# STOCKHOLM 1.0 #=GF ID 3.30.40.10/FF/000449 #=GF DE General transcription factor IIH subunit #=GF AC 3.30.40.10/FF/000449 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 84.318 #=GS Q9ZVN9/337-416 AC Q9ZVN9 #=GS Q9ZVN9/337-416 OS Arabidopsis thaliana #=GS Q9ZVN9/337-416 DE General transcription factor IIH subunit 2 #=GS Q9ZVN9/337-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS Q9ZVN9/337-416 DR GO; GO:0005675; GO:0006289; GO:0006357; #=GS Q86KZ2/350-422 AC Q86KZ2 #=GS Q86KZ2/350-422 OS Dictyostelium discoideum #=GS Q86KZ2/350-422 DE General transcription factor IIH subunit 2 #=GS Q86KZ2/350-422 DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium discoideum; #=GS Q86KZ2/350-422 DR GO; GO:0005675; GO:0006289; GO:0006366; #=GS Q0WLZ8/112-191 AC Q0WLZ8 #=GS Q0WLZ8/112-191 OS Arabidopsis thaliana #=GS Q0WLZ8/112-191 DE Putative transcription factor #=GS Q0WLZ8/112-191 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A0A178W5Z7/337-416 AC A0A178W5Z7 #=GS A0A178W5Z7/337-416 OS Arabidopsis thaliana #=GS A0A178W5Z7/337-416 DE General transcription factor IIH subunit #=GS A0A178W5Z7/337-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; #=GS A8IDI5/341-411 AC A8IDI5 #=GS A8IDI5/341-411 OS Chlamydomonas reinhardtii #=GS A8IDI5/341-411 DE General transcription factor IIH subunit #=GS A8IDI5/341-411 DR ORG; Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadaceae; Chlamydomonas; Chlamydomonas reinhardtii; #=GS A0A0N7KJC3/419-495 AC A0A0N7KJC3 #=GS A0A0N7KJC3/419-495 OS Oryza sativa Japonica Group #=GS A0A0N7KJC3/419-495 DE General transcription factor IIH subunit #=GS A0A0N7KJC3/419-495 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa; #=GS F6GTZ1/350-428 AC F6GTZ1 #=GS F6GTZ1/350-428 OS Vitis vinifera #=GS F6GTZ1/350-428 DE General transcription factor IIH subunit #=GS F6GTZ1/350-428 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; #=GS A7S1M7/324-394 AC A7S1M7 #=GS A7S1M7/324-394 OS Nematostella vectensis #=GS A7S1M7/324-394 DE General transcription factor IIH subunit #=GS A7S1M7/324-394 DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; #=GS F0ZRU7/345-416 AC F0ZRU7 #=GS F0ZRU7/345-416 OS Dictyostelium purpureum #=GS F0ZRU7/345-416 DE General transcription factor IIH subunit #=GS F0ZRU7/345-416 DR ORG; Eukaryota; Dictyosteliales; Dictyosteliaceae; Dictyostelium; Dictyostelium purpureum; #=GS I1N8Q6/338-417 AC I1N8Q6 #=GS I1N8Q6/338-417 OS Glycine max #=GS I1N8Q6/338-417 DE General transcription factor IIH subunit #=GS I1N8Q6/338-417 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GS B9N7M5/337-412 AC B9N7M5 #=GS B9N7M5/337-412 OS Populus trichocarpa #=GS B9N7M5/337-412 DE General transcription factor IIH subunit #=GS B9N7M5/337-412 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; #=GS A0A078FTC6/338-417 AC A0A078FTC6 #=GS A0A078FTC6/338-417 OS Brassica napus #=GS A0A078FTC6/338-417 DE General transcription factor IIH subunit #=GS A0A078FTC6/338-417 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; #=GS R0GXI8/337-416 AC R0GXI8 #=GS R0GXI8/337-416 OS Capsella rubella #=GS R0GXI8/337-416 DE General transcription factor IIH subunit #=GS R0GXI8/337-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; #=GS B4G0C7/353-428 AC