# STOCKHOLM 1.0
#=GF ID 3.90.70.110/FF/000001
#=GF DE Non-structural polyprotein P1234
#=GF AC 3.90.70.110/FF/000001
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 55.520
#=GS Q8JUX6/991-1140      AC Q8JUX6
#=GS Q8JUX6/991-1140      OS Chikungunya virus strain S27-African prototype
#=GS Q8JUX6/991-1140      DE Polyprotein P1234
#=GS Q8JUX6/991-1140      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q8JUX6/991-1140      DR GO; GO:0051493; 
#=GS Q8JUX6/991-1140      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS F2YI08/456-605       AC F2YI08
#=GS F2YI08/456-605       OS Chikungunya virus
#=GS F2YI08/456-605       DE NsP2 protein
#=GS F2YI08/456-605       DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS F2YI08/456-605       DR GO; GO:0044165; 
#=GS P36327/990-1138      AC P36327
#=GS P36327/990-1138      OS Venezuelan equine encephalitis virus (strain 3880)
#=GS P36327/990-1138      DE Polyprotein P1234
#=GS P36327/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS P36327/990-1138      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS A0A068FNV2/991-1140  AC A0A068FNV2
#=GS A0A068FNV2/991-1140  OS Chikungunya virus
#=GS A0A068FNV2/991-1140  DE Non-structural polyprotein P1234
#=GS A0A068FNV2/991-1140  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A068FNV2/991-1140  DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS Q5XXP4/991-1140      AC Q5XXP4
#=GS Q5XXP4/991-1140      OS Chikungunya virus strain Senegal 37997
#=GS Q5XXP4/991-1140      DE Polyprotein P1234
#=GS Q5XXP4/991-1140      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q5XXP4/991-1140      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS P36328/990-1138      AC P36328
#=GS P36328/990-1138      OS Venezuelan equine encephalitis virus (strain P676)
#=GS P36328/990-1138      DE Polyprotein P1234
#=GS P36328/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS P36328/990-1138      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS Q8V294/990-1138      AC Q8V294
#=GS Q8V294/990-1138      OS Venezuelan equine encephalitis virus (strain CPA201)
#=GS Q8V294/990-1138      DE Polyprotein P1234
#=GS Q8V294/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS Q8V294/990-1138      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS P27282/990-1138      AC P27282
#=GS P27282/990-1138      OS Venezuelan equine encephalitis virus (strain Trinidad donkey)
#=GS P27282/990-1138      DE Polyprotein P1234
#=GS P27282/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS P27282/990-1138      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS Q9WJC7/990-1138      AC Q9WJC7
#=GS Q9WJC7/990-1138      OS Venezuelan equine encephalitis virus (strain Mena II)
#=GS Q9WJC7/990-1138      DE Polyprotein P1234
#=GS Q9WJC7/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS Q9WJC7/990-1138      DR EC; 2.7.7.19; 2.7.7.48; 3.1.3.33; 3.1.3.84; 3.6.1.15; 3.6.4.13; 
#=GS A6MH22/991-1140      AC A6MH22
#=GS A6MH22/991-1140      OS Chikungunya virus
#=GS A6MH22/991-1140      DE Nonstructural polyprotein
#=GS A6MH22/991-1140      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS C8YZ72/991-1140      AC C8YZ72
#=GS C8YZ72/991-1140      OS Chikungunya virus
#=GS C8YZ72/991-1140      DE Truncated non-structural polyprotein
#=GS C8YZ72/991-1140      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A172QBB2/991-1140  AC A0A172QBB2
#=GS A0A172QBB2/991-1140  OS Chikungunya virus
#=GS A0A172QBB2/991-1140  DE Non-structural polyprotein
#=GS A0A172QBB2/991-1140  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1J2/974-1123  AC A0A221I1J2
#=GS A0A221I1J2/974-1123  OS Chikungunya virus
#=GS A0A221I1J2/974-1123  DE Nonstructural polyprotein
#=GS A0A221I1J2/974-1123  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS D7R968/992-1141      AC D7R968
#=GS D7R968/992-1141      OS Chikungunya virus
#=GS D7R968/992-1141      DE Nonstructural polyprotein
#=GS D7R968/992-1141      DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1Z0/976-1121  AC A0A221I1Z0
#=GS A0A221I1Z0/976-1121  OS Chikungunya virus
#=GS A0A221I1Z0/976-1121  DE Nonstructural polyprotein
#=GS A0A221I1Z0/976-1121  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1X7/974-1123  AC A0A221I1X7
#=GS A0A221I1X7/974-1123  OS Chikungunya virus
#=GS A0A221I1X7/974-1123  DE Nonstructural polyprotein
#=GS A0A221I1X7/974-1123  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS A0A221I1K8/973-1121  AC A0A221I1K8
#=GS A0A221I1K8/973-1121  OS Chikungunya virus
#=GS A0A221I1K8/973-1121  DE Nonstructural polyprotein
#=GS A0A221I1K8/973-1121  DR ORG; Viruses; Togaviridae; Alphavirus; Chikungunya virus; 
#=GS Q9WIJ1/990-1138      AC Q9WIJ1
