# STOCKHOLM 1.0
#=GF ID 3.40.50.410/FF/000101
#=GF DE General transcription factor IIH subunit, putative
#=GF AC 3.40.50.410/FF/000101
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 66.208
#=GS D0MQ89/10-219              AC D0MQ89
#=GS D0MQ89/10-219              OS Phytophthora infestans T30-4
#=GS D0MQ89/10-219              DE General transcription factor IIH subunit, putative
#=GS D0MQ89/10-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans; 
#=GS A0A0D1E4P9/31-217_250-341  AC A0A0D1E4P9
#=GS A0A0D1E4P9/31-217_250-341  OS Ustilago maydis 521
#=GS A0A0D1E4P9/31-217_250-341  DE Uncharacterized protein
#=GS A0A0D1E4P9/31-217_250-341  DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Ustilago; Ustilago maydis; 
#=GS E3K439/5-233               AC E3K439
#=GS E3K439/5-233               OS Puccinia graminis f. sp. tritici CRL 75-36-700-3
#=GS E3K439/5-233               DE Uncharacterized protein
#=GS E3K439/5-233               DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia graminis; 
#=GS W2NGB0/11-219              AC W2NGB0
#=GS W2NGB0/11-219              OS Phytophthora parasitica
#=GS W2NGB0/11-219              DE Uncharacterized protein
#=GS W2NGB0/11-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A0W8D7T8/11-219          AC A0A0W8D7T8
#=GS A0A0W8D7T8/11-219          OS Phytophthora nicotianae
#=GS A0A0W8D7T8/11-219          DE Lysosomal beta glucosidase
#=GS A0A0W8D7T8/11-219          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora nicotianae; 
#=GS A0A329ST02/15-222          AC A0A329ST02
#=GS A0A329ST02/15-222          OS Phytophthora cactorum
#=GS A0A329ST02/15-222          DE Uncharacterized protein
#=GS A0A329ST02/15-222          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora cactorum; 
#=GS H3GBC5/17-224              AC H3GBC5
#=GS H3GBC5/17-224              OS Phytophthora ramorum
#=GS H3GBC5/17-224              DE Uncharacterized protein
#=GS H3GBC5/17-224              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora ramorum; 
#=GS G4ZNE6/16-224              AC G4ZNE6
#=GS G4ZNE6/16-224              OS Phytophthora sojae strain P6497
#=GS G4ZNE6/16-224              DE Uncharacterized protein
#=GS G4ZNE6/16-224              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora sojae; 
#=GS W2ZEI6/11-219              AC W2ZEI6
#=GS W2ZEI6/11-219              OS Phytophthora parasitica P10297
#=GS W2ZEI6/11-219              DE Uncharacterized protein
#=GS W2ZEI6/11-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS A0A081ACK6/11-219          AC A0A081ACK6
#=GS A0A081ACK6/11-219          OS Phytophthora parasitica P1976
#=GS A0A081ACK6/11-219          DE Uncharacterized protein
#=GS A0A081ACK6/11-219          DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2QCR4/11-219              AC W2QCR4
#=GS W2QCR4/11-219              OS Phytophthora parasitica INRA-310
#=GS W2QCR4/11-219              DE Uncharacterized protein
#=GS W2QCR4/11-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2X494/11-219              AC W2X494
#=GS W2X494/11-219              OS Phytophthora parasitica CJ01A1
#=GS W2X494/11-219              DE Uncharacterized protein
#=GS W2X494/11-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS V9FBR5/11-219              AC V9FBR5
#=GS V9FBR5/11-219              OS Phytophthora parasitica P1569
#=GS V9FBR5/11-219              DE Uncharacterized protein
#=GS V9FBR5/11-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GS W2LAI6/11-219              AC W2LAI6
#=GS W2LAI6/11-219              OS Phytophthora parasitica
#=GS W2LAI6/11-219              DE Uncharacterized protein
#=GS W2LAI6/11-219              DR ORG; Eukaryota; Oomycetes; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora parasitica; 
#=GF SQ 14
D0MQ89/10-219                      TEANEGLLVLVIDTNPVHW--FTNGGS--------AADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSAMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRMQQLSDA-----------PLDPATPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILATEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
