# STOCKHOLM 1.0
#=GF ID 3.90.1750.10/FF/000045
#=GF DE Ubiquitin ligase e3
#=GF AC 3.90.1750.10/FF/000045
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 42.739
#=GS P33202/1100-1254            AC P33202
#=GS P33202/1100-1254            OS Saccharomyces cerevisiae S288C
#=GS P33202/1100-1254            DE Ubiquitin fusion degradation protein 4
#=GS P33202/1100-1254            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS P33202/1100-1254            DR GO; GO:0000209; GO:0004842; GO:0005515; GO:0005634; GO:0005737; GO:0005739; GO:0006513; GO:0010994; GO:0051974; GO:1904855; 
#=GS P33202/1100-1254            DR EC; 2.3.2.26; 
#=GS Q10435/1248-1403_1488-1524  AC Q10435
#=GS Q10435/1248-1403_1488-1524  OS Schizosaccharomyces pombe 972h-
#=GS Q10435/1248-1403_1488-1524  DE Probable ubiquitin fusion degradation protein C12B10.01c
#=GS Q10435/1248-1403_1488-1524  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS Q10435/1248-1403_1488-1524  DR GO; GO:0005634; GO:0005829; GO:0006511; GO:0032991; GO:0061630; GO:0070647; 
#=GS Q10435/1248-1403_1488-1524  DR EC; 2.3.2.26; 
#=GS A0A0L8VM48/1100-1252        AC A0A0L8VM48
#=GS A0A0L8VM48/1100-1252        OS Saccharomyces sp. 'boulardii'
#=GS A0A0L8VM48/1100-1252        DE UFD4p Ubiquitin-protein ligase (E3)
#=GS A0A0L8VM48/1100-1252        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; 
#=GS H0GJB7/1100-1252            AC H0GJB7
#=GS H0GJB7/1100-1252            OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7
#=GS H0GJB7/1100-1252            DE Ufd4p
#=GS H0GJB7/1100-1252            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; 
#=GS A0A0L8RFT1/1102-1255        AC A0A0L8RFT1
#=GS A0A0L8RFT1/1102-1255        OS Saccharomyces eubayanus
#=GS A0A0L8RFT1/1102-1255        DE UFD4-like protein
#=GS A0A0L8RFT1/1102-1255        DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; 
#=GS N1P2I8/1100-1254            AC N1P2I8
#=GS N1P2I8/1100-1254            OS Saccharomyces cerevisiae CEN.PK113-7D
#=GS N1P2I8/1100-1254            DE Ufd4p
#=GS N1P2I8/1100-1254            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS N1P2I8/1100-1254            DR EC; 2.3.2.26; 
#=GS C8ZCF6/1100-1252            AC C8ZCF6
#=GS C8ZCF6/1100-1252            OS Saccharomyces cerevisiae EC1118
#=GS C8ZCF6/1100-1252            DE Ufd4p
#=GS C8ZCF6/1100-1252            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS B3LR74/1100-1252            AC B3LR74
#=GS B3LR74/1100-1252            OS Saccharomyces cerevisiae RM11-1a
#=GS B3LR74/1100-1252            DE Ubiquitin fusion degradation protein 4
#=GS B3LR74/1100-1252            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS A6ZZV5/1100-1254            AC A6ZZV5
#=GS A6ZZV5/1100-1254            OS Saccharomyces cerevisiae YJM789
#=GS A6ZZV5/1100-1254            DE Ubiquitin ligase e3
#=GS A6ZZV5/1100-1254            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS G2WI21/1100-1254            AC G2WI21
#=GS G2WI21/1100-1254            OS Saccharomyces cerevisiae Kyokai no. 7
#=GS G2WI21/1100-1254            DE K7_Ufd4p
#=GS G2WI21/1100-1254            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GS C7GRG9/1100-1252            AC C7GRG9
#=GS C7GRG9/1100-1252            OS Saccharomyces cerevisiae JAY291
#=GS C7GRG9/1100-1252            DE Ufd4p
#=GS C7GRG9/1100-1252            DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; 
#=GF SQ 11
P33202/1100-1254                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNVTTVPSDVETCLL---------M
Q10435/1248-1403_1488-1524          SVSFLLSRNPELSKNESSSILQFVSLHRQKIRISRKKIFNYALHLLATYAASENILEIEYEDEVGSGLGPTLEFYTSVSKEFTLNSLDIWRND--------QPNSKFVYQASGLFPSPIPLLGSSPENERKISLFFALGQFVARSIYDSRIISIQFNPLFFARNKGVQQQLEAFQNGFSSVFPYTSLQVLTEHELVTLFGT
A0A0L8VM48/1100-1252                ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNGTTVPSDVETCL-----------
H0GJB7/1100-1252                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNGTTVPSDVETCL-----------
A0A0L8RFT1/1102-1255                ---------------------------RRKLRISRKTVFATGLKILSKYGGSPDVLEIEYQEEAGTGLGPTLEFYSLVSKYFARKSLNMWRCNSYSYRSEMNMDTTDDYITTLLFPEP---LDPTANNEKILELFGYLGTFVARSLLDNRILDFRFSRVFF-------ELLHRMCTPNLTTVPSDVESCL----------S
N1P2I8/1100-1254                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNVTTVPSDVETCLL---------M
C8ZCF6/1100-1252                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNGTTVPSDVETCL-----------
B3LR74/1100-1252                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNGTTVPSDVETCL-----------
A6ZZV5/1100-1254                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNVTTVPSDVETCLL---------M
G2WI21/1100-1254                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNVTTVPSDVETCLL---------M
C7GRG9/1100-1252                    ---------------------------RRKLRISRKTIFATGLKILSKYGSSPDVLEIEYQEEAGTGLGPTLEFYSVVSKYFARKSLNMWRCNSYSYRSEMDVDTTDDYITTLLFPEP---LNPFSNNEKVIELFGYLGTFVARSLLDNRILDFRFSKVFF-------ELLHRMSTPNGTTVPSDVETCL-----------
#=GC scorecons                      000000000000000000000000000959599999489545955954955945699999569595999999999549993954599569945333333334455434945539994900094535599638499349949999954959955559545990000000549545454435559444344900000000001
#=GC scorecons_70                   ___________________________*_*_*****_**___*__*__*__*__******_**_*_*********__***_*___**_***_________________*____***_*___*_____***_*_**__**_*****__*_**____*___**_________*___________*______*___________
#=GC scorecons_80                   ___________________________*_*_*****_**___*__*__*__*___*****__*_*_*********__***_*___**__**_________________*____***_*___*_____**__*_**__**_*****__*_**____*___**_________*___________*______*___________
#=GC scorecons_90                   ___________________________*_*_*****_**___*__*__*__*___*****__*_*_*********__***_*___**__**_________________*____***_*___*_____**____**__**_*****__*_**____*___**_________*___________*______*___________
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