# STOCKHOLM 1.0
#=GF ID 3.30.450.20/FF/000105
#=GF DE Uncharacterized protein, isoform A
#=GF AC 3.30.450.20/FF/000105
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 58.909
#=GS Q9VXW7/530-675      AC Q9VXW7
#=GS Q9VXW7/530-675      OS Drosophila melanogaster
#=GS Q9VXW7/530-675      DE Germ cell-expressed bHLH-PAS, isoform C
#=GS Q9VXW7/530-675      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VXW7/530-675      DR GO; GO:0003700; GO:0004879; GO:0005500; GO:0005634; GO:0006355; GO:0008134; GO:0035626; GO:0043069; GO:0045944; GO:0046982; 
#=GS Q9VYW2/394-535      AC Q9VYW2
#=GS Q9VYW2/394-535      OS Drosophila melanogaster
#=GS Q9VYW2/394-535      DE FI10506p
#=GS Q9VYW2/394-535      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS Q9VYW2/394-535      DR GO; GO:0004879; GO:0005515; GO:0005634; GO:0008134; GO:0042803; GO:0043069; GO:0045944; GO:0046982; GO:0050793; 
#=GS O44118/394-535      AC O44118
#=GS O44118/394-535      OS Drosophila melanogaster
#=GS O44118/394-535      DE Juvenile hormone resistance protein
#=GS O44118/394-535      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila melanogaster; 
#=GS O44118/394-535      DR GO; GO:0004879; GO:0005634; GO:0008134; GO:0042803; GO:0043069; GO:0045944; GO:0046982; GO:0050793; 
#=GS A6MUT7/240-378      AC A6MUT7
#=GS A6MUT7/240-378      OS Tribolium castaneum
#=GS A6MUT7/240-378      DE Circadian locomoter output cycles protein kaput-like Protein
#=GS A6MUT7/240-378      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A6MUT7/240-378      DR GO; GO:0042802; 
#=GS A0A139WJY1/275-413  AC A0A139WJY1
#=GS A0A139WJY1/275-413  OS Tribolium castaneum
#=GS A0A139WJY1/275-413  DE Circadian locomoter output cycles protein kaput-like Protein
#=GS A0A139WJY1/275-413  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS B5U9B2/249-387      AC B5U9B2
#=GS B5U9B2/249-387      OS Tribolium castaneum
#=GS B5U9B2/249-387      DE Methoprene-tolerant
#=GS B5U9B2/249-387      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Coleoptera; Polyphaga; Cucujiformia; Tenebrionoidea; Tenebrionidae; Tribolium; Tribolium castaneum; 
#=GS A0A1W4VFK7/554-697  AC A0A1W4VFK7
#=GS A0A1W4VFK7/554-697  OS Drosophila ficusphila
#=GS A0A1W4VFK7/554-697  DE uncharacterized protein LOC108094642
#=GS A0A1W4VFK7/554-697  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4PWL1/534-677      AC B4PWL1
#=GS B4PWL1/534-677      OS Drosophila yakuba
#=GS B4PWL1/534-677      DE Uncharacterized protein, isoform A
#=GS B4PWL1/534-677      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS Q29JD8/292-441      AC Q29JD8
#=GS Q29JD8/292-441      OS Drosophila pseudoobscura pseudoobscura
#=GS Q29JD8/292-441      DE Uncharacterized protein
#=GS Q29JD8/292-441      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS A0A3B0J9S9/623-769  AC A0A3B0J9S9
#=GS A0A3B0J9S9/623-769  OS Drosophila guanche
#=GS A0A3B0J9S9/623-769  DE Blast:Aryl hydrocarbon receptor nuclear translocator homolog
#=GS A0A3B0J9S9/623-769  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GS B3MR82/572-716      AC B3MR82
#=GS B3MR82/572-716      OS Drosophila ananassae
#=GS B3MR82/572-716      DE Uncharacterized protein
#=GS B3MR82/572-716      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B3NTM6/539-682      AC B3NTM6