A0A0D1E4P9/31-217_250-341          -RTSPDFLVLVLDINPLAW--TRRSESLDKGKYKQVSSDVALEDALAAIMIFLNAHMAMQHENGLAIYAAAGTGTAQLLYSTASFSAKATGTGVVNSAASTSAQKPDANTYQHFKLVDDHLEQGIRATCKSMFDRAKKAQEAVHASADSEAVKHATLSRSINVGIVSALSQALCHLNRLGLSDATDAANTFKSRILILSVTQDASTQYIPMMNCIFAAQKKGITIDVCKLFGKDTVFLQQASYLTSGTYFRLADDEDQSKSDTASATDMRSSLVQTLLTTYL
E3K439/5-233                       TNDPADLLTVILDLNPLAWADLESGES--------QEETTSLVSVIESFLIFANSHLALRHENAIAVYGAS-LGSSELLYSSLQAKP-------ITTKSSQPSGSRDANTYQSFRILNDSIASGVK-------------QLATLTQSSSMTGKQP--------GIVKALAKALCHINRLA-RENENKKESLKARILILSVSSDAPGQYIPMMNCIFSAQKSTIPIDVCKISKENAVFLQQAAHLTEGIYYQIEK---------------PKAILQYLTMIFL
W2NGB0/11-219                      -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
A0A0W8D7T8/11-219                  -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDLSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
A0A329ST02/15-222                  --ANEGLLVLVIDTNPVHW--FTQGGS--------AADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSAMLYPDPEQND--------TTGSAEQAAKVNAGVMQRLQQLSDA-----------PLDPAKPNRTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILTTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
H3GBC5/17-224                      --ATEGLLVLVVDTSPVHW--FAQGGG--------AADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSAMLYPDPEQED--------TSGNAEQAAKVNAGVMQRLQQLSDA-----------PLDPAKPNRTA----------------------IAASISRALCFINRAI-----NEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILAAEHSSFMQQAAYLTGGIYYKPNG---------------PSGLLQYLISIYL
G4ZNE6/16-224                      -TANEGLLVLVIDTNPVHW--FAQGGS--------AADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSAMLYPDPEQDD--------TTGSAEQAARVNAGVMQRLQQLSDA-----------PLDPAKPNRTA----------------------IAASLSRALCFINRAI-----NEEPDLRPRILVVQKSPDVSEHYIAIMNGIFSAQKKSVAVDACILANEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
W2ZEI6/11-219                      -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
A0A081ACK6/11-219                  -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
W2QCR4/11-219                      -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
W2X494/11-219                      -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
V9FBR5/11-219                      -EANEGLLVLVIDTNPVHW--FALGGS--------TADRTGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSTEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
W2LAI6/11-219                      -EANEGLLVLVIDTNPVHW--FALGGS--------TADRAGLQQLISSTLVFVNSYLLLHRSNRIVIIAAH-AGKSTMLYPDPEQDD--------TTGSAEQAAKVNAGVLQRLQQLSDA-----------PLDPAKPNQTA----------------------IAASLSRSLCFINRAI-----NEEPDLRPRILVIQKSPDVSEHYIAIMNGIFSAQKKNVAVDACILSMEHSSFMQQAAYLTGGIYYKPND---------------HSGLLQYLISIYL
#=GC scorecons                     034445696776948964900433658000000003454559445646476959667575659465746940494636995444344000000006646544646469554945546594000100000003453543374900000010001000000000019545865599569954000006444466599965546495646995699599699964656959474365559699967995969764460000000000000004657695954679
#=GC scorecons_70                  ______*****_*_**__*_____*_*______________*___*_*_***_****_*___*_*_*_**___*_*_***_______________**_____*____*___*____*_*____________________*_*______________________*___**__**_***_______*____**_****___*_*_*_***_***_*******_*_**_*_*__*___*********_****____________________*_***_*__***
#=GC scorecons_80                  _______*__*_*_**__*_______*______________*_________*_*________*___*__*___*____**___________________________*___*______*____________________*_*______________________*___*___**__**_______________***______*____**__**_**_***_____*_*________*_***_***_*_**________________________*_*___**
#=GC scorecons_90                  _______*____*_**__*_______*______________*_________*_*________*______*___*____**___________________________*___*______*______________________*______________________*___*___**__**_______________***______*____**__**_**_***_____*_*________*_***__**_*_*_________________________*_*____*
//