# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000266
#=GF DE Ubiquitin-specific peptidase 1
#=GF AC 3.90.70.10/FF/000266
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 70.533
#=GS Q8I077/313-356_414-485_648-815_987-1045  AC Q8I077
#=GS Q8I077/313-356_414-485_648-815_987-1045  OS Drosophila melanogaster
#=GS Q8I077/313-356_414-485_648-815_987-1045  DE BcDNA.LD22910
#=GS Q8I077/313-356_414-485_648-815_987-1045  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q8I077/313-356_414-485_648-815_987-1045  DR GO; GO:0004843; GO:0005634; GO:0016579; 
#=GS D6WB38/51-86_123-210_247-457_552-590     AC D6WB38
#=GS D6WB38/51-86_123-210_247-457_552-590     OS Tribolium castaneum
#=GS D6WB38/51-86_123-210_247-457_552-590     DE Ubiquitin carboxyl-terminal hydrolase 3-like Protein
#=GS D6WB38/51-86_123-210_247-457_552-590     DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS E9HRX8/49-98_142-220_293-495_600-638     AC E9HRX8
#=GS E9HRX8/49-98_142-220_293-495_600-638     OS Daphnia pulex
#=GS E9HRX8/49-98_142-220_293-495_600-638     DE Uncharacterized protein
#=GS E9HRX8/49-98_142-220_293-495_600-638     DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS F6U9T3/75-230_425-603_735-779            AC F6U9T3
#=GS F6U9T3/75-230_425-603_735-779            OS Xenopus tropicalis
#=GS F6U9T3/75-230_425-603_735-779            DE Ubiquitin-specific peptidase 1
#=GS F6U9T3/75-230_425-603_735-779            DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana; Xenopus tropicalis; 
#=GS B4QZJ1/314-357_415-486_649-816_988-1046  AC B4QZJ1
#=GS B4QZJ1/314-357_415-486_649-816_988-1046  OS Drosophila simulans
#=GS B4QZJ1/314-357_415-486_649-816_988-1046  DE GD21429
#=GS B4QZJ1/314-357_415-486_649-816_988-1046  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS B4HZ84/313-357_415-486_649-816_988-1046  AC B4HZ84
#=GS B4HZ84/313-357_415-486_649-816_988-1046  OS Drosophila sechellia
#=GS B4HZ84/313-357_415-486_649-816_988-1046  DE GM12779
#=GS B4HZ84/313-357_415-486_649-816_988-1046  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GF SQ 6
Q8I077/313-356_414-485_648-815_987-1045          --------------SMGTLCNIGNSCYLNSVVYTLRFAPHFLHNLHHLI-----------------QDLNVVQQT-----STHQSVTEKLHELYNNLHGNEM-ADSTEPYHADT--------LLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRETNQSLI----------EERI----------------------RELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPV----PISGYDNADLQDKPSTYIQ------NSCITKEYFRGENKYSCNQCTGYTEAIRSISYEVLPRLLVIQLNRFS---------GGMEKVSTYVPTTFTLPCFCATCCELGEG-NKLHVYKLYSVITHVGATLTVGHYIAYVR-----ANYAHGGPDPIWYMCDDDKIKAMTQREFEELLSPT-RKITITPYLLFYARFDLQPQKA
D6WB38/51-86_123-210_247-457_552-590             ---------EAGDFPVATLANMGNTCFLNSVLYTLRYAPTFLHNLRSTS---S-------------KDLLALSSSDIIPKSKVQIVTEKLHELYVTMHNLEV-KESSDAYQPVA--------LLQAIREANSIFEGNHQQDAHELLVYLLDNIRETCDTKKKEKNAKEAISEEQVNGASVTDTEDACSVDGGGDNNKKKLGYNFVAEDFEGVTLRRTRCLECESVTERKEPFYDIPVPI----PVK--DTDFEPDSASEIYR------KACVTSEKLCDANKYLCEKCQRYNEASRDVLFEKLPNIMVLQLKRFTTSS------AGVQKVNTYLPTPLELECFCESCCNVEEDETPPHRYRLCCVIMHLGASMASGHYIAYVK-----AS-------DHWLECDDESVKPITSQEFKEELAFK-PNSTSTPYLLFYSKI-------
E9HRX8/49-98_142-220_293-495_600-638             RLEPSSNEKTPPLPPVATLLNLGNTCFLNSVLYTLRFTPGFAHLLHHLA-----------------TNNLVINPV----KRKTLVLTERLHELLQTLHNAEQKGDLSEPFQADA--------FLQALRDVNPLFQGNQQQDAHELLVCSLDYLREACQSD-----------NDQLPTVVVEET-----------NNSSSETRDFISDSFEGVTVLRTTCLECEYVTERKESFMDICVPI----TNDCPSGDEPQQSPSAFFA------STLMEVDFLRDTNKYWCEQCVRYNEARRSVHYEKLPRLLVLQLKRFSLS---FGSTVHTSKVNDYMPTPMQLDCFCEHCQAIPD--SPIHSYKLYAIIMHLGATMASGHYVAYTRVCPSVADYA-SCPRAKWLECDDEVIRVLRMRELEDLLSRKPRTSALTPYLLFYVQ--------