#=GS B3NTM6/539-682      OS Drosophila erecta
#=GS B3NTM6/539-682      DE Uncharacterized protein, isoform A
#=GS B3NTM6/539-682      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS B4R561/275-418      AC B4R561
#=GS B4R561/275-418      OS Drosophila simulans
#=GS B4R561/275-418      DE GD17204
#=GS B4R561/275-418      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS A0A1W4V7S5/388-529  AC A0A1W4V7S5
#=GS A0A1W4V7S5/388-529  OS Drosophila ficusphila
#=GS A0A1W4V7S5/388-529  DE uncharacterized protein LOC108095586
#=GS A0A1W4V7S5/388-529  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ficusphila subgroup; Drosophila ficusphila; 
#=GS B4IK44/392-533      AC B4IK44
#=GS B4IK44/392-533      OS Drosophila sechellia
#=GS B4IK44/392-533      DE GM13098
#=GS B4IK44/392-533      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila sechellia; 
#=GS B4R357/380-521      AC B4R357
#=GS B4R357/380-521      OS Drosophila simulans
#=GS B4R357/380-521      DE GD17037
#=GS B4R357/380-521      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila simulans; 
#=GS B3MXI8/395-535      AC B3MXI8
#=GS B3MXI8/395-535      OS Drosophila ananassae
#=GS B3MXI8/395-535      DE Uncharacterized protein
#=GS B3MXI8/395-535      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; ananassae subgroup; Drosophila ananassae; 
#=GS B4Q1S7/393-532      AC B4Q1S7
#=GS B4Q1S7/393-532      OS Drosophila yakuba
#=GS B4Q1S7/393-532      DE Uncharacterized protein
#=GS B4Q1S7/393-532      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila yakuba; 
#=GS Q29IE6/416-556      AC Q29IE6
#=GS Q29IE6/416-556      OS Drosophila pseudoobscura pseudoobscura
#=GS Q29IE6/416-556      DE Uncharacterized protein
#=GS Q29IE6/416-556      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; pseudoobscura subgroup; Drosophila pseudoobscura; Drosophila pseudoobscura pseudoobscura; 
#=GS B3NUA7/389-529      AC B3NUA7
#=GS B3NUA7/389-529      OS Drosophila erecta
#=GS B3NUA7/389-529      DE Uncharacterized protein
#=GS B3NUA7/389-529      DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; melanogaster group; melanogaster subgroup; Drosophila erecta; 
#=GS A0A3B0L0G2/424-564  AC A0A3B0L0G2
#=GS A0A3B0L0G2/424-564  OS Drosophila guanche
#=GS A0A3B0L0G2/424-564  DE Blast:Aryl hydrocarbon receptor nuclear translocator-like protein 1
#=GS A0A3B0L0G2/424-564  DR ORG; Eukaryota; Metazoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Holometabola; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophilinae; Drosophilini; Drosophila; Sophophora; obscura group; obscura subgroup; Drosophila guanche; 
#=GF SQ 21
Q9VXW7/530-675              --SRLIDANTLEYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTIDVPAS----
Q9VYW2/394-535              --YRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKEKFSTIIKAEMPTQSSS--------
O44118/394-535              --YRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKEKFSTIIKAEMPTQSSS--------
A6MUT7/240-378              LCERLFEASREEYVTRHLIDGRIIGCDQRISFIAGYMTEEVSGLSAFKFMHREDVRWVMIALRQMYDRGESKGSSCYRLLSRNGQFIYLRTFGFLEIDDQ-GTVESFVCVNTLVSEQEGLQLINEMKKRYSALINSQ------SCP------
A0A139WJY1/275-413          LCERLFEASREEYVTRHLIDGRIIGCDQRISFIAGYMTEEVSGLSAFKFMHREDVRWVMIALRQMYDRGESKGSSCYRLLSRNGQFIYLRTFGFLEIDDQ-GTVESFVCVNTLVSEQEGLQLINEMKKRYSALINSQ------SCP------