B4G0C7 #=GS B4G0C7/353-428 OS Zea mays #=GS B4G0C7/353-428 DE General transcription factor IIH subunit #=GS B4G0C7/353-428 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS I1IZI1/355-428 AC I1IZI1 #=GS I1IZI1/355-428 OS Brachypodium distachyon #=GS I1IZI1/355-428 DE General transcription factor IIH subunit #=GS I1IZI1/355-428 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS D7KEA7/337-416 AC D7KEA7 #=GS D7KEA7/337-416 OS Arabidopsis lyrata subsp. lyrata #=GS D7KEA7/337-416 DE General transcription factor IIH subunit #=GS D7KEA7/337-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; #=GS A0A397YHW5/338-417 AC A0A397YHW5 #=GS A0A397YHW5/338-417 OS Brassica rapa #=GS A0A397YHW5/338-417 DE General transcription factor IIH subunit #=GS A0A397YHW5/338-417 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; #=GS A0A0L9U7F7/338-416 AC A0A0L9U7F7 #=GS A0A0L9U7F7/338-416 OS Vigna angularis #=GS A0A0L9U7F7/338-416 DE General transcription factor IIH subunit #=GS A0A0L9U7F7/338-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna angularis; #=GS A0A151TTW3/338-417 AC A0A151TTW3 #=GS A0A151TTW3/338-417 OS Cajanus cajan #=GS A0A151TTW3/338-417 DE General transcription factor IIH subunit #=GS A0A151TTW3/338-417 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Cajanus; Cajanus cajan; #=GS V7CV58/338-417 AC V7CV58 #=GS V7CV58/338-417 OS Phaseolus vulgaris #=GS V7CV58/338-417 DE General transcription factor IIH subunit #=GS V7CV58/338-417 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus; Phaseolus vulgaris; #=GS M4EP82/338-417 AC M4EP82 #=GS M4EP82/338-417 OS Brassica rapa subsp. pekinensis #=GS M4EP82/338-417 DE General transcription factor IIH subunit #=GS M4EP82/338-417 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; #=GS A0A1S3TB99/338-416 AC A0A1S3TB99 #=GS A0A1S3TB99/338-416 OS Vigna radiata var. radiata #=GS A0A1S3TB99/338-416 DE General transcription factor IIH subunit #=GS A0A1S3TB99/338-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna radiata; Vigna radiata var. radiata; #=GS C5YBY0/356-430 AC C5YBY0 #=GS C5YBY0/356-430 OS Sorghum bicolor #=GS C5YBY0/356-430 DE General transcription factor IIH subunit #=GS C5YBY0/356-430 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Sorghinae; Sorghum; Sorghum bicolor; #=GS A0A445HYC3/338-416 AC A0A445HYC3 #=GS A0A445HYC3/338-416 OS Glycine soja #=GS A0A445HYC3/338-416 DE General transcription factor IIH subunit #=GS A0A445HYC3/338-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; #=GS A0A0S3RX30/338-416 AC A0A0S3RX30 #=GS A0A0S3RX30/338-416 OS Vigna angularis var. angularis #=GS A0A0S3RX30/338-416 DE General transcription factor IIH subunit #=GS A0A0S3RX30/338-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna; Vigna angularis; Vigna angularis var. angularis; #=GS A0A0D9W6Z7/372-448 AC A0A0D9W6Z7 #=GS A0A0D9W6Z7/372-448 OS Leersia perrieri #=GS A0A0D9W6Z7/372-448 DE General transcription factor IIH subunit #=GS A0A0D9W6Z7/372-448 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS J3LZG4/357-433 AC J3LZG4 #=GS J3LZG4/357-433 OS Oryza brachyantha #=GS J3LZG4/357-433 DE General transcription factor IIH subunit #=GS J3LZG4/357-433 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza