# STOCKHOLM 1.0 #=GF ID 3.40.220.10/FF/000017 #=GF DE ORF1a polyprotein #=GF AC 3.40.220.10/FF/000017 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 19.603 #=GS 5holA00/1-171 AC K9N7C7 #=GS 5holA00/1-171 OS Betacoronavirus England 1 #=GS 5holA00/1-171 DE Replicase polyprotein 1ab #=GS 5holA00/1-171 DR CATH; 5hol; A:0-166; #=GS 5holA00/1-171 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS 5holA00/1-171 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS 5hihA00/1-171 AC K9N638 #=GS 5hihA00/1-171 OS Betacoronavirus England 1 #=GS 5hihA00/1-171 DE Replicase polyprotein 1a #=GS 5hihA00/1-171 DR CATH; 5hih; A:0-166; #=GS 5hihA00/1-171 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS 5hihA00/1-171 DR EC; 3.4.19.12; 3.4.22.69; #=GS 5dusA00/1-168 AC K9N638 #=GS 5dusA00/1-168 OS Betacoronavirus England 1 #=GS 5dusA00/1-168 DE Replicase polyprotein 1a #=GS 5dusA00/1-168 DR CATH; 5dus; A:0-164; #=GS 5dusA00/1-168 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS 5dusA00/1-168 DR EC; 3.4.19.12; 3.4.22.69; #=GS A0A1W6ASU8/1104-1269 AC A0A1W6ASU8 #=GS A0A1W6ASU8/1104-1269 OS Bat coronavirus #=GS A0A1W6ASU8/1104-1269 DE ORF1a protein #=GS A0A1W6ASU8/1104-1269 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Coronavirinae; Bat coronavirus; #=GS K9N7C7/1107-1273 AC K9N7C7 #=GS K9N7C7/1107-1273 OS Betacoronavirus England 1 #=GS K9N7C7/1107-1273 DE Replicase polyprotein 1ab #=GS K9N7C7/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS K9N7C7/1107-1273 DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; #=GS M1RUQ1/1107-1273 AC M1RUQ1 #=GS M1RUQ1/1107-1273 OS Human betacoronavirus 2c England-Qatar/2012 #=GS M1RUQ1/1107-1273 DE ORF1a #=GS M1RUQ1/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS M1RUQ1/1107-1273 DR EC; 3.4.19.12; 3.4.22.69; #=GS K9N638/1107-1273 AC K9N638 #=GS K9N638/1107-1273 OS Betacoronavirus England 1 #=GS K9N638/1107-1273 DE Replicase polyprotein 1a #=GS K9N638/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS K9N638/1107-1273 DR EC; 3.4.19.12; 3.4.22.69; #=GS A0A0U2GPI9/1107-1273 AC A0A0U2GPI9 #=GS A0A0U2GPI9/1107-1273 OS Middle East respiratory syndrome-related coronavirus #=GS A0A0U2GPI9/1107-1273 DE Polyprotein ORF1ab #=GS A0A0U2GPI9/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS M4STU1/1107-1273 AC M4STU1 #=GS M4STU1/1107-1273 OS Human betacoronavirus 2c Jordan-N3/2012 #=GS M4STU1/1107-1273 DE ORF1ab protein #=GS M4STU1/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS K0BWD0/1107-1273 AC K0BWD0 #=GS K0BWD0/1107-1273 OS Human betacoronavirus 2c EMC/2012 #=GS K0BWD0/1107-1273 DE ORF1ab #=GS K0BWD0/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS K4LC41/1107-1273 AC K4LC41 #=GS K4LC41/1107-1273 OS Human betacoronavirus 2c EMC/2012 #=GS K4LC41/1107-1273 DE ORF1a #=GS K4LC41/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS V9TU12/1107-1273 AC V9TU12 #=GS V9TU12/1107-1273 OS Middle East respiratory syndrome-related coronavirus #=GS V9TU12/1107-1273 DE Orf1a #=GS V9TU12/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS V9TU05/1107-1273 AC V9TU05 #=GS V9TU05/1107-1273 OS Middle East respiratory syndrome-related coronavirus #=GS V9TU05/1107-1273 DE Orf1a #=GS V9TU05/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS W6A941/1107-1273 AC W6A941 #=GS W6A941/1107-1273 OS Middle East respiratory syndrome-related coronavirus #=GS W6A941/1107-1273 DE ORF1a #=GS W6A941/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS S5PWH2/1113-1279 AC S5PWH2 #=GS S5PWH2/1113-1279 OS Coronavirus Neoromicia/PML-PHE1/RSA/2011 #=GS S5PWH2/1113-1279 DE