# STOCKHOLM 1.0
#=GF ID 3.40.50.10810/FF/000065
#=GF DE SNF2 DNA repair protein, putative
#=GF AC 3.40.50.10810/FF/000065
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 84.416
#=GS Q384V0/149-399      AC Q384V0
#=GS Q384V0/149-399      OS Trypanosoma brucei brucei TREU927
#=GS Q384V0/149-399      DE SNF2 DNA repair protein, putative
#=GS Q384V0/149-399      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma brucei; Trypanosoma brucei brucei; 
#=GS Q384V0/149-399      DR GO; GO:0005634; GO:0005737; 
#=GS F4K856/180-404      AC F4K856
#=GS F4K856/180-404      OS Arabidopsis thaliana
#=GS F4K856/180-404      DE SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
#=GS F4K856/180-404      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A9SJZ9/47-270       AC A9SJZ9
#=GS A9SJZ9/47-270       OS Physcomitrella patens
#=GS A9SJZ9/47-270       DE SNF2 family DNA-dependent ATPase
#=GS A9SJZ9/47-270       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Bryopsida; Funariidae; Funariales; Funariaceae; Physcomitrella; Physcomitrella patens; 
#=GS A0A0P0X8K8/171-421  AC A0A0P0X8K8
#=GS A0A0P0X8K8/171-421  OS Oryza sativa Japonica Group
#=GS A0A0P0X8K8/171-421  DE Os07g0598300 protein
#=GS A0A0P0X8K8/171-421  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q0D4X8/163-413      AC Q0D4X8
#=GS Q0D4X8/163-413      OS Oryza sativa Japonica Group
#=GS Q0D4X8/163-413      DE Os07g0598300 protein
#=GS Q0D4X8/163-413      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q6ZJE3/34-284       AC Q6ZJE3
#=GS Q6ZJE3/34-284       OS Oryza sativa Japonica Group
#=GS Q6ZJE3/34-284       DE Putative DNA helicase
#=GS Q6ZJE3/34-284       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS Q4QH75/164-421      AC Q4QH75
#=GS Q4QH75/164-421      OS Leishmania major
#=GS Q4QH75/164-421      DE Putative SNF2/RAD54 related DNA helicase
#=GS Q4QH75/164-421      DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; 
#=GS A0A1G4IEU5/149-399  AC A0A1G4IEU5
#=GS A0A1G4IEU5/149-399  OS Trypanosoma equiperdum
#=GS A0A1G4IEU5/149-399  DE SNF2 DNA repair protein, putative
#=GS A0A1G4IEU5/149-399  DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Trypanosoma; Trypanozoon; Trypanosoma equiperdum; 
#=GS D7M0M5/179-414      AC D7M0M5
#=GS D7M0M5/179-414      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M0M5/179-414      DE SNF2 domain-containing protein
#=GS D7M0M5/179-414      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A1D6IIW1/186-466  AC A0A1D6IIW1
#=GS A0A1D6IIW1/186-466  OS Zea mays
#=GS A0A1D6IIW1/186-466  DE SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
#=GS A0A1D6IIW1/186-466  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS A0A1B6QFB4/198-472  AC A0A1B6QFB4
#=GS A0A1B6QFB4/198-472  OS Sorghum bicolor
#=GS A0A1B6QFB4/198-472  DE Uncharacterized protein
#=GS A0A1B6QFB4/198-472  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; 
#=GS I1QBX5/171-421      AC I1QBX5
#=GS I1QBX5/171-421      OS Oryza glaberrima
#=GS I1QBX5/171-421      DE Uncharacterized protein
#=GS I1QBX5/171-421      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS J3MMM9/157-407      AC J3MMM9
#=GS J3MMM9/157-407      OS Oryza brachyantha
#=GS J3MMM9/157-407      DE Uncharacterized protein
