# STOCKHOLM 1.0 #=GF ID 3.40.50.10130/FF/000009 #=GF DE UV endonuclease #=GF AC 3.40.50.10130/FF/000009 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 84.035 #=GS P06777/820-977 AC P06777 #=GS P06777/820-977 OS Saccharomyces cerevisiae S288C #=GS P06777/820-977 DE DNA repair protein RAD1 #=GS P06777/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS P06777/820-977 DR GO; GO:0000110; GO:0000710; GO:0000735; GO:0000736; GO:0003697; GO:0005515; GO:0005634; GO:0006277; GO:0006296; GO:0006312; #=GS D3KH96/644-792 AC D3KH96 #=GS D3KH96/644-792 OS Giardia lamblia ATCC 50803 #=GS D3KH96/644-792 DE Uncharacterized protein #=GS D3KH96/644-792 DR ORG; Eukaryota; Diplomonadida; Hexamitidae; Giardiinae; Giardia; Giardia intestinalis; #=GS A0DVC0/696-844 AC A0DVC0 #=GS A0DVC0/696-844 OS Paramecium tetraurelia #=GS A0DVC0/696-844 DE Uncharacterized protein #=GS A0DVC0/696-844 DR ORG; Eukaryota; Ciliophora; Intramacronucleata; Oligohymenophorea; Peniculida; Parameciidae; Paramecium; Paramecium tetraurelia; #=GS B7P865/617-754 AC B7P865 #=GS B7P865/617-754 OS Ixodes scapularis #=GS B7P865/617-754 DE DNA repair endonuclease xp-f / mei-9 / rad1, putative #=GS B7P865/617-754 DR ORG; Eukaryota; Metazoa; Arthropoda; Chelicerata; Arachnida; Acari; Parasitiformes; Ixodida; Ixodoidea; Ixodidae; Ixodinae; Ixodes; Ixodes scapularis; #=GS Q4QAH9/756-816_853-986 AC Q4QAH9 #=GS Q4QAH9/756-816_853-986 OS Leishmania major #=GS Q4QAH9/756-816_853-986 DE Uncharacterized protein #=GS Q4QAH9/756-816_853-986 DR ORG; Eukaryota; Kinetoplastida; Trypanosomatidae; Leishmaniinae; Leishmania; Leishmania; Leishmania major species complex; Leishmania major; #=GS Q752W7/764-924 AC Q752W7 #=GS Q752W7/764-924 OS Eremothecium gossypii ATCC 10895 #=GS Q752W7/764-924 DE AFR456Cp #=GS Q752W7/764-924 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; #=GS R9XB48/764-924 AC R9XB48 #=GS R9XB48/764-924 OS Saccharomycetaceae sp. 'Ashbya aceri' #=GS R9XB48/764-924 DE AaceriAFR456Cp #=GS R9XB48/764-924 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomycetaceae sp. 'Ashbya aceri'; #=GS H0GQA7/820-977 AC H0GQA7 #=GS H0GQA7/820-977 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GQA7/820-977 DE Rad1p #=GS H0GQA7/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS A0A0L8VG55/820-977 AC A0A0L8VG55 #=GS A0A0L8VG55/820-977 OS Saccharomyces sp. 'boulardii' #=GS A0A0L8VG55/820-977 DE RAD1p Single-stranded DNA endonuclease (With Rad10p) #=GS A0A0L8VG55/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; #=GS A0A0L8RA16/829-986 AC A0A0L8RA16 #=GS A0A0L8RA16/829-986 OS Saccharomyces eubayanus #=GS A0A0L8RA16/829-986 DE RAD1-like protein #=GS A0A0L8RA16/829-986 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; #=GS N1NW58/820-977 AC N1NW58 #=GS N1NW58/820-977 OS Saccharomyces cerevisiae CEN.PK113-7D #=GS N1NW58/820-977 DE Rad1p #=GS N1NW58/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A6ZWM4/820-977 AC A6ZWM4 #=GS A6ZWM4/820-977 OS Saccharomyces cerevisiae YJM789 #=GS A6ZWM4/820-977 DE UV endonuclease #=GS A6ZWM4/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS C8ZJ06/820-977 AC C8ZJ06 #=GS C8ZJ06/820-977 OS Saccharomyces cerevisiae EC1118 #=GS C8ZJ06/820-977 DE Rad1p #=GS C8ZJ06/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS G2WPF6/820-977 AC G2WPF6 #=GS G2WPF6/820-977 OS Saccharomyces cerevisiae Kyokai no. 7 #=GS G2WPF6/820-977 DE K7_Rad1p #=GS G2WPF6/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B3LL41/820-977 AC B3LL41 #=GS B3LL41/820-977 OS