# STOCKHOLM 1.0 #=GF ID 3.90.1140.10/FF/000008 #=GF DE U6 snRNA phosphodiesterase #=GF AC 3.90.1140.10/FF/000008 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 90.388 #=GS A0A178URF1/68-281 AC A0A178URF1 #=GS A0A178URF1/68-281 OS Arabidopsis thaliana #=GS A0A178URF1/68-281 DE U6 snRNA phosphodiesterase #=GS A0A178URF1/68-281 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9LU57/68-281 AC Q9LU57 #=GS Q9LU57/68-281 OS Arabidopsis thaliana #=GS Q9LU57/68-281 DE U6 snRNA phosphodiesterase #=GS Q9LU57/68-281 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A9T750/78-287 AC A9T750 #=GS A9T750/78-287 OS Physcomitrella patens #=GS A9T750/78-287 DE U6 snRNA phosphodiesterase #=GS A9T750/78-287 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; #=GS Q0DZ34/9-185 AC Q0DZ34 #=GS Q0DZ34/9-185 OS Oryza sativa Japonica Group #=GS Q0DZ34/9-185 DE Os02g0651000 protein #=GS Q0DZ34/9-185 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS A5BG02/65-278 AC A5BG02 #=GS A5BG02/65-278 OS Vitis vinifera #=GS A5BG02/65-278 DE U6 snRNA phosphodiesterase #=GS A5BG02/65-278 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS F4P6D0/59-257 AC F4P6D0 #=GS F4P6D0/59-257 OS Batrachochytrium dendrobatidis JAM81 #=GS F4P6D0/59-257 DE U6 snRNA phosphodiesterase #=GS F4P6D0/59-257 DR ORG; Eukaryota; Fungi; Chytridiomycota; Chytridiomycetes; Rhizophydiales; Batrachochytrium; Batrachochytrium dendrobatidis; #=GS F6WVC9/63-258 AC F6WVC9 #=GS F6WVC9/63-258 OS Ciona intestinalis #=GS F6WVC9/63-258 DE U6 snRNA phosphodiesterase #=GS F6WVC9/63-258 DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; #=GS I1J6I2/61-273 AC I1J6I2 #=GS I1J6I2/61-273 OS Glycine max #=GS I1J6I2/61-273 DE U6 snRNA phosphodiesterase #=GS I1J6I2/61-273 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS V4LI85/77-290 AC V4LI85 #=GS V4LI85/77-290 OS Eutrema salsugineum #=GS V4LI85/77-290 DE U6 snRNA phosphodiesterase #=GS V4LI85/77-290 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; #=GS A0A1J3ERA2/76-289 AC A0A1J3ERA2 #=GS A0A1J3ERA2/76-289 OS Noccaea caerulescens #=GS A0A1J3ERA2/76-289 DE U6 snRNA phosphodiesterase #=GS A0A1J3ERA2/76-289 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; #=GS R0GB02/76-289 AC R0GB02 #=GS R0GB02/76-289 OS Capsella rubella #=GS R0GB02/76-289 DE U6 snRNA phosphodiesterase #=GS R0GB02/76-289 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS A0A2T7F9S0/65-278 AC A0A2T7F9S0 #=GS A0A2T7F9S0/65-278 OS Panicum hallii var. hallii #=GS A0A2T7F9S0/65-278 DE U6 snRNA phosphodiesterase #=GS A0A2T7F9S0/65-278 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; Panicum hallii var. hallii; #=GS I1IC41/58-272 AC I1IC41 #=GS I1IC41/58-272 OS Brachypodium distachyon #=GS I1IC41/58-272 DE U6 snRNA phosphodiesterase #=GS I1IC41/58-272 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS