# STOCKHOLM 1.0
#=GF ID 3.30.50.10/FF/000058
#=GF DE Nuclear Hormone Receptor family
#=GF AC 3.30.50.10/FF/000058
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 67.809
#=GS Q9N418/7-108       AC Q9N418
#=GS Q9N418/7-108       OS Caenorhabditis elegans
#=GS Q9N418/7-108       DE Nuclear Hormone Receptor family
#=GS Q9N418/7-108       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q7PXD3/21-117      AC Q7PXD3
#=GS Q7PXD3/21-117      OS Anopheles gambiae
#=GS Q7PXD3/21-117      DE AGAP001348-PA
#=GS Q7PXD3/21-117      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Nematocera; Culicomorpha; Culicoidea; Culicidae; Anophelinae; Anopheles; Cellia; Anopheles gambiae; 
#=GS E9HQ29/2-106       AC E9HQ29
#=GS E9HQ29/2-106       OS Daphnia pulex
#=GS E9HQ29/2-106       DE Uncharacterized protein
#=GS E9HQ29/2-106       DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS D6WNH4/4-102       AC D6WNH4
#=GS D6WNH4/4-102       OS Tribolium castaneum
#=GS D6WNH4/4-102       DE Protein tailless-like Protein
#=GS D6WNH4/4-102       DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A7S012/1-105       AC A7S012
#=GS A7S012/1-105       OS Nematostella vectensis
#=GS A7S012/1-105       DE Predicted protein
#=GS A7S012/1-105       DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS A7SUB6/1-98        AC A7SUB6
#=GS A7SUB6/1-98        OS Nematostella vectensis
#=GS A7SUB6/1-98        DE Predicted protein
#=GS A7SUB6/1-98        DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS T1FS71/190-299     AC T1FS71
#=GS T1FS71/190-299     OS Helobdella robusta
#=GS T1FS71/190-299     DE Uncharacterized protein
#=GS T1FS71/190-299     DR ORG; Eukaryota; Metazoa; Annelida; Clitellata; Hirudinea; Hirudinida; Glossiphoniiformes; Glossiphoniidae; Helobdella; Helobdella robusta; 
#=GS H3EB12/3-102       AC H3EB12
#=GS H3EB12/3-102       OS Pristionchus pacificus
#=GS H3EB12/3-102       DE Uncharacterized protein
#=GS H3EB12/3-102       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A0A162D0F7/6-112   AC A0A162D0F7
#=GS A0A162D0F7/6-112   OS Daphnia magna
#=GS A0A162D0F7/6-112   DE Hormone receptor 51
#=GS A0A162D0F7/6-112   DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A8XPV9/5-111       AC A8XPV9
#=GS A8XPV9/5-111       OS Caenorhabditis briggsae
#=GS A8XPV9/5-111       DE Protein CBR-NHR-236
#=GS A8XPV9/5-111       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5UCK0/5-110   AC A0A2G5UCK0
#=GS A0A2G5UCK0/5-110   OS Caenorhabditis nigoni
#=GS A0A2G5UCK0/5-110   DE Uncharacterized protein
#=GS A0A2G5UCK0/5-110   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A0P6CBH5/19-125  AC A0A0P6CBH5
#=GS A0A0P6CBH5/19-125  OS Daphnia magna
#=GS A0A0P6CBH5/19-125  DE Nuclear receptor subfamily 2 group E member
#=GS A0A0P6CBH5/19-125  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A0A0P5QCW0/3-109   AC A0A0P5QCW0
#=GS A0A0P5QCW0/3-109   OS Daphnia magna
