# STOCKHOLM 1.0
#=GF ID 3.30.50.10/FF/000074
#=GF DE Nuclear receptor 1
#=GF AC 3.30.50.10/FF/000074
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 59.054
#=GS W4YSS4/23-128  AC W4YSS4
#=GS W4YSS4/23-128  OS Strongylocentrotus purpuratus
#=GS W4YSS4/23-128  DE Uncharacterized protein
#=GS W4YSS4/23-128  DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS H2XS16/41-143  AC H2XS16
#=GS H2XS16/41-143  OS Ciona intestinalis
#=GS H2XS16/41-143  DE Uncharacterized protein
#=GS H2XS16/41-143  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS H9GHP4/1-91    AC H9GHP4
#=GS H9GHP4/1-91    OS Anolis carolinensis
#=GS H9GHP4/1-91    DE Uncharacterized protein
#=GS H9GHP4/1-91    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; 
#=GS C3YYX7/44-150  AC C3YYX7
#=GS C3YYX7/44-150  OS Branchiostoma floridae
#=GS C3YYX7/44-150  DE Uncharacterized protein
#=GS C3YYX7/44-150  DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS H2XNI0/41-143  AC H2XNI0
#=GS H2XNI0/41-143  OS Ciona intestinalis
#=GS H2XNI0/41-143  DE Uncharacterized protein
#=GS H2XNI0/41-143  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS O77154/41-143  AC O77154
#=GS O77154/41-143  OS Ciona intestinalis
#=GS O77154/41-143  DE Nuclear receptor 1
#=GS O77154/41-143  DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS A7L5U9/44-150  AC A7L5U9
#=GS A7L5U9/44-150  OS Branchiostoma floridae
#=GS A7L5U9/44-150  DE Thyroid hormone receptor
#=GS A7L5U9/44-150  DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GF SQ 7
W4YSS4/23-128          --MDLSNGPEPCVVCGDAATGYHYRCMTCEGCKGFFRRTIQKKL--SYYCKWNEECIIDKTTRNQCQQCRYKKCLNVGMAPDLVLN---ESQRKAKRALIQENREKRGREEM-L
H2XS16/41-143          N--------EECVVCGDKATGYHYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLN---EDKRIAKRKLIERNRQLRRHKDISH
H9GHP4/1-91            ----------LCVVCGDKATGYHYRCITCEGCKGFFRRTIQKNLHPTYSCKYEGKCVIDKVTRNQCQECRFKKCIYVGMATDFYFGGRAESSRDLETRLLD-------------
C3YYX7/44-150          SYMD-QNTPEPCVVCGDKATGYHYRCMTCEGCKGFFRRTVQKDL--KYSCKYAGDCVVDKTTRNQCQECRFKKCVRVGMATDLVLD---EQKRVAKRKLIEENRERRRSEEI-R
H2XNI0/41-143          N--------EECVVCGDKATGYHYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLN---EDKRIAKRKLIERNRQLRRHKDISH
O77154/41-143          N--------EECVVCGDKATGYHYRCITCEGCKGFFRRTVQKDLQKTYQCKQRGKCQVNKVSRNQCQMCRYEKCIATGMATDLVLN---EDKRIAKRKLIERNRQLRRHKDISH
A7L5U9/44-150          SYMD-QNTPEPCVVCGDKATGYHYRCMTCEGCKGFFRRTVQKDL--KYSCKYAGDCVVDKTTRNQCQECRFKKCVRVGMATDLVLD---EQKRVAKRKLIEENRERRRSEEI-R
#=GC scorecons         201100101539999996999999996999999999999699591149499437594669569999939976996359997975750009459366659763553253234402
#=GC scorecons_70      ___________*******************************_*___*_**__*_*_***__*****_***_**___******_*____*__*_***_**______________
#=GC scorecons_80      ___________******_********_************_**_*___*_**__*_*___*__*****_***_**___*****_______*__*_____*_______________
#=GC scorecons_90      ___________******_********_************_**_*___*_**____*___*__*****_**__**___***_*_______*__*_____*_______________
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