# STOCKHOLM 1.0
#=GF ID 3.40.960.10/FF/000003
#=GF DE RAP domain-containing protein, chloroplastic
#=GF AC 3.40.960.10/FF/000003
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 38.986
#=GS Q8VZE7/568-668      AC Q8VZE7
#=GS Q8VZE7/568-668      OS Arabidopsis thaliana
#=GS Q8VZE7/568-668      DE RAP domain-containing protein, chloroplastic
#=GS Q8VZE7/568-668      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q8VZE7/568-668      DR GO; GO:0003723; GO:0042646; GO:1901259; 
#=GS Q84MH1/535-634      AC Q84MH1
#=GS Q84MH1/535-634      OS Oryza sativa Japonica Group
#=GS Q84MH1/535-634      DE RAP domain-containing protein, chloroplastic
#=GS Q84MH1/535-634      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q84MH1/535-634      DR GO; GO:0009507; GO:1901259; 
#=GS A0A0D3B4H0/549-651  AC A0A0D3B4H0
#=GS A0A0D3B4H0/549-651  OS Brassica oleracea var. oleracea
#=GS A0A0D3B4H0/549-651  DE Uncharacterized protein
#=GS A0A0D3B4H0/549-651  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS V4MGS9/569-669      AC V4MGS9
#=GS V4MGS9/569-669      OS Eutrema salsugineum
#=GS V4MGS9/569-669      DE Uncharacterized protein
#=GS V4MGS9/569-669      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A087GMS0/567-667  AC A0A087GMS0
#=GS A0A087GMS0/567-667  OS Arabis alpina
#=GS A0A087GMS0/567-667  DE Uncharacterized protein
#=GS A0A087GMS0/567-667  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Arabideae; Arabis; Arabis alpina; 
#=GS R0HRR9/568-669      AC R0HRR9
#=GS R0HRR9/568-669      OS Capsella rubella
#=GS R0HRR9/568-669      DE Uncharacterized protein
#=GS R0HRR9/568-669      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7LEA6/564-666      AC D7LEA6
#=GS D7LEA6/564-666      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LEA6/564-666      DE Uncharacterized protein
#=GS D7LEA6/564-666      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A0D9VVE8/524-623  AC A0A0D9VVE8
#=GS A0A0D9VVE8/524-623  OS Leersia perrieri
#=GS A0A0D9VVE8/524-623  DE Uncharacterized protein
#=GS A0A0D9VVE8/524-623  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; 
#=GS A0A0E0NWR6/535-634  AC A0A0E0NWR6
#=GS A0A0E0NWR6/535-634  OS Oryza rufipogon
#=GS A0A0E0NWR6/535-634  DE Uncharacterized protein
#=GS A0A0E0NWR6/535-634  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0E0D2B4/534-633  AC A0A0E0D2B4
#=GS A0A0E0D2B4/534-633  OS Oryza meridionalis
#=GS A0A0E0D2B4/534-633  DE Uncharacterized protein
#=GS A0A0E0D2B4/534-633  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0D9Z945/536-635  AC A0A0D9Z945
#=GS A0A0D9Z945/536-635  OS Oryza glumipatula
#=GS A0A0D9Z945/536-635  DE Uncharacterized protein
#=GS A0A0D9Z945/536-635  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS A0A0D3FK04/558-657  AC A0A0D3FK04
#=GS A0A0D3FK04/558-657  OS Oryza barthii
#=GS A0A0D3FK04/558-657  DE Uncharacterized protein
#=GS A0A0D3FK04/558-657  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS I1PCE3/534-633      AC I1PCE3
#=GS I1PCE3/534-633      OS Oryza glaberrima
#=GS I1PCE3/534-633      DE Uncharacterized protein
#=GS I1PCE3/534-633      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A2XI62/535-634      AC A2XI62
#=GS A2XI62/535-634      OS Oryza sativa Indica Group
#=GS A2XI62/535-634      DE Uncharacterized protein
#=GS A2XI62/535-634      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A0D3FK07/532-631  AC A0A0D3FK07
#=GS A0A0D3FK07/532-631  OS Oryza barthii
#=GS A0A0D3FK07/532-631  DE Uncharacterized protein
#=GS A0A0D3FK07/532-631  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GF SQ 15
Q8VZE7/568-668              -ITSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALVEKKVALEIDGPTHFSRNSGLPLGHTMLKRRYVAAAGWKVVSLSLQEWEEHEGSHEQLEYLREILT-
Q84MH1/535-634              KMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
A0A0D3B4H0/549-651          KITSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALVEKKVALEIDGPTHFSRNTGLPLGHTMLKRRYVTAAGWKVVSLSLQEWEEHEGSHEQLEYLREILNG
V4MGS9/569-669              -ITSSFQKEVGRLLISTGLDWVKEYDVDGYTVDVALVEKKVALEIDGPTHFSRNTGLPLGHTMLKRRYVSAAGWKVVSLSHQEWEEHEGSHEQLEYLREILD-
A0A087GMS0/567-667          -ITSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALVEKKVALEIDGPTHFSRNYGQPLGHTMLKRRYVTAAGWEVVSLSLQEWEEHEGSHEQLEYLREILK-
R0HRR9/568-669              KITSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALIEKKVALEIDGPTHFSRNTGIPLGHTMLKRRYVAAAGWKVVSLSLQEWEEHEGSHEQLEYLREILT-
D7LEA6/564-666              KISSSFQKEVGRLLISTGLDWAKEHDVDGYTVDVALVDKKVALEIDGPTHFSRNSGIPLGHTMLKRRYVAAAGWKVVSLSLQEWEEHEGSHEQLEYLREILNG
A0A0D9VVE8/524-623          KMTSSFQKEVGRVLCSTGHEWTREYTVDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTSFKRRYISAAGWNLVSLSHQEWEKLEGEFEQLEYLRRL---
A0A0E0NWR6/535-634          KMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
A0A0E0D2B4/534-633          KMTSSFQKEVGRLLCSTGHEWNKEYTVDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
A0A0D9Z945/536-635          KMTSSFQKEVGRLLCSTGHEWNKEYTVDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
A0A0D3FK04/558-657          KMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
I1PCE3/534-633              KMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
A2XI62/535-634              KMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
A0A0D3FK07/532-631          KMTSSFQKEVGRLLCSTGHEWNKEYTIDGYTVDAVLVDEKLAFEIDGPSHFSRNLGTPLGHTAFKRRYIAAAGWNLVSLSHQEWENLEGEFEQLEYLRRI---
#=GC scorecons              4689999999998959995795897579999996698769696999996999994949999956999976999956999959999559955999999958200
#=GC scorecons_70           _*************_***_**_***_*******__***_*********_*****_*_*****_******_****_*****_****__**__*******_*___
#=GC scorecons_80           __************_***__*_**__*******__**__*_*_*****_*****_*_*****__****__****__****_****__**__*******_*___
#=GC scorecons_90           ___***********_***__*_**___******__**__*_*_*****_*****_*_*****__****__****__****_****__**__*******_*___
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