Saccharomyces cerevisiae RM11-1a #=GS B3LL41/820-977 DE UV endonuclease #=GS B3LL41/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B5VTE0/820-977 AC B5VTE0 #=GS B5VTE0/820-977 OS Saccharomyces cerevisiae AWRI1631 #=GS B5VTE0/820-977 DE YPL022Wp-like protein #=GS B5VTE0/820-977 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GF SQ 16 P06777/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- D3KH96/644-792 --LLYIDNRELRS-----------VVPVELFV-LSKGLRLIVRQLTLGDYILS-------SMTAVERKSEQ--DLISSLRNNRLEDQLERL-NAQFPTFFLMCSIPSERSHDMIQIDTQS---NQS---TTIAASKPLG-----------------LTARLFKLLRTYKSMRVLWSTDT-TFAPLLMRLKMTCMDRG----- A0DVC0/696-844 --RILVDYREFRC-----------DVPPKLY---FHGIQLTPVMLKVGDIVLS-------NNCAIERKSVETGDLIESLNQNRLDQQLQKM--NSFDHPFLLIEYSDNIPFCLGSLSRQSQ--NYS--------------------------SNTRVMVRLLELITKYSKIQILWSNNSDDTIKIISKLKQTLARNSPDITI B7P865/617-754 --KVIVDLREFRS-----------DLPSLIH---RRGISVQPVTIEVGDYILT-------PDICVERKSLN--DLIGSLNSGRLYNQAQSM-CRYYKRPVLLIEFSQNQPFCLQDFLLHLPGVNLK--NQALLTRKFTNLVE----------MFAASEEELASAMGNAAQAKLLWE-------------------------- Q4QAH9/756-816_853-986 RWQWLVDFRERSSAHRGGGGSGRRQHEGMLDVFRKQHVPCTSMMLPAGDFMLSVELSNEEASLVVERKTAA--DLDASVKGARYTEQRRLLAASPFRLVVWLIEGVNVAGGSGSGFSRHGQR-HYQGGDGTESDTQPGSRSPSPAPSSRAESARQRVDSACASLGLHGKGWLVVRTRNTTESVQFLKLLATHVARQLA---- Q752W7/764-924 D-IVIVDIREFRA-----------PLPGLLY---RYGVKVLPCMLTVGDYIIT-------PKICIERKSIA--DLIGSFKNGRLQKQCREM-AKYYELPTLLLEFDDSESFSLEPFGER----GYT--TTTSSTIHPISNKL----------MQEEIQLELAKLVLRFPNLKIIWSSSPLQTVNIILDLKSGREQPNPSVAV R9XB48/764-924 D-IVIVDIREFRA-----------PLPGLLY---RYGVKVLPCMLTVGDYIIT-------PKICIERKSIA--DLIGSFKNGRLQKQCRAM-AKYYDLPTLLLEFDDNESFSLEPFGER----GYT--TTTSSTIHPISNKL----------MQEEIQLELAKLVLRFPNLKIIWSSSPLQTVNIILDLKSGREQPNPSVAV H0GQA7/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- A0A0L8VG55/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIA--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- A0A0L8RA16/829-986 D-VVIVDTREFNA-----------SLPGLLF---RYGIRVLPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLATQCKKM-LKYYKYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- N1NW58/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- A6ZWM4/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- C8ZJ06/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- G2WPF6/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- B3LL41/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- B5VTE0/820-977 D-VVIVDTREFNA-----------SLPGLLY---RYGIRVIPCMLTVGDYVIT-------PDICLERKSIS--DLIGSLQNNRLANQCKKM-LKYYAYPTLLIEFDEGQSFSLEPFSERR---NYK--NKDISTVHPISSKL----------SQDEIQLKLAKLVLRFPTLKIIWSSSPLQTVNIILELKLGREQPDP---- #=GC scorecons 2035589399545000000000003575475000547645464675699666600000005455599974400996596455973493547024473354786744444555544654520006640033334434534222000000000033335444665744444345667634423453453365333343240000 #=GC scorecons_70 _____**_**________________*__*______**______*_******_____________****____***_**___**__*___*____*____****___________*_______*____________________________________*__*________*_*_____________*_____________ #=GC scorecons_80 _____**_**___________________*______________*__**________________****____**__*____**__*___*____*_____*_*___________________________________________________________*__________*___________________________ #=GC scorecons_90 _____**_**_____________________________________**________________***_____**__*____*___*___________________________________________________________________________________________________________________ //