# STOCKHOLM 1.0
#=GF ID 3.10.290.10/FF/000034
#=GF DE RNA-binding protein S4
#=GF AC 3.10.290.10/FF/000034
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 68.275
#=GS Q5LTK6/8-76      AC Q5LTK6
#=GS Q5LTK6/8-76      OS Ruegeria pomeroyi DSS-3
#=GS Q5LTK6/8-76      DE Pseudouridine synthase
#=GS Q5LTK6/8-76      DR ORG; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Ruegeria; Ruegeria pomeroyi; 
#=GS Q5LTK6/8-76      DR GO; GO:0000154; GO:0009982; 
#=GS Q8P6L6/4-57      AC Q8P6L6
#=GS Q8P6L6/4-57      OS Xanthomonas campestris pv. campestris str. ATCC 33913
#=GS Q8P6L6/4-57      DE Pseudouridylate synthase
#=GS Q8P6L6/4-57      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS Q9I4M5/2-52      AC Q9I4M5
#=GS Q9I4M5/2-52      OS Pseudomonas aeruginosa PAO1
#=GS Q9I4M5/2-52      DE Uncharacterized protein
#=GS Q9I4M5/2-52      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A1G5CW65/2-52  AC A0A1G5CW65
#=GS A0A1G5CW65/2-52  OS Acinetobacter baumannii
#=GS A0A1G5CW65/2-52  DE 16S rRNA pseudouridylate 516 synthase
#=GS A0A1G5CW65/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Moraxellaceae; Acinetobacter; Acinetobacter calcoaceticus/baumannii complex; Acinetobacter baumannii; 
#=GS A0A1F0IZ85/2-52  AC A0A1F0IZ85
#=GS A0A1F0IZ85/2-52  OS Pseudomonas sp. HMSC065H01
#=GS A0A1F0IZ85/2-52  DE RNA-binding protein
#=GS A0A1F0IZ85/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC065H01; 
#=GS A0A1S1C4J6/2-52  AC A0A1S1C4J6
#=GS A0A1S1C4J6/2-52  OS Pseudomonas sp. HMSC059F05
#=GS A0A1S1C4J6/2-52  DE RNA-binding protein
#=GS A0A1S1C4J6/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. HMSC059F05; 
#=GS A0A3S5E4Z1/2-52  AC A0A3S5E4Z1
#=GS A0A3S5E4Z1/2-52  OS Pseudomonas fluorescens
#=GS A0A3S5E4Z1/2-52  DE RNA-binding protein S4
#=GS A0A3S5E4Z1/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas fluorescens group; Pseudomonas fluorescens; 
#=GS A0A2V2TDY1/2-52  AC A0A2V2TDY1
#=GS A0A2V2TDY1/2-52  OS Pseudomonas sp. RW410
#=GS A0A2V2TDY1/2-52  DE RNA-binding protein
#=GS A0A2V2TDY1/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas sp. RW410; 
#=GS A0A0H2X5E9/4-57  AC A0A0H2X5E9
#=GS A0A0H2X5E9/4-57  OS Xanthomonas campestris pv. campestris str. 8004
#=GS A0A0H2X5E9/4-57  DE Pseudouridylate synthase
#=GS A0A0H2X5E9/4-57  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS B0RQ12/4-57      AC B0RQ12
#=GS B0RQ12/4-57      OS Xanthomonas campestris pv. campestris str. B100
#=GS B0RQ12/4-57      DE Ribosomal small subunit pseudouridylate synthase
#=GS B0RQ12/4-57      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Xanthomonas; Xanthomonas campestris; 
#=GS A0A3M8R8B7/2-52  AC A0A3M8R8B7
#=GS A0A3M8R8B7/2-52  OS Pseudomonas aeruginosa
#=GS A0A3M8R8B7/2-52  DE RNA-binding protein
#=GS A0A3M8R8B7/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS V6AIV1/2-52      AC V6AIV1
#=GS V6AIV1/2-52      OS Pseudomonas aeruginosa MH27
#=GS V6AIV1/2-52      DE Uncharacterized protein
#=GS V6AIV1/2-52      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS W1MPQ0/2-52      AC W1MPQ0
#=GS W1MPQ0/2-52      OS Pseudomonas aeruginosa VRFPA03
#=GS W1MPQ0/2-52      DE RNA-binding protein S4
#=GS W1MPQ0/2-52      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GS A0A069Q4Q2/2-52  AC A0A069Q4Q2
#=GS A0A069Q4Q2/2-52  OS Pseudomonas aeruginosa
#=GS A0A069Q4Q2/2-52  DE RNA-binding protein
#=GS A0A069Q4Q2/2-52  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas aeruginosa group; Pseudomonas aeruginosa; 
#=GF SQ 14
Q5LTK6/8-76              FVIAAAPPPRLDKALSRDVPETAALSRTRLARLITEGAVSVDGQVVTDPKARVVEGAQVAIALTEAEES
Q8P6L6/4-57              -------PIRLDKHVA----AVFGCSRGEAQQYIEGGWVSVDGVVVEEPQAPIT-GQQVSLA---ADAV
Q9I4M5/2-52              -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A1G5CW65/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A1F0IZ85/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A1S1C4J6/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A3S5E4Z1/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A2V2TDY1/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A0H2X5E9/4-57          -------PIRLDKHVA----AVFGCSRGEAQQYIEGGWVSVDGVVVEEPQAPIT-GQQVSLA---ADAV
B0RQ12/4-57              -------PIRLDKHVA----AVFGCSRGEAQQYIEGGWVSVDGVVVEEPQAPIT-GQQVSLA---ADAV
A0A3M8R8B7/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
V6AIV1/2-52              -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
W1MPQ0/2-52              -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
A0A069Q4Q2/2-52          -----TDPIRLSKRLA----ELTACSRREAELYIEGGWVSVDGEVIEEPQFKVL-DQRVEL--------
#=GC scorecons           000002296995946700005546699466446967959999949767974474066694720002111
#=GC scorecons_70        _______****_*_**_______*_**_**__*****_*****_******__*___***_*________
#=GC scorecons_80        _______*_**_*____________**______*__*_*****_*__***__*_____*_*________
#=GC scorecons_90        _______*_**_*____________**______*__*_*****_*___*_________*__________
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