# STOCKHOLM 1.0
#=GF ID 3.30.70.3540/FF/000002
#=GF DE ORF1a polyprotein
#=GF AC 3.30.70.3540/FF/000002
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 8.919
#=GS K9N7C7/4029-4125      AC K9N7C7
#=GS K9N7C7/4029-4125      OS Betacoronavirus England 1
#=GS K9N7C7/4029-4125      DE Replicase polyprotein 1ab
#=GS K9N7C7/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K9N7C7/4029-4125      DR EC; 2.7.7.48; 3.4.19.12; 3.4.22.69; 3.6.4.12; 3.6.4.13; 
#=GS K9N638/4029-4125      AC K9N638
#=GS K9N638/4029-4125      OS Betacoronavirus England 1
#=GS K9N638/4029-4125      DE Replicase polyprotein 1a
#=GS K9N638/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K9N638/4029-4125      DR EC; 3.4.19.12; 3.4.22.69; 
#=GS M1RUQ1/4029-4125      AC M1RUQ1
#=GS M1RUQ1/4029-4125      OS Human betacoronavirus 2c England-Qatar/2012
#=GS M1RUQ1/4029-4125      DE ORF1a
#=GS M1RUQ1/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS M1RUQ1/4029-4125      DR EC; 3.4.19.12; 3.4.22.69; 
#=GS A0A0U2GPI9/4029-4125  AC A0A0U2GPI9
#=GS A0A0U2GPI9/4029-4125  OS Middle East respiratory syndrome-related coronavirus
#=GS A0A0U2GPI9/4029-4125  DE Polyprotein ORF1ab
#=GS A0A0U2GPI9/4029-4125  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS M4STU1/4029-4125      AC M4STU1
#=GS M4STU1/4029-4125      OS Human betacoronavirus 2c Jordan-N3/2012
#=GS M4STU1/4029-4125      DE ORF1ab protein
#=GS M4STU1/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K0BWD0/4029-4125      AC K0BWD0
#=GS K0BWD0/4029-4125      OS Human betacoronavirus 2c EMC/2012
#=GS K0BWD0/4029-4125      DE ORF1ab
#=GS K0BWD0/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS K4LC41/4029-4125      AC K4LC41
#=GS K4LC41/4029-4125      OS Human betacoronavirus 2c EMC/2012
#=GS K4LC41/4029-4125      DE ORF1a
#=GS K4LC41/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS V9TU12/4029-4125      AC V9TU12
#=GS V9TU12/4029-4125      OS Middle East respiratory syndrome-related coronavirus
#=GS V9TU12/4029-4125      DE Orf1a
#=GS V9TU12/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS V9TU05/4029-4125      AC V9TU05
#=GS V9TU05/4029-4125      OS Middle East respiratory syndrome-related coronavirus
#=GS V9TU05/4029-4125      DE Orf1a
#=GS V9TU05/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A941/4029-4125      AC W6A941
#=GS W6A941/4029-4125      OS Middle East respiratory syndrome-related coronavirus
#=GS W6A941/4029-4125      DE ORF1a
#=GS W6A941/4029-4125      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS S5PWH2/4032-4128      AC S5PWH2
#=GS S5PWH2/4032-4128      OS Coronavirus Neoromicia/PML-PHE1/RSA/2011
#=GS S5PWH2/4032-4128      DE ORF1ab polyprotein
#=GS S5PWH2/4032-4128      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A0N1/1219-1315      AC W6A0N1
#=GS W6A0N1/1219-1315      OS Middle East respiratory syndrome-related coronavirus
#=GS W6A0N1/1219-1315      DE ORF1ab
#=GS W6A0N1/1219-1315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS A0A075Q443/4032-4128  AC A0A075Q443
#=GS A0A075Q443/4032-4128  OS Coronavirus Neoromicia/PML-PHE1/RSA/2011
#=GS A0A075Q443/4032-4128  DE ORF1a polyprotein
#=GS A0A075Q443/4032-4128  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A938/66-162         AC W6A938
#=GS W6A938/66-162         OS Middle East respiratory syndrome-related coronavirus
#=GS W6A938/66-162         DE ORF1ab
#=GS W6A938/66-162         DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A0N5/66-162         AC W6A0N5
#=GS W6A0N5/66-162         OS Middle East respiratory syndrome-related coronavirus
#=GS W6A0N5/66-162         DE ORF1a
#=GS W6A0N5/66-162         DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS T2B9L7/36-131         AC T2B9L7
#=GS T2B9L7/36-131         OS Middle East respiratory syndrome-related coronavirus
#=GS T2B9L7/36-131         DE ORF1ab
#=GS T2B9L7/36-131         DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W5ZZQ3/810-906        AC W5ZZQ3
#=GS W5ZZQ3/810-906        OS Middle East respiratory syndrome-related coronavirus
#=GS W5ZZQ3/810-906        DE ORF1ab
#=GS W5ZZQ3/810-906        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS T2BBD9/2616-2712      AC T2BBD9
#=GS T2BBD9/2616-2712      OS Middle East respiratory syndrome-related coronavirus
#=GS T2BBD9/2616-2712      DE ORF1a
#=GS T2BBD9/2616-2712      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS W6A935/810-906        AC W6A935
#=GS W6A935/810-906        OS Middle East respiratory syndrome-related coronavirus
#=GS W6A935/810-906        DE ORF1a
#=GS W6A935/810-906        DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GS A0A2D0YGC2/4029-4125  AC A0A2D0YGC2
#=GS A0A2D0YGC2/4029-4125  OS Middle East respiratory syndrome-related coronavirus
#=GS A0A2D0YGC2/4029-4125  DE 1AB polyprotein
#=GS A0A2D0YGC2/4029-4125  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Merbecovirus; Middle East respiratory syndrome-related coronavirus; 
#=GF SQ 20
K9N7C7/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
K9N638/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
M1RUQ1/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
A0A0U2GPI9/4029-4125          NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
M4STU1/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
K0BWD0/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
K4LC41/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
V9TU12/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
V9TU05/4029-4125              NDVLNGIISNARXGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
W6A941/4029-4125              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
S5PWH2/4032-4128              NDVLNGIISNARNGCIPLSVVPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVETNESLTWPLVLECTRAATSAVK
W6A0N1/1219-1315              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLGLECTRASTSAVK
A0A075Q443/4032-4128          NDVLNGIISNARNGCIPLSVVPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVETNESLTWPLVLECTRAATSAVK
W6A938/66-162                 NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
W6A0N5/66-162                 NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
T2B9L7/36-131                 -DVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
W5ZZQ3/810-906                NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
T2BBD9/2616-2712              NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
W6A935/810-906                NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
A0A2D0YGC2/4029-4125          NDVLNGIISNARNGCIPLSVIPLCASNKLRVVIPDFTVWNQVVTYPSLNYAGALWDITVINNVDNEIVKSSDVVDSNENLTWPLVLECTRASTSAVK
#=GC scorecons                7999999999997999999979999999999999999999999999999999999999999999999999999976996999997999999699999
#=GC scorecons_70             *************************************************************************************************
#=GC scorecons_80             ***************************************************************************_**_************_*****
#=GC scorecons_90             _***********_*******_*****************************************************__**_*****_******_*****
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