# STOCKHOLM 1.0
#=GF ID 3.30.40.10/FF/000540
#=GF DE E3 ubiquitin-protein ligase RDUF1
#=GF AC 3.30.40.10/FF/000540
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 81.705
#=GS O64867/59-143       AC O64867
#=GS O64867/59-143       OS Arabidopsis thaliana
#=GS O64867/59-143       DE At2g44330
#=GS O64867/59-143       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS O64867/59-143       DR GO; GO:0004842; 
#=GS A0A384LJY6/123-216  AC A0A384LJY6
#=GS A0A384LJY6/123-216  OS Arabidopsis thaliana
#=GS A0A384LJY6/123-216  DE Uncharacterized protein
#=GS A0A384LJY6/123-216  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9M1D5/123-216      AC Q9M1D5
#=GS Q9M1D5/123-216      OS Arabidopsis thaliana
#=GS Q9M1D5/123-216      DE At3g60080
#=GS Q9M1D5/123-216      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A178VW17/59-143   AC A0A178VW17
#=GS A0A178VW17/59-143   OS Arabidopsis thaliana
#=GS A0A178VW17/59-143   DE Uncharacterized protein
#=GS A0A178VW17/59-143   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F6HPS6/115-196      AC F6HPS6
#=GS F6HPS6/115-196      OS Vitis vinifera
#=GS F6HPS6/115-196      DE Uncharacterized protein
#=GS F6HPS6/115-196      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS Q5JME3/96-178       AC Q5JME3
#=GS Q5JME3/96-178       OS Oryza sativa Japonica Group
#=GS Q5JME3/96-178       DE Os01g0972000 protein
#=GS Q5JME3/96-178       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS A0A445JWE2/127-205  AC A0A445JWE2
#=GS A0A445JWE2/127-205  OS Glycine soja
#=GS A0A445JWE2/127-205  DE E3 ubiquitin-protein ligase RDUF1
#=GS A0A445JWE2/127-205  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS V4LK43/125-222      AC V4LK43
#=GS V4LK43/125-222      OS Eutrema salsugineum
#=GS V4LK43/125-222      DE Uncharacterized protein
#=GS V4LK43/125-222      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A1J3DHD1/117-212  AC A0A1J3DHD1
#=GS A0A1J3DHD1/117-212  OS Noccaea caerulescens
#=GS A0A1J3DHD1/117-212  DE E3 ubiquitin-protein ligase RING1-like
#=GS A0A1J3DHD1/117-212  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS R0FQL7/124-219      AC R0FQL7
#=GS R0FQL7/124-219      OS Capsella rubella
#=GS R0FQL7/124-219      DE Uncharacterized protein
#=GS R0FQL7/124-219      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7LWK7/119-212      AC D7LWK7
#=GS D7LWK7/119-212      OS Arabidopsis lyrata subsp. lyrata
#=GS D7LWK7/119-212      DE Zinc finger family protein
#=GS D7LWK7/119-212      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS K7L1H7/127-205      AC K7L1H7
#=GS K7L1H7/127-205      OS Glycine max
#=GS K7L1H7/127-205      DE Uncharacterized protein
#=GS K7L1H7/127-205      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS I1NVN3/96-178       AC I1NVN3
#=GS I1NVN3/96-178       OS Oryza glaberrima
#=GS I1NVN3/96-178       DE Uncharacterized protein
#=GS I1NVN3/96-178       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; 
#=GS A0A0D3EZ79/96-178   AC A0A0D3EZ79
#=GS A0A0D3EZ79/96-178   OS Oryza barthii
#=GS A0A0D3EZ79/96-178   DE Uncharacterized protein
#=GS A0A0D3EZ79/96-178   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; 
#=GS A0A0E0N871/96-178   AC A0A0E0N871
#=GS A0A0E0N871/96-178   OS Oryza rufipogon
#=GS A0A0E0N871/96-178   DE Uncharacterized protein
#=GS A0A0E0N871/96-178   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza rufipogon; 
#=GS A0A0D9YKP4/96-178   AC A0A0D9YKP4
#=GS A0A0D9YKP4/96-178   OS Oryza glumipatula
#=GS A0A0D9YKP4/96-178   DE Uncharacterized protein
#=GS A0A0D9YKP4/96-178   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glumipatula; 
#=GS A0A0E0CDJ5/87-171   AC A0A0E0CDJ5
#=GS A0A0E0CDJ5/87-171   OS Oryza meridionalis
#=GS A0A0E0CDJ5/87-171   DE Uncharacterized protein
#=GS A0A0E0CDJ5/87-171   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza meridionalis; 
#=GS A0A0E0FZI6/96-178   AC A0A0E0FZI6
#=GS A0A0E0FZI6/96-178   OS Oryza sativa f. spontanea
#=GS A0A0E0FZI6/96-178   DE Uncharacterized protein
#=GS A0A0E0FZI6/96-178   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; Oryza sativa f. spontanea; 
