# STOCKHOLM 1.0
#=GF ID 3.90.1860.10/FF/000008
#=GF DE RNA-splicing ligase RtcB
#=GF AC 3.90.1860.10/FF/000008
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 73.261
#=GS Q9HT99/11-372      AC Q9HT99
#=GS Q9HT99/11-372      OS Pseudomonas aeruginosa PAO1
#=GS Q9HT99/11-372      DE Uncharacterized protein
#=GS Q9HT99/11-372      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS Q9HT99/11-372      DR GO; GO:0032411; GO:0042493; GO:0046677; 
#=GS A9SFZ7/99-499      AC A9SFZ7
#=GS A9SFZ7/99-499      OS Physcomitrella patens
#=GS A9SFZ7/99-499      DE Predicted protein
#=GS A9SFZ7/99-499      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS Q7ULP9/31-503      AC Q7ULP9
#=GS Q7ULP9/31-503      OS Rhodopirellula baltica SH 1
#=GS Q7ULP9/31-503      DE RNA-splicing ligase RtcB
#=GS Q7ULP9/31-503      DR ORG; Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula; Rhodopirellula baltica; 
#=GS Q7URB3/54-521      AC Q7URB3
#=GS Q7URB3/54-521      OS Rhodopirellula baltica SH 1
#=GS Q7URB3/54-521      DE RNA-splicing ligase RtcB
#=GS Q7URB3/54-521      DR ORG; Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula; Rhodopirellula baltica; 
#=GS A0A0J1BN58/27-503  AC A0A0J1BN58
#=GS A0A0J1BN58/27-503  OS Rhodopirellula islandica
#=GS A0A0J1BN58/27-503  DE RNA-splicing ligase RtcB
#=GS A0A0J1BN58/27-503  DR ORG; Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula; Rhodopirellula islandica; 
#=GS A0A0J1BKC2/30-500  AC A0A0J1BKC2
#=GS A0A0J1BKC2/30-500  OS Rhodopirellula islandica
#=GS A0A0J1BKC2/30-500  DE RNA-splicing ligase RtcB
#=GS A0A0J1BKC2/30-500  DR ORG; Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Rhodopirellula; Rhodopirellula islandica; 
#=GF SQ 6
Q9HT99/11-372              --------------GVALIASDSTW---IEGKAIQQLQTTAELDGMCRVVGLPDLHPGRGYPVGAAFFSVGRFYPALVGNDIGCGMALWETGLALGKLSADKLEKRLG---NLDLP-------------------------LDETWSDCIEALDL-P--------------------------------------AREHWRALGTIGGGNHFAELQQVETVFDQ---AALHALGLDADRLQLLVHSGSRGLGQAI-------LQEHVSLHGHA---------GLLDGSLEASAYLARHADALRFAEGNRQLIARRILERLR-----CDGLE-LLDINHNLVVPAQVD----------GVDG--WLHRKGATPADQG---------------VLVIPGS-RGDYSYLV---EPVPSAQSLFSLAHGAGRKWQRGECRERLAARF-SVDQLGRTRLGSRVICGDRQLIYEEAPEAYKGIDSVVGALLEAGLLRLVARLKPVLTYK-----
A9SFZ7/99-499              KNAPAT-GTRKTADAKLVVIANESL---VDATAIEQLNYVANLPGVVLAVGLPDLHAGASCPIGATIATNGLIYPSLVGSDIGCGMLLVETSLTSSSACKPRTLDRWAECIQLEEP-------------------------WDGDYSLMLERAGVEP--------------------------------------TQFDRESLGTVGRGNHFAELQVVERIENE---EAAATFGLTEKKVYICVHSGSRGYGESI-------LSMYSKQHGGA---------GTDLETEEAQSYLQAHDNACKWAKINRRIIATRLVDQLN-----GECTRFLLDITHNNVVKTSEDQNLTDAGVSEPVEGEIYLHRKGAAPTDQG---------------AVMIPGS-RGALSYLVLPNAPKQAARSGWSLAHGAGRRLARNAARVGGKAQYPDAKQLLVTELQSRVVCDDKGLLYEERPEAYKDAACVVADLVGDGLCRLVAVMKPILTYKMREIF
Q7ULP9/31-503              -------LLRTETTPPIRVFGTESIRETFDDLCLQQAVNSRLAPGVTDLVLNPDAHCGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQLDLPAEAIEDRKVRRALISAICQRTPTGAGKGQRSVTKARHVNRTLGKQLVTEGASDDVCHALGI-PTSWSHRCEDSYHVGHDDTQLALENRLDTILSHRHMSN-FSDKMQQLGSYGGGNHFGECEVVEVGDNDRAREVAQTFGLRDGNVAFLSHCGSRGFGHNLASGQFRTLQDKFDRWGIPLPAGDRQLVYAPLGTDEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGTRGNL-VYFISHNIARKEIVD----------NQPA--WVHRKGATRAMPGGHHSLANTPFAKSGHPILLPGNPRDGSAVMV---ADEGASASCYSVNHGAGRTLGRRHAKRVLDQA--TVDS---EFDSNDILSNCRKYPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK-----
