# STOCKHOLM 1.0
#=GF ID 3.90.70.10/FF/000211
#=GF DE Clan CA, family C1, cathepsin H-like cysteine peptidase
#=GF AC 3.90.70.10/FF/000211
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 89.696
#=GS A8JID7/266-479_520-636  AC A8JID7
#=GS A8JID7/266-479_520-636  OS Chlamydomonas reinhardtii
#=GS A8JID7/266-479_520-636  DE Cysteine endopeptidase
#=GS A8JID7/266-479_520-636  DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; 
#=GS A8BWI4/238-573          AC A8BWI4
#=GS A8BWI4/238-573          OS Giardia lamblia ATCC 50803
#=GS A8BWI4/238-573          DE Cathepsin L
#=GS A8BWI4/238-573          DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS A8BWI1/213-542          AC A8BWI1
#=GS A8BWI1/213-542          OS Giardia lamblia ATCC 50803
#=GS A8BWI1/213-542          DE Cathepsin L
#=GS A8BWI1/213-542          DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS A2ECZ7/183-432          AC A2ECZ7
#=GS A2ECZ7/183-432          OS Trichomonas vaginalis
#=GS A2ECZ7/183-432          DE Clan CA, family C1, cathepsin L or H-like cysteine peptidase
#=GS A2ECZ7/183-432          DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2EGT2/197-491          AC A2EGT2
#=GS A2EGT2/197-491          OS Trichomonas vaginalis
#=GS A2EGT2/197-491          DE Clan CA, family C1, cathepsin L-like cysteine peptidase
#=GS A2EGT2/197-491          DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2FP35/195-486          AC A2FP35
#=GS A2FP35/195-486          OS Trichomonas vaginalis
#=GS A2FP35/195-486          DE Clan CA, family C1, cathepsin H-like cysteine peptidase
#=GS A2FP35/195-486          DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS A2F844/196-470          AC A2F844
#=GS A2F844/196-470          OS Trichomonas vaginalis
#=GS A2F844/196-470          DE Clan CA, family C1, cathepsin L, S or H-like cysteine peptidase
#=GS A2F844/196-470          DR ORG; Eukaryota; Trichomonadida; Trichomonadidae; Trichomonas; Trichomonas vaginalis; 
#=GS E1F2X4/240-573          AC E1F2X4
#=GS E1F2X4/240-573          OS Giardia lamblia P15
#=GS E1F2X4/240-573          DE Cathepsin L
#=GS E1F2X4/240-573          DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GS E1F2X3/226-542          AC E1F2X3
#=GS E1F2X3/226-542          OS Giardia lamblia P15
#=GS E1F2X3/226-542          DE Cathepsin L
#=GS E1F2X3/226-542          DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; 
#=GF SQ 9
A8JID7/266-479_520-636          ---------ALAALQAAATSAWQRNAALVEAHNTLAGQLEG------AAPSPASPRYRLSLNHFAHMSHDQWAATSLGLGSRS---SRSGSSTGSSGLTAAKQLWRQRRAVGGGRALGRVYRRRLSDGELPAEVDWRGSGADGPGVKDQVSCGSCWAFGVVGALQGAW--------WKATGQSLSLSEQQLVDCA--WDYGNDGCMGGYIEPTLAYVIDG--GGIAQEADYPYLAQNS-WCRGP--TAPLVARFSDFVNVPPRDESALMEAVYLHGPVAVLMNAARVPFKFYSE-GVYHNEECGEDPDSMDHVVLLVGYGTTAQGVDYWLIKNSWSKYWGMDGYARITRKG--NDCGITTDPVFALV---
A8BWI4/238-573                  FGGNT---------LTRLLSAFSRQSSPKELSNDHATALKANVELIAKINSNSSYTFTAAPNHFSHIDIQTA--LSALTGFRR---TKRRIENGRNYIQSSSGEWHDVPLFDAD---------HLKNEDLPQELDWR-VRGIMNMAKDQVACGSCWTFGAIGTIEGRINKLRVVEEGLRHEPLKAYSEQSIVDCY--WGFGSFGCDGGDTLAALKWLVENNGGRVAFESEYPYLGQND-LCKEALFDHESFYFVTGYSAVKQYSIPSLKAAL-QDGPVAVSIGITE-SLLFYSG-GVYNDPACPYKYDDLSHAVLAVGYGTDDTYGDYWIVRNSWSPLWGMDGYFYLSMKD--NICGILTDASYAVVN--
A8BWI1/213-542                  -GRNSATDFHPRSFIEDIFTNFREPHGSDDQHD--------------NIRLNPSHTFTVSRTRMSETDFELF--LRTRTGLVRKTVEQERIARETQYFYEDIPEHSDTWYYSEE---------NQKRVQFPRQLDWR-VRGVITPVKDQAACGSCWSFGAAGTIEGRLNALK-WKRGERDTPLLRVSEQSIISCV--WNEDNNGCNGGLTYEALTAYINEFSGRIAYEMDSPYLGVES-LCNESI-FTSDHGRIRGVAHVKEYDIGAMKYAL-LSGPVSIAVAVTE-TFSWYSG-GVFNDPACASGVDDLAHAVLLVGWGTDEVAGDYWIVRNSWSNAWGIDGYMYLSMKN--NICGVLTCADYVMV---
A2ECZ7/183-432                  VGGNS--------------------------------------------------------------------------------------SGPTLRQSKMNTNYCPTKHIDFK-------------GDLPESFSWRNLPNVVAMPRDQANCGSCWAQAAATSISSQI--------SMRTNKTTKVSVQQIVDCT--WNDHNFACFDGFTDAAFRVMQQK-QMKLVLEDDYPYIGLGG-YCPTN--NHSMNVIVKDCWQVEPKDVEQLKRALYLYGPVAVAIATDS-SFAKYQGPGVF--PGKSATLDDLTHAVTLTGWGVAKDGTKYWEIQNSWSDFWGIDGYGLINQDF-DHDIGITLDAFVPVI---