ORF1ab polyprotein #=GS S5PWH2/1113-1279 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS A0A075Q443/1113-1279 AC A0A075Q443 #=GS A0A075Q443/1113-1279 OS Coronavirus Neoromicia/PML-PHE1/RSA/2011 #=GS A0A075Q443/1113-1279 DE ORF1a polyprotein #=GS A0A075Q443/1113-1279 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS W6A0I8/473-639 AC W6A0I8 #=GS W6A0I8/473-639 OS Middle East respiratory syndrome-related coronavirus #=GS W6A0I8/473-639 DE ORF1a #=GS W6A0I8/473-639 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS W6A040/473-639 AC W6A040 #=GS W6A040/473-639 OS Middle East respiratory syndrome-related coronavirus #=GS W6A040/473-639 DE ORF1a #=GS W6A040/473-639 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GS A0A2D0YGC2/1107-1273 AC A0A2D0YGC2 #=GS A0A2D0YGC2/1107-1273 OS Middle East respiratory syndrome-related coronavirus #=GS A0A2D0YGC2/1107-1273 DE 1AB polyprotein #=GS A0A2D0YGC2/1107-1273 DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; #=GF SQ 19 5holA00/1-171 GSHMDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVD 5hihA00/1-171 GSHMDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTIVD 5dusA00/1-168 GSHM-PLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- A0A1W6ASU8/1104-1269 ---VDPLFNFEHKVITDCVTMVLGDAIQVAKCYDEAVLVNAANTYLKHGGGIAGAINAASNGAVQQESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLGKCYKAMNAYPLVVTPLVSAGIFGVQPSVSFDYLIREVKTRVLVVVNSQDIYKSLTT-- K9N7C7/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- M1RUQ1/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- K9N638/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- A0A0U2GPI9/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- M4STU1/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- K0BWD0/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- K4LC41/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- V9TU12/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- V9TU05/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- W6A941/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- S5PWH2/1113-1279 --NVDPLSNFEHKVITDCVTIVLGDAIQVAKCYEQSVLVNAANTHLKHGGGIAAAINAATKGAVQQESDEYILTRGPLQVGESALLQGHSLAKNILHVVGPDARAKQDVSLLSKCYRAMNAYPLVVTPLVSAGIFGVKPSVSFDYLIREVETRVLVVVNSHDVYKSLTT-- A0A075Q443/1113-1279 --NVDPLSNFEHKVITDCVTIVLGDAIQVAKCYEQSVLVNAANTHLKHGGGIAAAINAATKGAVQQESDEYILTRGPLQVGESALLQGHSLAKNILHVVGPDARAKQDVSLLSKCYRAMNAYPLVVTPLVSAGIFGVKPSVSFDYLIREVETRVLVVVNSHDVYKSLTT-- W6A0I8/473-639 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- W6A040/473-639 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDEYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- A0A2D0YGC2/1107-1273 --NVDPLSNFEHKVITECVTIVLGDAIQVAKCYGESVLVNAANTHLKHGGGIAGAINAASKGAVQKESDGYILAKGPLQVGDSVLLQGHSLAKNILHVVGPDARAKQDVSLLSKCYKAMNAYPLVVTPLVSAGIFGVKPAVSFDYLIREAKTRVLVVVNSQDVYKSLTI-- #=GC scorecons 005779979999999979997999999999999677999999998999999996999996799996999899977999999796999999999999999999999999999979997999999999999999999997969999999996699999999979899999600 #=GC scorecons_70 ___******************************_*********************************************************************************************************_*********_******************___ #=GC scorecons_80 ____************_****************__******************_*****_*****_*******_*********_*******************************************************_*********__*****************___ #=GC scorecons_90 _____**_********_***_************___*****************_*****__****_*******__******_*_****************************_***_********************_*_*********__*********_*******___ //