#=GS J3MMM9/157-407      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; 
#=GS A0A1D6IIV8/186-466  AC A0A1D6IIV8
#=GS A0A1D6IIV8/186-466  OS Zea mays
#=GS A0A1D6IIV8/186-466  DE SNF2 domain-containing protein / helicase domain-containing protein / HNH endonuclease domain-containing protein
#=GS A0A1D6IIV8/186-466  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; 
#=GS B8B845/171-421      AC B8B845
#=GS B8B845/171-421      OS Oryza sativa Indica Group
#=GS B8B845/171-421      DE Uncharacterized protein
#=GS B8B845/171-421      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GF SQ 15
Q384V0/149-399              VNEPSRVCR-EAISTVKENKAVHLPDLLPPKLMAALHRHQVDGICKALSFGGRAMFADEMGVGKTLQAIGTLAAL-NAFPALIVCPAALRHMWADELEKWLMDVLNMDDIRVITSSSDFLSR-SDEPKVVVTSFHMVSLLANHMKSRQWSSLVVDESHILHTSVDASCDAHY---TTLLCELGRRTKYCLLLTGTPSLSTPFDLFNQVDTVCPGLLGSSRFEFALRYCRIEFSPYFR------TFECTRSTELHSLLNATCMI--------------------------
F4K856/180-404              -----------LPEHYTEEKVEQLIETLPRKLVNALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAIAIAGCFISEGSILVVCPAVLRFTWAEELERWLPSCLP-SDVHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKS-DPPE---IKTVLDVAEKVKHIILLSGTPSVSRPFDIFHQINMLWPGLLGKDKYEFAKTYCEVGLVRGIQGKIF------------------------------------------------
A9SJZ9/47-270               -----------VPNHITDSEVEQLLLKLPPNLSKTLLPFQKEGVKFGLQRGGRCLFADEMGVGKTIQAIAMASCYKEEGSLLVICPASLRLVWADELERWLPYLSP-VDVHLVFGRKNNLTENMELPKVVVTSFNMLTRLRESMLSRKWGMVIVDEAHNIRCTSRKV-ECDEVSLTMAVLEVVQYVKRVVLLTGTPSLSRPFDIFNQINCLWPNLLGKNKYEFARNYCDRQWSPCGH----------------------------------------------------
A0A0P0X8K8/171-421          --------KFFAESCASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLP-KDIHLVFGHQDSLERLGACPKAVVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKH-EKNE---TQAVLELAPNVSRIVLLSGTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIR-------------------------
Q0D4X8/163-413              --------KFFAESCASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLP-KDIHLVFGHQDSLERLGACPKAVVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKH-EKNE---TQAVLELAPNVSRIVLLSGTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIR-------------------------
Q6ZJE3/34-284               --------KFFAESCASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLP-KDIHLVFGHQDSLERLGACPKAVVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKH-EKNE---TQAVLELAPNVSRIVLLSGTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIR-------------------------
Q4QH75/164-421              ------------SSAVPETR----LDRIPHLLRRTMKAHQVEGVRTALRWGGRILFADDMGVGKTMQALATVAAL-EAYPLLTVCPSALKLMWADLIEQYLHEQVSVEEIHPIHGANDALSS-DSQPKVVLVSYHMAAVLEKQLQSRSWKCLLCDESHLLHTNVSGA-DATY---TRVVVAIGKRTPYCLLLSGTPATDNPFDLYNQIDMLRPNLLGGSRFEFAMRYCQLTFSPYLQ------VGESTRRVEFLSLLRSCCMLRRLKEDVL-ELPRKSRVVMRVAHR--
A0A1G4IEU5/149-399          VNEPSRVCR-EAISTVKENKAVHLPDLLPPKLMAALHRHQVDGICKALSFGGRAMFADEMGVGKTLQAIGTLAAL-NAFPALIVCPAALRHMWADELEKWLMDVLNMDDIRVITSSSDFLSR-SDEPKVVVTSFHMVSLLANHMKSRQWSSLVVDESHILHTSVDASCDAHY---TTLLCELGRRTKYCLLLTGTPSLSTPFDLFNQVDTVCPGLLGSSRFEFALRYCRIEFSPYFR------TFECTRSTELHSLLNATCMI--------------------------
D7M0M5/179-414              ----------CIPEHYTEEKVEKLIETLPRKLVSALLPFQLDGLRFGLRRGGRCFIADEMGLGKTLQAIAIAGCFISEGSILVVCPAVLRFSWAEELERWLPFCLP-SDIHLVFGHQDNPAYLPRWPKVVVISYKMLQHLRTTMLEREWALLIVDESHHLRCSKKKS-DPPE---IKTVLNVAEKVKHIVLLSGTPSISRPFDIFHQINILWPGLLGKEKYEFAKTYCEVGLVRGMQGKIFQDFSKGTRLL--------------------------------------