F6U9T3/75-230_425-603_735-779                    -----CCVKKESLIPFVGLNNLGNTCYLNSILQVLCYCPGFKNGIKLLSEIISKKVENLSKEREQTQDKDTVKHE----LPASYEVVCSLSSLIHSMEHLQI-TFLSNPENYDSELAAQPRRLLNTLREVNPMYEGYLQHDAQEVLQCILGNIQEACQVMK----------KEML----------------------ISSGFELVEKMFQGKLVLRTRCLECESFTERREDFQDISVPVLESEPPKLEDSSDISPDPRLETKTLRWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKIPDIVTIHLKCFSANSSEFDCFGGLSKVNTALLTPLNLSLEEWSTNQTKD------LYGLFAVVMHSGVTISSGHYTAYVR-----KEYL-----GKWLLFDDSEVKVTEEKDFMTAISPN-TLSTSTPYLLFYKKL-------
B4QZJ1/314-357_415-486_649-816_988-1046          --------------SMGTLCNIGNSCYLNSVVYTLRFAPHFLHSLHHLI-----------------QDLNVVQQT-----STHQSVTEKLHELYNNLHGNEM-ADSTEPYHADT--------LLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRETNQSLI----------EERI----------------------RELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPV----PISGYDNADLQDKPSTYIQ------NSCITKEYFRGENKYSCNQCTGYTEAIRSISYEVLPRLLVIQLNRFS---------GGMEKVSTYVPTTFTLPCFCATCCELGEG-NKLHVYKLYSVITHVGATLTVGHYIAYVR-----ANYAHGGPDPIWYMCDDDKIKAMTQREFEELLSPT-RKITITPYLLFYARFDLQPQKA
B4HZ84/313-357_415-486_649-816_988-1046          -------------PSMGTLCNIGNSCYLNSVVYTLRFAPHFLHSLHHLI-----------------QDLNVVQQT-----STHQSVTEKLHELYNNLHGNEM-ADSTEPYHADT--------LLHAIQDVNATFEGNQQQDAHEFLMCVLNCIRETNQSLI----------EERI----------------------RELNLNFFSSDFEGIVVLTTKCLSCETITRQKQGMLDISVPV----PISGYDNADLQDKPSTYIQ------NSCITKEYFRGENKYSCNQCTGYTEAIRSISYEVLPRLLVIQLNRFS---------GGMEKVSTYVPTTFTLPCFCATCCELGEG-NKLHVYKLYSVITHVGATLTVGHYIAYVR-----ANYAHGGPDPIWYMCDDDKIKAMTQREFEELLSPT-RKITITPYLLFYARFDLQPQKA
#=GC scorecons                                   00000000000111544692959959799976669674939363654640001000000000000057335633300001443437655966943466436303445564545400000000795666669447796497997949474944769656422000000000057450000000000000000000000343435644349694475595995994595676353995996000063411644434446632340000004344437343546992955934959929653774694656679569601100000046449956556955393555246434361022253959647759496654599959967000006453111213395369943674443577453664404357499999993521111111
#=GC scorecons_70                                _________________**_*_**_******__**_*_*_*_*_*__*___________________*_________________**__*__*___**__*_______*_____________**_*__***__***__******_*_*_*__***__*______________*______________________________*____***__*__*_**_**__*__*____**_***____*____*_______*_________________*_____***_*__*__*_**_**__**_**___*_**__**_____________**_*__**___*___________*_______*_*__**_*_***___***_****________________*__***__**_____**___**______*_*******__________
#=GC scorecons_80                                __________________*_*_**_******___*_*_*_*________________________________________________*__*______________________________*______*__*_*__*_**_*_*___*____*_________________*___________________________________*_*_____*_**_**__*__*____**_**____________________________________*______**_*__*__*_**_*___**__*______*__*______________**_____*___*___________________*_*__**_*_*_____***_**_*________________*___**___*_____*______________*******__________
#=GC scorecons_90                                __________________*_*_**_*_***____*___*_*________________________________________________*__*______________________________*______*____*__*_**_*_*___*____*_____________________________________________________*_*_____*_**_**__*_______**_**___________________________________________**_*__*__*_**_*_______*______*__*______________**_____*___*___________________*_*_____*_*_____***_**__________________*___**________________________*******__________
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