV5/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LNV5/149-208 DR GO; GO:0003729; GO:0005515; GO:0005634; GO:0042742; #=GS Q9ZW36/149-205 AC Q9ZW36 #=GS Q9ZW36/149-205 OS Arabidopsis thaliana #=GS Q9ZW36/149-205 DE Zinc finger CCCH domain-containing protein 25 #=GS Q9ZW36/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9ZW36/149-205 DR GO; GO:0005515; #=GS Q9FL40/144-210 AC Q9FL40 #=GS Q9FL40/144-210 OS Arabidopsis thaliana #=GS Q9FL40/144-210 DE Zinc finger CCCH domain-containing protein 53 #=GS Q9FL40/144-210 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS F4K5C2/144-210 AC F4K5C2 #=GS F4K5C2/144-210 OS Arabidopsis thaliana #=GS F4K5C2/144-210 DE CCCH-type zinc fingerfamily protein with RNA-binding domain-containing protein #=GS F4K5C2/144-210 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A0P0WTE0/73-130 AC A0A0P0WTE0 #=GS A0A0P0WTE0/73-130 OS Oryza sativa Japonica Group #=GS A0A0P0WTE0/73-130 DE Os06g0170500 protein #=GS A0A0P0WTE0/73-130 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS P0CR50/148-221 AC P0CR50 #=GS P0CR50/148-221 OS Cryptococcus neoformans var. neoformans JEC21 #=GS P0CR50/148-221 DE Pre-mRNA-splicing factor SLT11 #=GS P0CR50/148-221 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; #=GS A0A0R0L9C8/26-84 AC A0A0R0L9C8 #=GS A0A0R0L9C8/26-84 OS Glycine max #=GS A0A0R0L9C8/26-84 DE Uncharacterized protein #=GS A0A0R0L9C8/26-84 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS A0A3P6GIU9/149-208 AC A0A3P6GIU9 #=GS A0A3P6GIU9/149-208 OS Brassica oleracea #=GS A0A3P6GIU9/149-208 DE Uncharacterized protein #=GS A0A3P6GIU9/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; #=GS V4MG00/149-205 AC V4MG00 #=GS V4MG00/149-205 OS Eutrema salsugineum #=GS V4MG00/149-205 DE Uncharacterized protein #=GS V4MG00/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS A0A1J3GFP1/149-205 AC A0A1J3GFP1 #=GS A0A1J3GFP1/149-205 OS Noccaea caerulescens #=GS A0A1J3GFP1/149-205 DE Zinc finger CCCH domain-containing protein 25 #=GS A0A1J3GFP1/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS R0GW62/169-228 AC R0GW62 #=GS R0GW62/169-228 OS Capsella rubella #=GS R0GW62/169-228 DE Uncharacterized protein #=GS R0GW62/169-228 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS A0A078IPK2/149-205 AC A0A078IPK2 #=GS A0A078IPK2/149-205 OS Brassica napus #=GS A0A078IPK2/149-205 DE BnaA04g28530D protein #=GS A0A078IPK2/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS A0A397ZMG1/149-205 AC A0A397ZMG1 #=GS A0A397ZMG1/149-205 OS Brassica rapa #=GS A0A397ZMG1/149-205 DE Uncharacterized protein #=GS A0A397ZMG1/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; #=GS K7VE89/149-208 AC K7VE89 #=GS K7VE89/149-208 OS Zea mays #=GS K7VE89/149-208 DE Zinc finger CCCH domain-containing protein 4 #=GS K7VE89/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS D7KH15/149-208 AC D7KH15 #=GS D7KH15/149-208 OS Arabidopsis lyrata subsp. lyrata #=GS D7KH15/149-208 DE Uncharacterized protein #=GS D7KH15/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A0D3DJ96/149-208 AC A0A0D3DJ96 #=GS A0A0D3DJ96/149-208 OS Brassica oleracea var. oleracea #=GS A0A0D3DJ96/149-208 DE Uncharacterized protein #=GS A0A0D3DJ96/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS M4FFW4/149-205 AC M4FFW4 #=GS M4FFW4/149-205 OS Brassica rapa subsp. pekinensis #=GS M4FFW4/149-205 DE Uncharacterized protein #=GS M4FFW4/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS A0A0D0WL47/148-220 AC A0A0D0WL47 #=GS A0A0D0WL47/148-220 OS Cryptococcus gattii VGIV IND107 #=GS A0A0D0WL47/148-220 DE Unplaced genomic scaffold supercont2.19, whole genome shotgun sequence #=GS A0A0D0WL47/148-220 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus gattii species complex; Cryptococcus gattii VGIV; #=GS C5Z502/149-208 AC C5Z502 #=GS C5Z502/149-208 OS Sorghum bicolor #=GS C5Z502/149-208 DE Uncharacterized protein #=GS C5Z502/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A226BRP5/148-221 AC A0A226BRP5 #=GS A0A226BRP5/148-221 OS Cryptococcus neoformans var. grubii Bt85 #=GS A0A226BRP5/148-221 DE Pre-mRNA-splicing factor SLT11 #=GS A0A226BRP5/148-221 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GS A0A0D3C2W8/149-205 AC A0A0D3C2W8 #=GS A0A0D3C2W8/149-205 OS Brassica oleracea var. oleracea #=GS A0A0D3C2W8/149-205 DE Uncharacterized protein #=GS A0A0D3C2W8/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; #=GS A0A078FRV1/149-208 AC A0A078FRV1 #=GS