#=GS A2WZK8/96-178       AC A2WZK8
#=GS A2WZK8/96-178       OS Oryza sativa Indica Group
#=GS A2WZK8/96-178       DE Uncharacterized protein
#=GS A2WZK8/96-178       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; 
#=GS I1N2J5/128-206      AC I1N2J5
#=GS I1N2J5/128-206      OS Glycine max
#=GS I1N2J5/128-206      DE Uncharacterized protein
#=GS I1N2J5/128-206      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS A0A445FUN4/128-206  AC A0A445FUN4
#=GS A0A445FUN4/128-206  OS Glycine soja
#=GS A0A445FUN4/128-206  DE E3 ubiquitin-protein ligase RDUF1
#=GS A0A445FUN4/128-206  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GF SQ 21
O64867/59-143               FEDDEESQFLDP---------MESLPTIKISSSMLSSASSD------DSALPCAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVA
A0A384LJY6/123-216          -GSSSSSSSSSSSS-LLKSSDIDSIPTIQISSSLLCSTD--D--SDPDSVLLCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTT
Q9M1D5/123-216              -GSSSSSSSSSSSS-LLKSSDIDSIPTIQISSSLLCSTD--D--SDPDSVLLCAVCKEDFIIGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTT
A0A178VW17/59-143           FEDDEESQFLDP---------MESLPTIKISSSMLSSASSD------DSALPCAICREDFVVGESARRLPCNHLYHNDCIIPWLTSHNSCPLCRVELPVA
F6HPS6/115-196              --------YLNPNSVAASRASLEALPTFKITPSFLQL----------DPILFCAVCKDQFVVDVEAKRLPCNHIYHSDCILPWLSQQNSCPLCRFRLPTD
Q5JME3/96-178               --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLAAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTD
A0A445JWE2/127-205          --------GALPPT-AASKAAIESMPVVKILASHTYAESH------------CAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSD
V4LK43/125-222              -GSSSSSSSSSASS-LLKSSDIDSIPTIQISSSMLCSTDDDDSPPDPESVLLCAVCKEDFSVGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTA
A0A1J3DHD1/117-212          -GSSSSSSSSSASS-LLKSSDIDSIPTIQISSSMLCSTDISD--PDPDSVLLCAVCKEDFVVGESARRLPCSHIYHSGCIVPWLSDHNSCPLCRFELPTA
R0FQL7/124-219              -SGSSSSSSSSSSS-LLKSSDIDSIPTVQISSSMLCSTDGSD--PDPDSVLLCAVCKDDFVVGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTA
D7LWK7/119-212              -GSSSSSSSSSSSS-LLKSSDIDSIPTIQISSSMLCSTD--D--SDPDSVLLCAVCKEDFVVGESARRLPCSHIYHSDCIVPWLSDHNSCPLCRFELPTT
K7L1H7/127-205              --------GALPPT-AASKAAIESMPVVKILASHTYAESH------------CAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSD
I1NVN3/96-178               --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLADEAREMPCAHIYHHHCILPWLALHNSCPVCRHRMPTD
A0A0D3EZ79/96-178           --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLADEAREMPCAHIYHHHCILPWLALHNSCPVCRHRMPTD
A0A0E0N871/96-178           --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLAAEAREMPCAHIYHHNCILPWLALHNSCPVCRHRMPTD
A0A0D9YKP4/96-178           --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLAAEAREMPCAHIYHHHCILPWLALHNSCPVCRHRMPTD
A0A0E0CDJ5/87-171           --SSTASDNPNPNP-PASKAAVDSMPTILIGSSHLAADSH------------CAVCKEPFHLAAEAREMPCAHIYHHHCILPWLALHNSCPVCRHRMPTD
A0A0E0FZI6/96-178           --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLAAEAREMPCAHIYHHHCILPWLALHNSCPVCRHRMPTD
A2WZK8/96-178               --IPSASD--NPNP-PASKAAVDSMPTILIGACHLAADSH------------CAVCKEPFHLAAEAREMPCAHIYHHHCILPWLALHNSCPVCRHRMPTD
I1N2J5/128-206              --------APPPPA-AASKAAIESMPVVKILASHTYAESH------------CAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSD
A0A445FUN4/128-206          --------APPPPA-AASKAAIESMPVVKILASHTYAESH------------CAVCMENFEINCDAREMPCGHVYHSECIVPWLSVRNSCPVCRHEVPSD
#=GC scorecons              0022324212463303444446786966494564645453000000011111998958493543598569949699559969995369999699566965
#=GC scorecons_70           ___________*_________***_***_*__*_*_________________****_*_*_____**_***_****__**_***__********___*__
#=GC scorecons_80           ______________________**_*___*______________________****_*_*_____**__**_*_**__**_***___****_**___*__
#=GC scorecons_90           _______________________*_*___*______________________****_*_*_____**__**_*_**__**_***___****_**___*__
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