Q7URB3/54-521              -------------CSPITVIGTDPIRQSFGSQTFQQAINSRLAPGVSQVVLNPDAHVGYGAPVGCVMVSPTHVYPGPVGVDIKCSMSLLQTDLPESEITDWKMRRRVIQAIAKRVPTGAGRGQRHVPKSRSVDGPLGFQVATEGASKSVLKKLGI-PKSWASRCEDASHTAPDGSVDTLAARLEWMGRERDKRDRLESKFRQLGSYGGGNHFGEAEIVSLSNKQYFRSLGEQWGLRDGCVAFLSHCGSRGFGHDWAMSQFRAMKTHFQSSGLAFPAGDPQLCYAEADSPEGQRYLCDMAMGANFATVNHLLINQLVLESFREVFPGIRGEL-IYFISHNIARQEPVD----------GRLQ--WVHRKGATRALPKGHEQLAGTEFESTGHPILLPGNPRDGSSIMV---AQRGASVSAFSVNHGAGRQLSRTKAKKNLNQT--VIDQ---NLLDHDVISNCRVYPRDEAPDAYQDFAEVLKSVTKAGLADEVARLKAKFVLK-----
A0A0J1BN58/27-503          E---ATALLRTETTAPIRVFGTESIRETFDDLCLQQAVNSRLAPGVTDLVLNPDAHCGYGAPVGCVMVSPTHIYPGPVGVDIKCSMSLLQLDLPAEAIEDRKVRRALISAICQRTPTGAGKGQRSVTKARHVNRTLGKQLVTEGASDDVCRALGI-PTGWAFRCEDSHHVGHDDTGLALESRLESILGHRHMSN-FSDKMQQLGSYGGGNHFGECEVVEVGDNDRAREVAQTFGLIDGNVAFLSHCGSRGFGHNLASGQFRTLQDKFDRWGIPLPAGDRQLVYAPLGTEEANDYLDDMALGANFATVNHLLINALVLEAFQEVIPGTRGNL-VYFISHNIARKEIVD----------NRPA--WVHRKGATRAMPGGHHSLANTPFAKSGHPILLPGNPRDGSAVMV---AEEGASASCYSVNHGAGRTLGRRHAKRVLDQA--TVDA---EFDSNDILSNCRKYPIDEAPAAYKDFNEVLRSVKSAGLASEVARLKARFVIK-----
A0A0J1BKC2/30-500          ----------GDNCSPITVIGTDPIRQSFGSQTFQQAINSRLAPGVSQVVLNPDAHVGYGAPVGCVMVSPTHVYPGPVGVDIKCSMSLLQTDLPEKEIADWKIRRRVIQAIAKRVPTGAGRGQRHVPKSRSVDGPLGFQVATEGASKSVLKKLGI-PKAWANRCEDASHSAPDGSTDTLAARLEWMGRDRDKRDRIESKFRQLGSYGGGNHFGEAEVVSLSQCPKLRSVGEQWGLRHGRVAFLSHCGSRGFGHDLAMGQFRAMKSHFQSSGLAFPAGDPQLCYAEANSPEGQRYLCDMAMGANFATVNHLLINQLVLESFREVFPGIRGEL-IYFISHNIARQEPVD----------GRQQ--WVHRKGATRAFPAGHEQLAGTDFESTGHPILLPGNPRDGSSIMV---ARPGASVSAFSVNHGAGRQLSRTKAKKNLNQM--VVDK---NLLDHDVISNCRVYPRDEAPDAYKDFTEVLKSVTEAGLAEEVARLTAKFVLK-----
#=GC scorecons             0000000001111143427454544211453244695344535697324934995939364979545464545995599499595949465495233424274355442352343922221222121212121112202113664343444466509112102222112111211001211222010112111103324254995496999959364953324410244434499344473555959999595342112221642543239261222212213423452964399244625456944963695345673642212234623055395994544425900000000004324006699999656255221122120211122455699529544636900063246539259659999936393366325353003564100424345755547254369694997643396346236994339957753653900000
#=GC scorecons_70          __________________*_______________**________**___*__**_*_*_*_***____*____**__**_**_*_*_*____*________*_____________*__________________________**_________*__*_____________________________________________**__******_*___*_______________**____*____*_****_*__________*_______*_*________________**__**_________*__*__**____**_________________*_**_______*________________*_******_*______________________**__*___*_**_______*__*__*__*****___*___*__________*__________*____*____**_*_****___*_______**___**_**_____*_____
#=GC scorecons_80          __________________*________________*________*____*__**_*_*___***_________**__**_**_*_*_*____*________*_____________*________________________________________*_____________________________________________**__*_****_*___*_______________**_________*_****_*__________________*__________________*___**_________*__*___*_____*_________________*_**_______*__________________*****_________________________**__*______*__________*__*__*****___*_________________________*____*_____*_*_***____*_______**___**_*______*_____
#=GC scorecons_90          ___________________________________*________*____*__**_*_*___*_*_________**__**_**_*_*_*____*______________________*________________________________________*_____________________________________________**__*_****_*___*_______________**_________*_****_*__________________*__________________*___**_________*__*___*_______________________*_**_______*__________________*****_________________________**__*______*__________*__*__*****___*____________________________________*_*_**_____*_______**___**________*_____
//