#=GS A0A0P5QCW0/3-109   DE Nuclear receptor subfamily 2 group E member
#=GS A0A0P5QCW0/3-109   DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GF SQ 13
Q9N418/7-108               -IP---ESQCCRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYSCKESGDCVIDVTRRNQCQACRFQKCITVAMNRH-----------AVQHERLGAPPEPKPTQTLIKAKRIRK---------------
Q7PXD3/21-117              ------PGALCKVCGDRASGKHYGVPSCDGCRGFFKRSIRRNLEYVCKEGGKCVVDVSRRNQCQACRFAKCLQANMRREGKLHTHTHKPTSVQHER-----APRNCTP------------------------
E9HQ29/2-106               -GSRNKLEALCLVCGDKASGRHYGVSSCDGCRGFFKRSIRRNLDYMCKESNQCIVDVSRRNQCQACRFRRCLEVKMKRD-----------AVQHER-----APRGALKRSYQPEL---DPTVQTN-------
D6WNH4/4-102               SIPSNKTESLCRVCGDKASGKHYGVSSCDGCRGFFKRSIRRNLEYVCKENGRCIVDVTRRNQCQACRFKKCLQVNMKRD-----------AVQHER-----APRSTQSGLHQYPL-----------------
A7S012/1-105               -------TVQCRVCGDRASGKHYGVMTCDGCRGFFKRSVRRNLAYQCKEKNDCPIDVARRNQCQACRLRKCFEMNMNRD-----------AVQHER-----APRTSQIRQNSQSK---P-LKRKHISIENMS
A7SUB6/1-98                ----------CRVCGDRSSGKHYGVFTCDGCRGFFKRSIRRNLTYHCKELGKCVVDVARRNQCQACRLKKCFEVQMNKD-----------AVQHER-----APRSAQILPRATSTTTID-LNKED-------
T1FS71/190-299             YIPRS-KPSCCLVCHDRASGNHYGVLTCDGCRGFFKRSVRRNMTYICKFGDRCKIDVARRNQCQACRFKKCLQVSMNRD-----------AVQQQR-----DAIKTNASKRSRSFWEDE-DGEDD----NLK
H3EB12/3-102               -----RPELPCLVCGDRSSGRHYGVQSCDGCRGFFKRSVRRNLQYTCKDGDSCIVDVIRRNQCQSCRLKKCFLVNMNKH-----------AVQHER--T--LPKQSESSKKSSLERSAP------------S
A0A162D0F7/6-112           -GPRNKMEALCLVCGDKASGRHYGVSSCDGCRGFFKRSIRRNLDYLCKESNQCVVDVSRRNQCQACRFRRCLEVKMKRD-----------AVQHER-----APRGALKRSFQPEA---D-TIQTHAT----S
A8XPV9/5-111               ---CNVEPPSCRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKEAKRCVIDVVRRNQCQSCRFQKCLAVSMNRH-----------AVQHERLDT--PPRSTAPAVRTKKVKKIK-LPET--------
A0A2G5UCK0/5-110           ---CNVEPPICRVCGDRASGRHYGVLSCDGCRGFFKRSIRRNLRYTCKEAKRCVIDVVRRNQCQSCRFQKCLAVSMNRH-----------AVQHERLET--PPRPTAPAIRTKKVKKIK-LPE---------
A0A0P6CBH5/19-125          -GPRNKMEALCLVCGDKASGRHYGVSSCDGCRGFFKRSIRRNLDYLCKESNQCVVDVSRRNQCQACRFRRCLEVKMKRD-----------AVQHER-----APRGALKRSFQPEA---D-TIQTHAT----S
A0A0P5QCW0/3-109           -GPRNKMEALCLVCGDKASGRHYGVSSCDGCRGFFKRSIRRNLDYLCKESNQCVVDVSRRNQCQACRFRRCLEVKMKRD-----------AVQHER-----APRGALKRSFQPEA---D-TIQTHAT----S
#=GC scorecons             011121233394997977996999936999999999997999839399634495799499999969975796474957500000000000799889000004863433222322200020112110000001
#=GC scorecons_70          __________*_*************_*****************_*_***___*_***_**********_***_*_*_*____________******______**____________________________
#=GC scorecons_80          __________*_********_****__****************_*_**____*__**_******_**__**__*_*_*____________******______*_____________________________
#=GC scorecons_90          __________*_**_*__**_****__***********_****_*_**____*__**_******_**___*____*_______________*****____________________________________
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