D7MQY0/43-256 AC D7MQY0 #=GS D7MQY0/43-256 OS Arabidopsis lyrata subsp. lyrata #=GS D7MQY0/43-256 DE Uncharacterized protein #=GS D7MQY0/43-256 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A194YSF4/63-276 AC A0A194YSF4 #=GS A0A194YSF4/63-276 OS Sorghum bicolor #=GS A0A194YSF4/63-276 DE U6 snRNA phosphodiesterase #=GS A0A194YSF4/63-276 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A368QQK7/63-276 AC A0A368QQK7 #=GS A0A368QQK7/63-276 OS Setaria italica #=GS A0A368QQK7/63-276 DE U6 snRNA phosphodiesterase #=GS A0A368QQK7/63-276 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS A0A1D6HET6/63-286 AC A0A1D6HET6 #=GS A0A1D6HET6/63-286 OS Zea mays #=GS A0A1D6HET6/63-286 DE U6 snRNA phosphodiesterase #=GS A0A1D6HET6/63-286 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0B2QV96/61-273 AC A0A0B2QV96 #=GS A0A0B2QV96/61-273 OS Glycine soja #=GS A0A0B2QV96/61-273 DE U6 snRNA phosphodiesterase #=GS A0A0B2QV96/61-273 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A2S3GRW6/65-278 AC A0A2S3GRW6 #=GS A0A2S3GRW6/65-278 OS Panicum hallii #=GS A0A2S3GRW6/65-278 DE U6 snRNA phosphodiesterase #=GS A0A2S3GRW6/65-278 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Panicinae; Panicum; Panicum sect. Panicum; Panicum hallii; #=GS K3XWZ8/220-433 AC K3XWZ8 #=GS K3XWZ8/220-433 OS Setaria italica #=GS K3XWZ8/220-433 DE U6 snRNA phosphodiesterase #=GS K3XWZ8/220-433 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Paniceae; Cenchrinae; Setaria; Setaria italica; #=GS B6SNB8/63-276 AC B6SNB8 #=GS B6SNB8/63-276 OS Zea mays #=GS B6SNB8/63-276 DE U6 snRNA phosphodiesterase #=GS B6SNB8/63-276 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0R0LD64/29-241 AC A0A0R0LD64 #=GS A0A0R0LD64/29-241 OS Glycine max #=GS A0A0R0LD64/29-241 DE Uncharacterized protein #=GS A0A0R0LD64/29-241 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GF SQ 22 A0A178URF1/68-281 NFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHL---VEADVPLSILCKDDQKFER-ALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQK-R----------YLIDFN-KWEVFVNDDHTRSFLSLEITTSG-LSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDI-RTSLKGAVDVELRKLR-AGGCVQNRIFTSKFCGIECKIGNKTHKICK Q9LU57/68-281 NFPHVDGNYALHVYVPVCIPPLPKKEIVCFLKKVASVVPHLHL---VEADVPLSILCKDDQKFER-ALGREFHISLGRNVPLRVHQINSVISMLRQKLQLQK-R----------YLIDFN-KWEVFVNDDHTRSFLSLEITTSG-LSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDI-RTSLKGAVDVELRKLR-AGGCVQNRIFTSKFCGIECKIGNKTHKICK A9T750/78-287 AFPHVEGNYALHVYIPVVLSASIRTKIALYLQKAVSLFPSLKS---TEDD----DLSANVGSNQGIKLATEFHISLGRTVPIRIHQIDTMVHLLRRKFEGQK-R----------FLVEFG-TWEVFVNDDRTRSFLSLEVVATG-YAEIKKQVSLVDHVYTLHGLPTFYPNPRPHISLAWALGDV-KDALATVAQELNTMAC-FREEKSACFFTSLATKVECRIGQKLHPIW- Q0DZ34/9-185 --------------------------------------PDLYA---IDADYALSELCKDEQKLEKVLLSREFHVSLGRTVAIQVHQIESLVAMLRQKFRSQQ-R----------YWMDFN-KWEHFVNDDCTRSFLSLEVTSTG-LPEISKQITMVDDVYRLHGLPEFYKNPRPHISLAWALGDV-SCKLKQAIKEIEKSQS-SLGTSQISNLRCKFSHVVCKIGKKVYDICK