brachyantha; #=GS I1PMX0/357-433 AC I1PMX0 #=GS I1PMX0/357-433 OS Oryza glaberrima #=GS I1PMX0/357-433 DE General transcription factor IIH subunit #=GS I1PMX0/357-433 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza glaberrima; #=GS A0A0D3FXT3/357-433 AC A0A0D3FXT3 #=GS A0A0D3FXT3/357-433 OS Oryza barthii #=GS A0A0D3FXT3/357-433 DE General transcription factor IIH subunit #=GS A0A0D3FXT3/357-433 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza barthii; #=GS A0A0E0KSM8/356-432 AC A0A0E0KSM8 #=GS A0A0E0KSM8/356-432 OS Oryza punctata #=GS A0A0E0KSM8/356-432 DE General transcription factor IIH subunit #=GS A0A0E0KSM8/356-432 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza punctata; #=GS A0A1D6E6A5/275-350 AC A0A1D6E6A5 #=GS A0A1D6E6A5/275-350 OS Zea mays #=GS A0A1D6E6A5/275-350 DE General transcription factor IIH subunit 2 #=GS A0A1D6E6A5/275-350 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A3L6FPX0/275-350 AC A0A3L6FPX0 #=GS A0A3L6FPX0/275-350 OS Zea mays #=GS A0A3L6FPX0/275-350 DE General transcription factor IIH subunit 2 #=GS A0A3L6FPX0/275-350 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Panicoideae; Andropogoneae; Tripsacinae; Zea; Zea mays; #=GS A0A0D9W6Z6/359-435 AC A0A0D9W6Z6 #=GS A0A0D9W6Z6/359-435 OS Leersia perrieri #=GS A0A0D9W6Z6/359-435 DE General transcription factor IIH subunit #=GS A0A0D9W6Z6/359-435 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Oryzoideae; Oryzeae; Oryzinae; Leersia; Leersia perrieri; #=GS A0A0Q3IBK3/242-315 AC A0A0Q3IBK3 #=GS A0A0Q3IBK3/242-315 OS Brachypodium distachyon #=GS A0A0Q3IBK3/242-315 DE Uncharacterized protein #=GS A0A0Q3IBK3/242-315 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Liliopsida; Petrosaviidae; Poales; Poaceae; Pooideae; Brachypodieae; Brachypodium; Brachypodium distachyon; #=GS I1LHY4/338-416 AC I1LHY4 #=GS I1LHY4/338-416 OS Glycine max #=GS I1LHY4/338-416 DE General transcription factor IIH subunit #=GS I1LHY4/338-416 DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; #=GF SQ 35 Q9ZVN9/337-416 FPIAPFDEVPALSSLNDNRRKLGK---SCFGCQQSLIGAGNKPVPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- Q86KZ2/350-422 FQIPLFNEVNW-KELN-----KNV---TCIGCLSS--SEKSILSLF--FSCPRCQEIFCLDCDLFIHESLHNCPGCENKLQNTNTN Q0WLZ8/112-191 FPIAPFDEVPALSSLNDNRRKLGK---SCFGCQQSLIGAGNKPVPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- A0A178W5Z7/337-416 FPIAPFDEVPALSSLNDNRRKLGK---SCFGCQQSLIGAGNKPVPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- A8IDI5/341-411 FPVQPYHEDSE-VMTT-----TGA---YCFGCLREVSEPGVKGQLHLTLRCGQCKQVFCFECDAYVHESLHNCPGCEFLG------ A0A0N7KJC3/419-495 FPVQPFDEVSS-VHPNRLGQKGGQ---KCYGCQQSFINPDSQSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSSS--- F6GTZ1/350-428 FPIPPFDEVSL-SLLNNPHQRSSR---ACFGCQESLLIPGNKPTLC--VACPKCKQHFCLDCDIYIHESLHNCPGCESFRHSKIV- A7S1M7/324-394 FPLQQYTEVNV------PAQIPGQPPWTCQACQITLTEKTA-------CSCPECRHVFCLDCDIYIHESLHTCPGCTAHQVTVA-- F0ZRU7/345-416 FPIPLFEEVNW-KELN-----TNV---TCYSCLTS--SETSILSLF--FSCPRCDQVFCLECDMYIHEALHNCPGCENNLNTINN- I1N8Q6/338-417 FPIVMFDEVTP-SSQNDSNHSFPN---TCFGCQQSLLSQGNKPGLS--VICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVT B9N7M5/337-412 FPIAPFDEVKP-SRQNEPHRRSQK---TCFGCQQSLVNPGNKPSLQ--VACPKCKQYFCLDCDIYIHESLHNCPGCESLRAS---- A0A078FTC6/338-417 