A0A1D6IIW1/186-466          I---QNIPRYHVQKWASDEEVHELLKKLPQQIKDALLPFQLEGVMFGLRRRGRCLIADEMGLGKTLQAIAIACCFKDEGSILIVCPAVLRYSWAEELERWDPSFMP-KDIHIVFGRQDSLEHLNATPRAVIISYQMLSRLRESMVNRTWALMIVDESHNIRCTKKLE-EKYE---TKAVLHLASKTERIILLSGTPSFSRPFDIYHQINMLWPHMLGTDKFDYAKKYCLLHVARSYQGKMFKDFSKGTRLTELNVLLSQTVMIRRLKEHLLNELPPKRRQIIRLKLKAP
A0A1B6QFB4/198-472          ---------YPGPKWASDEEVDELLKKLPQQIKDALLPFQLEGVMFGLRRRGRCLIADEMGLGKTLQAIAIACCFKDEGSILIVCPAVLRYSWVEELERWDPSFMP-KDIHIVFGRQDSLEHLNATPRAVITSYQMLSRLRESMVNRTWALMIVDESHNIRCTTKQE-EKYE---TKAVLHLASKTDRIILLSGTPSLSRPFDIYHQINMLWPRMLGRDKFDYAKKYCLLHAARSYQGKIFKDFSKGTRLTELNVLLSQTVMIRRLKEHLLNELPPKRRQIIRLKLKAP
I1QBX5/171-421              --------KFFAESCASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLP-KDIHLVFGHQDSLERLGACPKAVVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKH-EKNE---TQAVLELAPNVSRIVLLSGTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIR-------------------------
J3MMM9/157-407              -------PKFFAESCASDKEVDELLTKLPQHLRDALLPFQLEGVRFGLQRNGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLP-KDIHLVFGHQGSLERLGACPRAVVISYQMLSRLRTSMMNRRWALMIVDESHNIRCTQKKH-EKNE---TQAVLELAPNISRIVLLSGTPSLSRPFDIYHQINILWPHLLGSDKFDFANKYCLPHTVRGFKGRTYRDFSKGVRLTELNVLLSQTLMI--------------------------
A0A1D6IIV8/186-466          I---QNIPRYHVQKWASDEEVHELLKKLPQQIKDALLPFQLEGVMFGLRRRGRCLIADEMGLGKTLQAIAIACCFKDEGSILIVCPAVLRYSWAEELERWDPSFMP-KDIHIVFGRQDSLEHLNATPRAVIISYQMLSRLRESMVNRTWALMIVDESHNIRCTKKLE-EKYE---TKAVLHLASKTERIILLSGTPSFSRPFDIYHQINMLWPHMLGTDKFDYAKKYCLLHVARSYQGKMFKDFSKGTRLTELNVLLSQTVMIRRLKEHLLNELPPKRRQIIRLKLKAP
B8B845/171-421              --------KFFAESCASDKEVDGLLMKLPQHLRDALLPFQLEGVKFGLRRHGRCLIADEMGLGKTLQAIAIACCYKDEGPVLIVCPAVLRYTWAEELERWDPSFLP-KDIHLVFGHQDSLERLGACPKAVVISYQMLSRLRKSMMNRRWALMIIDESHNIRCTKKKH-EKNE---TQAVLELAPNVSRIVLLSGTPSLSRPFDIYHQINMLWPHLLGSNKFDFANKYCLLHTVQGCNGRTYQDFSKGARLTELNVLLSQTLMIR-------------------------
#=GC scorecons              0000000021143534474553375348954734785569579645695549956599899699979987664653564659689975985498778977454456048775757457474433429769659759654954483593955676998946665454307435000745755653454555996999757599967697657694799447778935993543444343222123343463454335532425420000000000000000000000000
#=GC scorecons_70           _________________*_____*___**__*__**__**_***__**___**_*_**************___________******_**__********________***_*_*__*_*______**_**_**_**__*___*__*_*__*******_**_______*______*__*__*________*******_*_*****_***_*_*_***__*****__**_____________________________________________________________
#=GC scorecons_80           ___________________________**__*__**___*_**____*___**___*****_********___________*_****_**__**_***_*________***_*_*__*_*______**_*__**_*___*___*__*_*_____****_________________*__*___________**_****_*_***_*_**__*_*_***__**_**__**_____________________________________________________________
#=GC scorecons_90           ____________________________*______*___*__*____*___**___*****_***_**_____________*_***__**__**___*__________*_________________*__*__*__*___*___*__*_*_____**_*________________________________**_***____***___*_____*__**______*__**_____________________________________________________________
//