A2EGT2/197-491                  ---------------------FPKSHSHKNVQK--------------NVRARLASG-EQTNGRFAHLDKSEF--MK----------HVEMQRKARNDRLKRRGDSQYCPTWKGT------------GKELPRTFSWRNNTQVVGKPRDQVACGSCWAFGTAEVLEGAF--------GIASKEFHEVSTNQIMDCTFGWGDNNYGCQGGEVDIALDALKNK-KIKIAKESDYPYLGASSQFCDNN--KDDYLGTVTGCYKIEQR-TRSVMEAIYTFGPLGIAINVIE-PMMLYTN-GVIDDETCTGAQSDLVHAVLLTGWAEI-DGKLAWEVKNSWSTYWGWDGYIYIQMEDQTKNCGVTTDAVAAVVSLK
A2FP35/195-486                  --------YDLF---------FPKKNVNTYAN---------------QVKSTKSYQ-TTTQNRFSHMTPSDW--LK----------SIKRSTNAKPWYDDEDPLWDQCTLFKGS-----------KDFVPPESFSWRDQPNIVTPPRDQVACGSCWAFGTAGLLESAF--------AIKTGKLRPVSTNQIMDCS--WDARNYGCQGGEIGPSLTSFMNK-SMKIATEKSYPYMGVSG-LCNSK--PEEYLGRVKSCFHVEKK-RNAVKEALYKFGPLGISINVIE-DMALYTG-GVFDEEECTGADDDLVHIVQLTGWRVI-DGKEAWEVKNSWSTNWGDEGYIYIQSEVQEKNCGVTSRAVGVI----
A2F844/196-470                  ------------------------------DN---------------GFQAVKQVEHRVHQNKFQEKRS------K----------FVNRLGGRRLTISNEDETICRKYTAKGL-------------KDLPAEFSWRDVPNVVGKPRDQVACGSCWAFGTAESLESQL--------ALKTGVFRELSVNQIMDCT--WDYNNSACGGGEAGPAFRSLINQ-NFKLFLEKDYPYIGVAG-YCNRN--PEHPVARVVDCIAIDKS-TQALKEALYQYGPASIGINVIE-SMSFYTK-GAVNDPTCTGAADDLVHEVLLTGWKIV-DGIECWEIKNSWSTHWGNEGYIYIQAENQEYNCGVTTDAKIPFI---
E1F2X4/240-573                  --GNT---------LIRLLSAFSKQTSSKELSNDHLAALKANAELIVQINSNSSYTFTAAPNHFSYIDAQTA--LSALTGFRR---TKRKIDNGRNYIQRDNGEWDDVPLFDAD---------HLKDEDLPRELDWR-VRGIMNMAKDQVACGSCWTFGAIGTIEGRINKLRVVEEGLRHEPLKAYSEQSIVDCY--WGFGSFGCDGGDTLAALKWLVENNRGRVAFESEYPYLGQND-LCKEALFDQEPSYSVTGYSAVKQYSIPSLKAAL-QDGPVAVSIGITE-SLLFYSG-GVYNDPACPHEYDDLAHAVLAVGYGTDDTYGDYWIVRNSWSPLWGMDGYFYLSMKD--NICGILTDASYAVVS--
E1F2X3/226-542                  --------------IEDILTNFRDLHGSDYQHD--------------SIRLDPSHTFTVSRARMSETDFELF--MRTRTGLVRKTVEQEKIARETQYFYEDIPEHSDTWYYSEE---------NQKRVQFPRQLDWR-VRGVITPVKDQAACGSCWSFGAAGTIEGRLNALK-WKRGERDTPLLRVSEQSIISCV--WNKDNNGCNGGLTYEALTEYINEFSGRIAYEIDSPYLGVES-LCNESI-FTSDHGRIRGVAHVKEYDIGAMKYAL-LSGPVSIAVAVTE-TFSWYSG-GVFNDPACANGIDDLAHAVLLVGWGTDEVAGDYWIVRNSWSNAWGIDGYMYLSMKN--NICGVLTCADYVMV---
#=GC scorecons                  0001000000000000011113221221122320000000000000023332242223232444332312110023101211100022232333432323333333332334330000000001122246944559914445443469966999995675554666441010000043543343349455756930094237369279252367324454023566393669967344049433002332333635423744323356639623399656464546045339550975455474332777395956596543134345947699993399379935643530044796565723455000
#=GC scorecons_70               __________________________________________________________________________________________________________________________________*____**_________***_******_**____**_____________________*___*_**___*___*_**_**____**_____________*_******_____*____________*_____*__________**___**__*_*_________*___**_____*____***_*_*_*_*__________*_*_****__**_***__*________***___*________
#=GC scorecons_80               __________________________________________________________________________________________________________________________________*____**__________**__*****__*___________________________*___*__*___*______*_**___________________*___**_*_____*__________________*__________*____**______________*___**__________***_*_*___*__________*___****__**_***____________*____*________
#=GC scorecons_90               __________________________________________________________________________________________________________________________________*____**__________**__*****______________________________*______*___*______*__*___________________*___**_______*_____________________________*____**______________*___*_______________*_*___*__________*___****__**__**____________*_____________
//