FPIAPFDEVPTLTSANDPRRKLGK---SCFGCQQSLLGAGNKPGPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- R0GXI8/337-416 FPIAPFDEVPALSSLNDSRKDLGK---SCFGCQQSLNGAGNKPGPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- B4G0C7/353-428 FPVPPFDEVTP-V-PNRI-QRGGQ---ICFSCQQSLYNPDGQSNLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSIAS-- I1IZI1/355-428 FPVAPFDEVTF-----KLGQKGGQ---NCYGCQQSLINSDSQSNLH--VRCPKCNQHFCFDCDIYIHESLHNCPGCESQRSFSS-- D7KEA7/337-416 FPIAPFDEVPALSSLNDNRRKLGK---SCFGCQQSLIGAGNKPGPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- A0A397YHW5/338-417 FPIAPFDEVPTLTSANDPRRKLGK---SCFGCQQSLLGAGNKPGPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- A0A0L9U7F7/338-416 FPIVMFDEVSP--SQNDSSRSFPN---TCFGCQESLLTQGNKPGLS--VICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVT A0A151TTW3/338-417 FPIVMFDEVSP-SSQNDPSFSFSN---TCFGCQQSLNSQGNKPGLS--VICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVT V7CV58/338-417 FPIVMFDEVSP-SSQNDSSRSFSN---TCFGCQQSLFTQGNKPGLS--VICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVT M4EP82/338-417 FPIAPFDEVPTLTSANDPRRKLGK---SCFGCQQSLLGAGNKPGPC--VTCRKCKHYFCLDCDIYIHESLHNCPGCESIHRPKSV- A0A1S3TB99/338-416 FPIVMFDEVSP--SQNDSSRSFPN---TCFGCQESLLSQGNKPGLS--VICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVT C5YBY0/356-430 FPVAPFDEVTP-V-PNRI-QRGGQ---ICFSCQQSLFNPDGQSNLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRNIT--- A0A445HYC3/338-416 FPIVMFDEVTP--SQKDSSRSFPN---TCFGCQQSLLSQGNKPGLS--VICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVT A0A0S3RX30/338-416 FPIVMFDEVSP--SQNDSSRSFPN---TCFGCQESLLTQGNKPGLS--VICPKCKQQFCLDCDIYIHESLHNCPGCESSRHSKSVT A0A0D9W6Z7/372-448 FPVQPFDEVSS-MYSNKLGQKGGQ---KCYGCQQSFINPDSQSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESRRSSS--- J3LZG4/357-433 FPVQPFDEVSS-MHPNKLGQKGGQ---KCYSCQQSFINPDSHSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSSS--- I1PMX0/357-433 FPVQPFDEVSS-VHPNRLGQKGGQ---KCYGCQQSFINPDSQSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSSS--- A0A0D3FXT3/357-433 FPVQPFDEVSS-VHPNRLGQKGGQ---KCYGCQQSFINPDSQSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSSS--- A0A0E0KSM8/356-432 FPVQPFDEVSS-VHPNRLGQKGGQ---KCYGCQQSFINPDSQSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQSSSS--- A0A1D6E6A5/275-350 FPVPPFDEVTP-V-PNRI-QRGGQ---ICFSCQQSLYNPDGQSNLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSIAS-- A0A3L6FPX0/275-350 FPVPPFDEVTP-V-PNRI-QRGGQ---ICFSCQQSLYNPDGQSNLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESQRSIAS-- A0A0D9W6Z6/359-435 FPVQPFDEVSS-MYSNKLGQKGGQ---KCYGCQQSFINPDSQSSLH--VRCPKCNQHFCLDCDIYIHESLHNCPGCESRRSSS--- A0A0Q3IBK3/242-315 FPVAPFDEVTF-----KLGQKGGQ---NCYGCQQSLINSDSQSNLH--VRCPKCNQHFCFDCDIYIHESLHNCPGCESQRSFSS-- I1LHY4/338-416 FPIVMFDEVTP--SQKDSSRSFPN---TCFGCQQSLLSQGNKPGLS--VICPKCKQQFCLDCDIYVHESLHNCPGCESSRHSKSVT #=GC scorecons 98645879843022363224335400049669767534455544640074967956499889978899899899998735343310 #=GC scorecons_70 ***__****___________________*****_*_____________*_*_**_*_*********************________ #=GC scorecons_80 **___****___________________*__**_*_______________*_**___********************_________ #=GC scorecons_90 **___*_**___________________*__*__________________*__*___**_***_*************_________ //