# STOCKHOLM 1.0 #=GF ID 3.40.50.410/FF/000093 #=GF DE Transcription initiation factor TFIIH subunit #=GF AC 3.40.50.410/FF/000093 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 80.302 #=GS Q12004/19-253 AC Q12004 #=GS Q12004/19-253 OS Saccharomyces cerevisiae S288C #=GS Q12004/19-253 DE General transcription and DNA repair factor IIH subunit TFB4 #=GS Q12004/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS Q12004/19-253 DR GO; GO:0000112; GO:0000439; GO:0005675; GO:0006289; GO:0006366; GO:0070816; #=GS B3RK02/6-208 AC B3RK02 #=GS B3RK02/6-208 OS Trichoplax adhaerens #=GS B3RK02/6-208 DE Uncharacterized protein #=GS B3RK02/6-208 DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; #=GS T1FMV6/3-224 AC T1FMV6 #=GS T1FMV6/3-224 OS Helobdella robusta #=GS T1FMV6/3-224 DE Uncharacterized protein #=GS T1FMV6/3-224 DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; #=GS A0A1D8PPE3/19-276 AC A0A1D8PPE3 #=GS A0A1D8PPE3/19-276 OS Candida albicans SC5314 #=GS A0A1D8PPE3/19-276 DE TFIIH/NER complex subunit #=GS A0A1D8PPE3/19-276 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida; Candida albicans; #=GS Q75B93/19-254 AC Q75B93 #=GS Q75B93/19-254 OS Eremothecium gossypii ATCC 10895 #=GS Q75B93/19-254 DE General transcription and DNA repair factor IIH subunit TFB4 #=GS Q75B93/19-254 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; #=GS R9XGG7/19-254 AC R9XGG7 #=GS R9XGG7/19-254 OS Saccharomycetaceae sp. 'Ashbya aceri' #=GS R9XGG7/19-254 DE AaceriADL323Cp #=GS R9XGG7/19-254 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; #=GS H0GPY2/19-253 AC H0GPY2 #=GS H0GPY2/19-253 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GPY2/19-253 DE Tfb4p #=GS H0GPY2/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS J5PBG8/19-253 AC J5PBG8 #=GS J5PBG8/19-253 OS Saccharomyces kudriavzevii IFO 1802 #=GS J5PBG8/19-253 DE TFB4-like protein #=GS J5PBG8/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; #=GS A0A0L8VG24/1093-1327 AC A0A0L8VG24 #=GS A0A0L8VG24/1093-1327 OS Saccharomyces sp. 'boulardii' #=GS A0A0L8VG24/1093-1327 DE SEC8p 121 kDa subunit of the exocyst complex #=GS A0A0L8VG24/1093-1327 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; #=GS A0A0L8RAZ0/19-256 AC A0A0L8RAZ0 #=GS A0A0L8RAZ0/19-256 OS Saccharomyces eubayanus #=GS A0A0L8RAZ0/19-256 DE TFB4-like protein #=GS A0A0L8RAZ0/19-256 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; #=GS A6ZWU5/19-253 AC A6ZWU5 #=GS A6ZWU5/19-253 OS Saccharomyces cerevisiae YJM789 #=GS A6ZWU5/19-253 DE Transcription initiation factor TFIIH subunit #=GS A6ZWU5/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C8ZJ81/19-253 AC C8ZJ81 #=GS C8ZJ81/19-253 OS Saccharomyces cerevisiae EC1118 #=GS C8ZJ81/19-253 DE Tfb4p #=GS C8ZJ81/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C7GY43/19-253 AC C7GY43 #=GS C7GY43/19-253 OS Saccharomyces cerevisiae JAY291 #=GS C7GY43/19-253 DE Tfb4p #=GS C7GY43/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS G2WPN0/19-253 AC G2WPN0 #=GS G2WPN0/19-253 OS Saccharomyces cerevisiae Kyokai no. 7 #=GS G2WPN0/19-253 DE K7_Tfb4p #=GS G2WPN0/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B3LLB1/19-253 AC B3LLB1 #=GS B3LLB1/19-253 OS Saccharomyces cerevisiae RM11-1a #=GS B3LLB1/19-253 DE RNA polymerase II transcription factor B subunit 4 #=GS B3LLB1/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS H0H2D2/19-253 AC H0H2D2 #=GS H0H2D2/19-253 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0H2D2/19-253 DE Tfb4p #=GS H0H2D2/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS N1P251/19-253 AC N1P251 #=GS N1P251/19-253 OS Saccharomyces cerevisiae CEN.PK113-7D #=GS N1P251/19-253 DE Tfb4p #=GS N1P251/19-253 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GF SQ 17 Q12004/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- B3RK02/6-208 --SGENLLILVIDTNPLAWLPF----AAEMDFTRYIENIVVYINSHLMMDHRNSIAVIASHVNKSCYLYSPHMDNWIKNTNSNS---TVNI-----------AKDGRHEELSHINYIIETRVKELVQ-EMATADIH--------------------NHV----------------------------------DQDLRNKGQAKSRILVIK----CTPDTSFQYLPIMNCIFTAQKYNVPIDACVI--EKDSGFLQQACDITGGIYLKLQSPSGLLQYLLTAFL- T1FMV6/3-224 -SSDTNLLAIVLDCNPVWWGQLLSQ-NSEVSFTKCVDALIVFCNAHLMLDQANKLCLIIAHNKQNQYIYP--------KTKSEG---EVDMLE----DDNKPQSDGMYEPFADLTHVVKEQICDLVL-NDNSTELNSD----CMLTGAMSMALCYINRV----------------------------------TKEASPTETVSSRILVIK----GSKDSSAQYMNFMSLMFTAQKMNVVLDACIL--DNDSNLLKQGCDILDGVYLKLPQLSGFMEYLLCLYL- A0A1D8PPE3/19-276 GNDDPSLLTIILDLSMKGWYNI----KEMISIQDITKSLLVFLNGHLSLNNSNQVAFLVSSTMGSKFLYP--------DLTMVG---NPNVSEHSE------HFPDMYRSFKMVDQSVLQRLNEYIE-EIIKFETGNEKKGFNCLTGAISMALTYTNRMLTLDQSITTTTAAAMTASTLESTSNNNNTSGTSGSSSTSSSTSMKSRVLIVS----ANDDDDLRYIPLMNCIFAAQKMKVSIDVAKL-GHNNSSYLQQASDATKGVYLHIEDPKGIIQVLSTAFFI Q75B93/19-254 VEETPSLLTLVIDTNPKLWAEFDREVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVIAACSRGIKYLYP--------QADDKE---GSTK--KKKSEDRSIINRNMYRGFRNVDEAVVEELYRVFQQESKQLEDGVPQPFRSTLSGAMSAGLTYINRI-----------------------------------THETEGVSLKSRLLVITCGSSASKDEVFQYIPIMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTDGLIQYLSTAMF- R9XGG7/19-254 VEETPSLLTLVIDTSPKLWADFDKEVGKKGQLMQVLKSTIVFLNAHLSFNNSNQVSVIAACSRGIKYLYP--------QADEKE---GSTK--RKTSEDRSIINRNMYRGFRNVDEAVVEELDKVFQQESKELEDGVPQPFRSTLSGAMSAGLTYINRI-----------------------------------THENEGVSLKSRLLVITCGSSAAKDEVFQYIPIMNCIFSATKMKCPIDVVKVGGVKESTFLQQATDATNGNYLHVANTDGLIQYLSTAMF- H0GPY2/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- J5PBG8/19-253 TEESPSLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGIKYLYP--------ESTTTT---EASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVDSTQGLIQYLATAMF- A0A0L8VG24/1093-1327 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- A0A0L8RAZ0/19-256 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSSTTTSKAPRSDNRNRSDLKIINSDMYRRFRNVDETLVEEVYKLFELEKNQIEENSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLMVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVNSTQGLIQYLATAMF- A6ZWU5/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- C8ZJ81/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- C7GY43/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- G2WPN0/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- B3LLB1/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- H0H2D2/19-253 TEESPSLLTVIVEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAHSQGIKYLYP--------ESTTTT---EASKSEKKSRSDLKIINSDMYRRFRNVDEALVEEIYKLFEVEKNQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVDSTQGLIQYLATAMF- N1P251/19-253 TEESPSLLTVIIEIAPKLWTTFDEEGNEKGSIIKVLEALIVFLNAHLAFNSANKVAVIAAYSQGIKYLYP--------ESTSAL---KASESENKTRSDLKIINSDMYRRFRNVDETLVEEIYKLFELEKKQIEQNSQ---RSTLAGAMSAGLTYVNRI-----------------------------------SKESVTTSLKSRLLVLTCGSGSSKDEIFQYIPIMNCIFSATKMKCPIDVVKIGGSKESTFLQQTTDATNGVYLHVESTEGLIQYLATAMF- #=GC scorecons 245456996576745754934632325454554545556698596994564595666766554545879700000000444533000444334232224233444578647556644546564565517344483543000344646656446564976000000000000000000000000000000000004445344657996885533324559546796769777959596656796456343669579795596759699664554966779477560 #=GC scorecons_70 _____****_***__*__*__*_________________***_****__*__*_*_****______****____________________________________***_*__*______________*____*__________*_**_*__*_*_***____________________________________________***_**_________*___**********_*_***__***______***_****__***_*_***_____******_**_*_ #=GC scorecons_80 ______**__________*_____________________**_*_**_____*____*________****_____________________________________*__*_________________*____*______________________**_____________________________________________***_**_________*___**_*_**_**_*_*____**_________*__***__*_*_*_**______*__*_*_**___ #=GC scorecons_90 ______**__________*_____________________**_*_**_____*_____________*_*_______________________________________________________________________________________*_______________________________________________**_*__________*____*___*___*_*_*_____*_________*__*_*__*___*_**______*____*______ //