#=GS Q9WIJ1/990-1138      OS Venezuelan equine encephalitis virus (strain Trinidad donkey)
#=GS Q9WIJ1/990-1138      DE Putative nonstructural polyprotein
#=GS Q9WIJ1/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS M1KSE3/990-1138      AC M1KSE3
#=GS M1KSE3/990-1138      OS Venezuelan equine encephalitis virus
#=GS M1KSE3/990-1138      DE Putative non-structural polyprotein P1234
#=GS M1KSE3/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS M1KF28/990-1138      AC M1KF28
#=GS M1KF28/990-1138      OS Venezuelan equine encephalitis virus
#=GS M1KF28/990-1138      DE Non-structural polyprotein P1234
#=GS M1KF28/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GS M1JR74/990-1138      AC M1JR74
#=GS M1JR74/990-1138      OS Venezuelan equine encephalitis virus
#=GS M1JR74/990-1138      DE Putative non-structural polyprotein P1234
#=GS M1JR74/990-1138      DR ORG; Viruses; Togaviridae; Alphavirus; Venezuelan equine encephalitis virus; 
#=GF SQ 21
Q8JUX6/991-1140              SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
F2YI08/456-605               SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
P36327/990-1138              AIMRHILERPDPTDVFQNKANVCWAKALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLVPVN
A0A068FNV2/991-1140          SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
Q5XXP4/991-1140              SIMAGICNHQVTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDRAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVHYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNTNKQICVTTRRIEDFNPNTNIIPAN
P36328/990-1138              AIMRHILERPDPTDVFQNKANVCWAKALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLVPVN
Q8V294/990-1138              AIMRHILEKPDPTDVFQNKANVCWAKALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVTTGRAYDMNTGTLRNYDPRINLVPVN
P27282/990-1138              AIMRHILERPDPTDVFQNKANVCWAKALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLVPVN
Q9WJC7/990-1138              AIMRHILEKPDPTDVFQNKANVCWAKALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRYFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLVPVN
A6MH22/991-1140              SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
C8YZ72/991-1140              SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
A0A172QBB2/991-1140          SIMAGICSHQVTFDTFQNKANVCWAKSLVPVLETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRVYGVDLDSGLFSKPLVSVYFADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
A0A221I1J2/974-1123          SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVXXNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
D7R968/992-1141              SIMAGICSHQMTFDTFQNKANVCWAKSLVPILKTAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADSHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIPAN
A0A221I1Z0/976-1121          SIMAGXCXHQMXFDXFQNKXNVCWAKSLVPILXTAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICXRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPXXXX----
A0A221I1X7/974-1123          SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDSGLFSKPLVSVYYADNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIXXXXXXXXIIPAN
A0A221I1K8/973-1121          SIMAGICSHQMTFDTFQNKANVCWAKSLVPILETAGIKLNDRQWSQIIQAFKEDKAYSPEVALNEICTRMYGVDLDXGLFSKPLVSVYXXDNHWDNRPGGKMFGFNPEAASILERKYPFTKGKWNINKQICVTTRRIEDFNPTTNIIXX-
Q9WIJ1/990-1138              AIMRHILERPDPTDVFQNKANVCWAKALVPVLKTAGIDMTTEQWN-TVDYFETDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNKEVVRQLSRRYPQLPRAVATGRVYDMNTGTLRNYDPRINLVPVN
M1KSE3/990-1138              AIMRHILEKPDPTDVFQNKANVCWAKALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLVPVN
M1KF28/990-1138              AIMRHILEKPDPTDVFQNKANVCWAKALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINFVPVN
M1JR74/990-1138              AIMRHILEKPDPTDVFQNKANVCWAKALVPVLKTAGIDLTTEQWN-TVDYFKEDKAHSAEIVLNQLCVRFFGLDLDSGLFSAPTVPLSIRNNHWDNSPSPNMYGLNHEVVRQLSRRYPQLPRAVTTGRVYDMNTGTLRNYDPRINLVPVN
#=GC scorecons               699557445545595999979999996999795999957655996267549769897969758966959579699989999595966545689999596569796949665495979945555456574546695565565844756747
#=GC scorecons_70            _**__*_______*_***********_*****_****_*___**___*__********_**_*****_*_***********_*_*_*___******_*___*****_*____*_****_________*___*_*__*__*_*__*_**_*
#=GC scorecons_80            _**__*_______*_***********_***_*_****_*___**______*__***_*_*__**__*_*_**_********_*_*______*****_*___***_*_*____*_*_**_______________*_______*________
#=GC scorecons_90            _**__________*_****_******_***_*_****_____**______*__***_*_*__**__*_*__*_********_*_*______*****_*___*_*_*_*____*_*_**_______________*_______*________
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