A0A078FRV1/149-208 OS Brassica napus #=GS A0A078FRV1/149-208 DE BnaA08g28930D protein #=GS A0A078FRV1/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS D7LLA7/149-205 AC D7LLA7 #=GS D7LLA7/149-205 OS Arabidopsis lyrata subsp. lyrata #=GS D7LLA7/149-205 DE Uncharacterized protein #=GS D7LLA7/149-205 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS M4EPF9/149-208 AC M4EPF9 #=GS M4EPF9/149-208 OS Brassica rapa subsp. pekinensis #=GS M4EPF9/149-208 DE Uncharacterized protein #=GS M4EPF9/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS C5Y082/149-208 AC C5Y082 #=GS C5Y082/149-208 OS Sorghum bicolor #=GS C5Y082/149-208 DE Uncharacterized protein #=GS C5Y082/149-208 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS R0GWK5/125-184 AC R0GWK5 #=GS R0GWK5/125-184 OS Capsella rubella #=GS R0GWK5/125-184 DE Uncharacterized protein #=GS R0GWK5/125-184 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS P0CR51/148-221 AC P0CR51 #=GS P0CR51/148-221 OS Cryptococcus neoformans var. neoformans B-3501A #=GS P0CR51/148-221 DE Pre-mRNA-splicing factor SLT11 #=GS P0CR51/148-221 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. neoformans; #=GS A0A226A1I4/148-221 AC A0A226A1I4 #=GS A0A226A1I4/148-221 OS Cryptococcus neoformans var. grubii c45 #=GS A0A226A1I4/148-221 DE Pre-mRNA-splicing factor SLT11 #=GS A0A226A1I4/148-221 DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex; Cryptococcus neoformans; Cryptococcus neoformans var. grubii; #=GF SQ 28 Q9LNV5/149-208 --QRTTPYYKRNRAHVCSFFIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ Q9ZW36/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGDECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- Q9FL40/144-210 KLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMP---ETGELSHQNIRDRYYSVNDPVAMKLLRKA------- F4K5C2/144-210 KLQRRTPSYEKNRPKICSFYTIGQCKRGAECSFRHEMP---ETGELSHQNIRDRYYSVNDPVAMKLLRKA------- A0A0P0WTE0/73-130 --QRTAPYYKRNRAHVCSFYVRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVA-------------- P0CR50/148-221 ---RTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRNDPVAKKILSQNAESKGLK A0A0R0L9C8/26-84 -LQRTTPYYKRNRAHICSFYIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVA-------------- A0A3P6GIU9/149-208 --QRTTPYYKRNRAHVCSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ V4MG00/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- A0A1J3GFP1/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- R0GW62/169-228 --QRTTPYYKRNRAHVCSFFIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ A0A078IPK2/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- A0A397ZMG1/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- K7VE89/149-208 --QRTAPYYKRNRAHVCSFFVRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVALK------------ D7KH15/149-208 --QRTTPYYKRNRAHVCSFFIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ A0A0D3DJ96/149-208 --QRTTPYYKRNRAHVCSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ M4FFW4/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- A0A0D0WL47/148-220 ---RTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETHKPSQQSLVDRYYGRNDPVAKKILSQNAESKGL- C5Z502/149-208 --QRTAPYYKRNRAHVCSFFVRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVALK------------ A0A226BRP5/148-221 ---RTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRNDPVAKKILSQNAESKGLK A0A0D3C2W8/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- A0A078FRV1/149-208 --QRTTPYYKRNRAHVCSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ D7LLA7/149-205 --QRTTPYYKRNRAHICSFFIRGECTRGDECPYRHEMP---ETGELSQQNIKDRYYGVNDPV--------------- M4EPF9/149-208 --QRTTPYYKRNRAHVCSFFIRGECTRGEECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ C5Y082/149-208 --QRTAPYYKRNRAHVCSFFVRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVALK------------ R0GWK5/125-184 --QRTTPYYKRNRAHVCSFFIRGECTRGAECPYRHEMP---ETGELSQQNIKDRYYGVNDPVAMK------------ P0CR51/148-221 ---RTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRNDPVAKKILSQNAESKGLK A0A226A1I4/148-221 ---RTDPYYKRNRPHICSFFVKGECKRGAECPFRHEMPKENETQKPSQQSLVDRYYGRNDPVAKKILSQNAESKGLK #=GC scorecons 00397597978996779998659795996997799999000995669896649999759999524111110000000 #=GC scorecons_70 ___**_*******_******__***_**_*********___**_*_*****_*****_****_______________ #=GC scorecons_80 ___**_*******_******__***_**_*********___**___***___*****_****_______________ #=GC scorecons_90 ___*__*_*_***___***___*_*_**_**__*****___**___*_*___****__****_______________ //