B5U9B2/249-387              LCERLFEASREEYVTRHLIDGRIIGCDQRISFIAGYMTEEVSGLSAFKFMHREDVRWVMIALRQMYDRGESKGSSCYRLLSRNGQFIYLRTFGFLEIDDQ-GTVESFVCVNTLVSEQEGLQLINEMKKRYSALINSQ------SCP------
A0A1W4VFK7/554-697          --SRLIDANTLEYRTRHLIDGRIIDCDQRIGIVAGYMTEEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLSEEEGKRRVQEMKKKFSVIINTQIPQSTVDVP------
B4PWL1/534-677              --SRLIDANTLEYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTVDVP------
Q29JD8/292-441              --SRLIDANSLEYRTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLDDEEGKRRVQEMKKKFSVIINTQIPQSTIDVPASEHPA
A0A3B0J9S9/623-769          --SRLIDANTLEYRTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLDDEEGKRRVQEMKKKFSVIINTQIPQSTIDVPASE---
B3MR82/572-716              -ASRQIDANTLEYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLDDEEGKRRVQEMKKKFSVIINTQIPQSTVDVP------
B3NTM6/539-682              --SRLIDANTMEYKTRHLIDGRIVDCDQRIGIVAGYMTDEVRHLSPFTFMHNDDVRWVIVALRQMYDCNSSYGESTYRLFTRNGSIIYLQSKGYLEIEKETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQATIDVP------
B4R561/275-418              --SRLIDANTLEYKTRHLIDGRIIDCDQRIGIVAGYMTDEVRNLSPFTFMHNEDVRWVIVALRQMYDCNSSYGESTYRLFTRNGNIIYLQSKGYLEIDKETNKVHSFVCVNTLLGEEEGKRRVQEMKKKFSVIINTQIPQSTVDVP------
A0A1W4V7S5/388-529          --YRQPEPYQLEYQTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEIDRGSNKVHSFLCVNTLLDEKAGRQKVQEMKEKFSTIIKAEMPTQSSS--------
B4IK44/392-533              --YRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEEGRQKVQEMKEKFSTIIKAEMPTQSSS--------
B4R357/380-521              --YRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKEKFSTIIKAEMPTQSSS--------
B3MXI8/395-535              ---RQPEPYQLEYRTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSNYGESCYRLLSRNGRFIYLHTKGFLDIDSGSNQVHSFLCVNTLLDEEAGRQKVLEMKEKFSTIIKADMPSQTTS--------
B4Q1S7/393-532              --YRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKEKFSTIIKTDVPTQS----------
Q29IE6/416-556              --YRQPEPYQLEYRTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEIDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKNKFSTIIKADVPTQSS---------
B3NUA7/389-529              --YRQPEPYQLEYHTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEVDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKEKFSTIIKTDIPTQSS---------
A0A3B0L0G2/424-564          --YRQPEPYQLEYRTRHLIDGSIIDCDQRIGLVAGYMKDEVRNLSPFCFMHLDDVRWVIVALRQMYDCNSDYGESCYRLLSRNGRFIYLHTKGFLEIDRGSNKVHSFLCVNTLLDEEAGRQKVQEMKNKFSTIIKADVPTQSS---------
#=GC scorecons              00395476445994999999959869999965799995799669969499937999997799999996665696959996699946999565979878553669699699999758659464769995779579655353332413000000
#=GC scorecons_70           ___*__*____**_*******_*********_*****_*********_***_******************__***_********__***_*_******___*_***********_**_*_*_*_***_***_**__________________
#=GC scorecons_80           ___*__*____**_*******_**_*****__*****_***__**_*_***_***************_____*_*_***__***__***___******_____*_**_*****__*__*___*_***_***__*__________________
#=GC scorecons_90           ___*_______**_*******_**_*****___****__**__**_*_***__*****__*******_____*_*_***__***__***___*_**_*_____*_**_*****_____*_____***___*__*__________________
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