A5BG02/65-278 SFPHVEGNYALHVFIPVYIPSSPKKELVQYLKKVMSLVPGLHV---VDVDIPLNILCKDDNKLEQVALGREFHISLGRTVPIRVHQIDSIVTMLRQKLQFQR-R----------YWIDFN-KWEVFVNDDQTRSFLSVEVIAGG-LAEITRQIQAVNEVYRLHNLPEFYEDPRPHISLVWALGNI-SDSLKRAVEEMRRHIN-VGGSVQKRIFTCKFNGIECKIGNKTYKIC- F4P6D0/59-257 TVAHIEGNWATYIYIPIELQEDLQAELKDWIKQATTQFPSWHSHIQLDSNDSL-----------------GLHVSLCQTAYLKVFQIDRFMALLEQQIGLQS-R----------FTVSFN-GVSSYVNDEQTRSFVGMDI-GHG-HEELLELVQCVDLALTAFHQPPFYKNPRFHASIVWSPTTR-ASSFDNPIESIPDSLRDIPKKLHNTLF--LVRSVVCKSGNKLKQFDL F6WVC9/63-258 SFQHVKGNWATFLYIP--YPNPHCNELRSYVEDLLQF-----------------------QGLDHWKIVDDFHLSVSRTSAIPHHFIEPLVEGIQGCAQKLS-P----------VILNFSCDLKFYVNDEKTRSFCGFEVTSPFILAKLQTLVDHINKPLKDYKCDSYYENPSFHISISWTLGNIFEQNWKKQLEIFQTHWS-EVFIESPELFSFEANNLVCKCGNRLFTFEI I1J6I2/61-273 SFPHVDGNYALHVYIPIYISSPSKKELVAFLKKISSREPRLNV---VDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQH-Q----------YWIDFN-KWEVFVNDDHTRSFLSAEVVQGG-LVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDI-AHSLKKIVDEEM-KCA-VGKSLKKCIFSCKFKSIECKIGKKAYTIC- V4LI85/77-290 NFPHVDGNYALHVYIPVSIPLLPKKEIVCFLKRVASAVPNLHL---VEADVPLSILCKDDQKLER-ALGREFHISLGRSVPLRVHQINSVVSLLRQKLQFHK-R----------YWIDFN-KWEVFVNDDCTRSFLSLEITTSG-LSEICKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDI-RASLKGAVDRELSKLR-AGGCLQNRIFTTKFCGIECKIGNKTHKICK A0A1J3ERA2/76-289 NFPHVDGNYALHVYIPVSIPLLAKKEMVCFLKRVASVVPHLHL---VEADVPLNILCKDDQKLEH-ALGREFHISLGRSVPLRVHQINSVVSMLRQKLQLQK-R----------YLIDFN-KWEVFVNDDCTRSFLSLEITTSG-LSEISTQIDAVNEVYRLHNLPEFYKDPRPHISLVWALGDI-RTSLKGAVDGELRKLR-AGGCAKNRIFTSKFCGIDCKIGNKTHKICK R0GB02/76-289 NFPHVDGNYALHVYIPVIIPPLPKKEIVCFLKRVASVVPQLHL---VEADVPLSILCKDDHKFER-ALGREFHISLGRSVPLRVHQISSVVSMLKQKLQFHK-R----------YLIDFN-KWEVFVNDDCTRSFLSLEITTSG-LSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDI-RNSLKGAVDGELRKLR-AGGCVQNRIFATKFSGIECKIGNKTHKICK A0A2T7F9S0/65-278 SFPHVEGSYALHVYIPVVIPSDAKKQLALAMKRAASLVPDLYA---VDADYALSELCKDEHKLEKVLLSREFHVSLGRPVAVQVHQIDSFIAMLRQKFQSQQ-R----------YWMEFN-KWEHFVNDDCTRSFLSLEVTRTG-LPEISKQILVVDEVYRLHGLPEFYKNPRPHISLVWALGDV-SGKLKQAIKDIEKYQS-STSSLQKCNVRCKFSRVVCKVGKKLHDIC- I1IC41/58-272 SFPHVEGNYALHVYIPVVIPFDARKQLTIVMRRAASLVPDLYA---VDADYALAELCKDEQKLEKVLLAREFHVSLGRTVAIQVHQIDSIVAMLRQKFQSQQSR----------YWMDFT-KWEHFVNDDSTRSFLSLEVTRTG-LSEITKQVHMVDEVYRLHGLPEFYKNPRPHISLVWALGDI-SSKLKQATKEIENFQN-SVNSYKNCNLRCKFSRVVCKVGNKVYDIC- D7MQY0/43-256 NFPHVDGNYALHVYIPVSIPPLPKKEIVCFLKRVASVVPHLHL---VEADVPLSILCKDDQKFER-ALGREFHISLGRSVPLRVHQINSVVSMLRQKLQLQK-R----------YAIDFN-KWEVFVNDDCTRSFLSLEITTSG-LSEISKQIDAVNEVYKLHNLPEFYKDPRPHISLVWALGDI-RTSLKGAVDAELRKLR-AGGCVQNRIFTSKFGGIECKIGNKTHKICK A0A194YSF4/63-276 SFPHVEGNYAVHVYIPVVIPSDAMKQLALSMKRAASLVPDLYA---VDADYALSELCKDEQKLEKMLLSREFHVSLGRPVAIQVHQIDSFIAMLRQKFQTQQ-R----------YWMEFN-KWEHFVNDDCTRSFLSLEVTRTG-LPEIRKQILMVDEVYRLHGLPEFYTNPRPHISFVWALGDV-SSKLKQAIKDIEKYQS-SMSSLQKCNVRCKFSRVVCKVGKKVHDIC- A0A368QQK7/63-276 