# STOCKHOLM 1.0
#=GF ID 3.30.40.10/FF/000619
#=GF DE Putative E3 ubiquitin-protein ligase HERC1
#=GF AC 3.30.40.10/FF/000619
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 69.494
#=GS Q947D2/641-700      AC Q947D2
#=GS Q947D2/641-700      OS Arabidopsis thaliana
#=GS Q947D2/641-700      DE PH, RCC1 and FYVE domains-containing protein 1
#=GS Q947D2/641-700      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q947D2/641-700      DR GO; GO:0017112; GO:0035091; GO:0070300; 
#=GS Q9SRZ7/640-708      AC Q9SRZ7
#=GS Q9SRZ7/640-708      OS Arabidopsis thaliana
#=GS Q9SRZ7/640-708      DE F12P19.9 protein
#=GS Q9SRZ7/640-708      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SRZ7/640-708      DR GO; GO:0005773; GO:0005886; 
#=GS F4K0X5/654-729      AC F4K0X5
#=GS F4K0X5/654-729      OS Arabidopsis thaliana
#=GS F4K0X5/654-729      DE Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
#=GS F4K0X5/654-729      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4K0X5/654-729      DR GO; GO:0005886; 
#=GS A0A1P8BC78/658-733  AC A0A1P8BC78
#=GS A0A1P8BC78/658-733  OS Arabidopsis thaliana
#=GS A0A1P8BC78/658-733  DE Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
#=GS A0A1P8BC78/658-733  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178WMI8/641-700  AC A0A178WMI8
#=GS A0A178WMI8/641-700  OS Arabidopsis thaliana
#=GS A0A178WMI8/641-700  DE PRAF1
#=GS A0A178WMI8/641-700  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A078FNS1/668-744  AC A0A078FNS1
#=GS A0A078FNS1/668-744  OS Brassica napus
#=GS A0A078FNS1/668-744  DE BnaC09g38280D protein
#=GS A0A078FNS1/668-744  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A1J3EEK1/644-703  AC A0A1J3EEK1
#=GS A0A1J3EEK1/644-703  OS Noccaea caerulescens
#=GS A0A1J3EEK1/644-703  DE Putative E3 ubiquitin-protein ligase HERC1
#=GS A0A1J3EEK1/644-703  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS R0HX99/642-702      AC R0HX99
#=GS R0HX99/642-702      OS Capsella rubella
#=GS R0HX99/642-702      DE Uncharacterized protein
#=GS R0HX99/642-702      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A0D3EE22/652-728  AC A0A0D3EE22
#=GS A0A0D3EE22/652-728  OS Brassica oleracea var. oleracea
#=GS A0A0D3EE22/652-728  DE Uncharacterized protein
#=GS A0A0D3EE22/652-728  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS D7M4I7/654-729      AC D7M4I7
#=GS D7M4I7/654-729      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M4I7/654-729      DE Ran GTPase binding protein
#=GS D7M4I7/654-729      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS M4DGT2/627-687      AC M4DGT2
#=GS M4DGT2/627-687      OS Brassica rapa subsp. pekinensis
#=GS M4DGT2/627-687      DE Uncharacterized protein
#=GS M4DGT2/627-687      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A3P6FWT7/632-691  AC A0A3P6FWT7
#=GS A0A3P6FWT7/632-691  OS Brassica oleracea
#=GS A0A3P6FWT7/632-691  DE Uncharacterized protein
#=GS A0A3P6FWT7/632-691  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A0D3CW98/632-691  AC A0A0D3CW98
#=GS A0A0D3CW98/632-691  OS Brassica oleracea var. oleracea
#=GS A0A0D3CW98/632-691  DE Uncharacterized protein
#=GS A0A0D3CW98/632-691  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS D7KTY5/641-700      AC D7KTY5
#=GS D7KTY5/641-700      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KTY5/641-700      DE Zinc finger protein
#=GS D7KTY5/641-700      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS M4CHL5/623-682      AC M4CHL5
#=GS M4CHL5/623-682      OS Brassica rapa subsp. pekinensis
#=GS M4CHL5/623-682      DE Uncharacterized protein
#=GS M4CHL5/623-682      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A1J3JVJ2/645-703  AC A0A1J3JVJ2
#=GS A0A1J3JVJ2/645-703  OS Noccaea caerulescens
#=GS A0A1J3JVJ2/645-703  DE Putative E3 ubiquitin-protein ligase HERC1
#=GS A0A1J3JVJ2/645-703  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS A0A078ICF7/542-601  AC A0A078ICF7
#=GS A0A078ICF7/542-601  OS Brassica napus
#=GS A0A078ICF7/542-601  DE BnaC06g18700D protein
#=GS A0A078ICF7/542-601  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GF SQ 17
Q947D2/641-700              -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIN------
Q9SRZ7/640-708              ----DQTACSSCKSAFGFTRRKHNCYNCGLLFCNACSSKKAVNASLAPNKSKLSRVCDSCFDHLWSITEFSRN----
F4K0X5/654-729              ASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVCDKCFNKLKKTMETDPSSHS-
A0A1P8BC78/658-733          ASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVCDRCFNKLKKAMETDPSSHS-
A0A178WMI8/641-700          -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIN------
A0A078FNS1/668-744          ASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVCDKCYNKLKKTIEADASSHSS
A0A1J3EEK1/644-703          -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSRKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
R0HX99/642-702              ----------TCRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
A0A0D3EE22/652-728          ASGMDQSMCSGCRQPFNFKRKRHNCYNCGLVFCHSCSNKKSLKACMAPNPNKPYRVCDKCYNKLKKTIEADASSHSS
D7M4I7/654-729              ASGMDQSMCSGCRQPFSFKRKRHNCYNCGLVFCHSCTSKKSLKACMAPNPNKPYRVCDKCFNKLKKTMETDPSSHS-
M4DGT2/627-687              -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFGAALAPSAGRLYRVCDVCYVKLSKVSDTSR-----
A0A3P6FWT7/632-691          -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
A0A0D3CW98/632-691          -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
D7KTY5/641-700              -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIN------
M4CHL5/623-682              -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
A0A1J3JVJ2/645-703          ------------RLAFGFTRKRHNCYNCGLVHCHSCSSRKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
A0A078ICF7/542-601          -----------CRLAFGFTRKRHNCYNCGLVHCHSCSSKKAFRAALAPSAGRLYRVCDSCYVKLSKVSEIS------
#=GC scorecons              11112211221884695959889999999985988976896559569965575799994974894754845111110
#=GC scorecons_70           ___________**__*_*_************_********___*_***___*_*****_**_**_*__*________
#=GC scorecons_80           ___________**__*_*_************_*****_**___*__**_____*****_**_**_*__*________
#=GC scorecons_90           ___________**__*_*_************_*__*__**___*__**______****_*___*____*________
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