SFPHVEGNYAVHVYIPVVIPSDAKKQLALAMKRAASLVPDLYA---VDADYALSELCKDEQKLEKVLLSREFHVSLGRPVAVQVHQIDSFVAMLRQKFQLQQ-R----------YWMEFN-KWEHFVNDDCTRSFLSLEVTRTG-LPELSKQILMVDEVYRLHGLPEFYKNPRPHISLVWALGDI-SSKLKQAIKDIEKYQS-SMSSLQKCNVRCKFSRVVCKVGKKVYDIC- A0A1D6HET6/63-286 SFPHVEGNYAVHVYIPVVIPSDARKQLALSMKRAASLVPDLYA---VDADYALSELCKDEQKLEKVLLSREFHVSLGRPVAVQVHQIDSFIAMLRQKFQPQQ-QLVISKNFTAWYWMEFN-KWEHFVNDDCTRSFVSLEVTRTG-LPEITRQILMVDEVYRLHGLPEFYTNPRPHISLVWALGDV-SGKLKQALKDIEKYQS-SMSSLQKCNVRCKFSRVVCKVGKKVHDIC- A0A0B2QV96/61-273 SFPHVDGNYALHVYIPIYISSPSKKELVAFLKKISSREPRLNV---VDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQH-Q----------YWIDFN-KWEVFVNDDHTRSFLSAEVVQGG-LVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDI-AHSLKKIVDEEM-KCA-VGKSLKKCIFSCKFKSIECKIGKKAYTIC- A0A2S3GRW6/65-278 SFPHVEGNYALHVYIPVVIPSDAKKQLALAMKRAASLVPDLHA---VDADYALSELCKDEHKLEKVLLSREFHVSLGRPVAVQVHQIDSFIAMLRQKFQSQQ-R----------YWMEFN-KWEHFVNDDCTRSFLSLEVTRTG-LPEISKQILVVDEVYRLHGLPEFYKNPRPHISLVWALGDV-SGKLKQAIKDIEKYQS-STSSLQKCNVRCKFSRVVCKVGKKLHDIC- K3XWZ8/220-433 SFPHVEGNYAVHVYIPVVIPSDAKKQLALAMKRAASLVPDLYA---VDADYALSELCKDEQKLEKVLLSREFHVSLGRPVAVQVHQIDSFVAMLRQKFQLQQ-R----------YWMEFN-KWEHFVNDDCTRSFLSLEVTRTG-LPELSKQILMVDEVYRLHGLPEFYKNPRPHISLVWALGDI-SSKLKQAIKDIEKYQS-SMSSLQKCNVRCKFSRVVCKVGKKVYDIC- B6SNB8/63-276 SFPHVEGNYAVHVYIPVVIPSDARKQLALSMKRAASLVPDLYA---VDADYALSELCKDEQKLEKVLLSREFHVSLGRPVAVQVHQIDSFIAMLRQKFQPQQ-Q----------YWMEFN-KWEHFVNDDCTRSFVSLEVTRTG-LPEITRQILMVDEVYRLHGLPEFYTNPRPHISLVWALGDV-SGKLKQALKDIEKYQS-SMSSLQKCNVRCKFSRVVCKVGKKVHDIC- A0A0R0LD64/29-241 SFPHVDGNYALHVYIPIYISSPSKKELVAFLKKISSREPRLNV---VDVDVPLNILCQNDEKLEQVTLGREFHISLGRTVPIRVHQIDSVVSMLRQKLQIQH-Q----------YWIDFN-KWEVFVNDDHTRSFLSAEVVQGG-LVEITKQIEVVNAIYRLHNLPEFYKDPRPHISLAWALGDI-AHSLKKIVDEEM-KCA-VGKSLKKCIFSCKFKSIECKIGKKAYTIC- #=GC scorecons 57677577674667775255333455542356544633736430005646246336544445564236457896987857565787966564687765637406000000000064559706674899974999967587534707487466733864666674676895697698976978866043477455544333340333445444534664465985958454750 #=GC scorecons_70 _*_**_**_*_*****_______________*______*_*________*__*__________*___*__********_*___****_*_*_*****_*_*__*__________*___**_***_*****_******_**___*_*_**__**__**_**_**_**_**_********_*****_____**____________________________*_**_*_*___*__ #=GC scorecons_80 ___**_**_*___***______________________*_______________________________***_**_*_____****______*_*______________________*______*****_****_*_**___*___*____*__*______*__*_**__**_****_****_______*______________________________**_*_*______ #=GC scorecons_90 _______________________________________________________________________**_**_*________*______*________________________*_______***__****___*________________*___________**__*__*_*__*_________________________________________**_*_*______ //