# STOCKHOLM 1.0
#=GF ID 2.60.40.60/FF/000360
#=GF DE Protocadherin 19
#=GF AC 2.60.40.60/FF/000360
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 75.977
#=GS 5iu9B04/319-431     AC F8W3X3
#=GS 5iu9B04/319-431     OS Danio rerio
#=GS 5iu9B04/319-431     DE Protocadherin 19
#=GS 5iu9B04/319-431     DR CATH; 5iu9; B:318-423; 
#=GS 5iu9B04/319-431     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS Q3TZ28/142-246      AC Q3TZ28
#=GS Q3TZ28/142-246      OS Mus musculus
#=GS Q3TZ28/142-246      DE Uncharacterized protein
#=GS Q3TZ28/142-246      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q3TZ28/142-246      DR GO; GO:0005887; GO:0007155; GO:0007156; 
#=GS B5AK96/50-153       AC B5AK96
#=GS B5AK96/50-153       OS Mus musculus
#=GS B5AK96/50-153       DE Protocadherin alpha 2
#=GS B5AK96/50-153       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS B5AK96/50-153       DR GO; GO:0005634; GO:0005783; 
#=GS B1Q3I6/57-161       AC B1Q3I6
#=GS B1Q3I6/57-161       OS Danio rerio
#=GS B1Q3I6/57-161       DE Protocadherin19 isoform2
#=GS B1Q3I6/57-161       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS B1Q3I6/57-161       DR GO; GO:0001841; GO:0005509; GO:0007601; GO:0016021; GO:0042803; GO:0048854; 
#=GS Q0E9Q8/78-176       AC Q0E9Q8
#=GS Q0E9Q8/78-176       OS Danio rerio
#=GS Q0E9Q8/78-176       DE Protocadherin-17
#=GS Q0E9Q8/78-176       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS Q0E9Q8/78-176       DR GO; GO:0007411; GO:0048675; GO:0060041; GO:0060219; 
#=GS 5iu9A04/319-431     AC F8W3X3
#=GS 5iu9A04/319-431     OS Danio rerio
#=GS 5iu9A04/319-431     DE Protocadherin 19
#=GS 5iu9A04/319-431     DR CATH; 5iu9; A:318-422; 
#=GS 5iu9A04/319-431     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS 5co1D02/106-219     AC F8W3X3
#=GS 5co1D02/106-219     OS Danio rerio
#=GS 5co1D02/106-219     DE Protocadherin 19
#=GS 5co1D02/106-219     DR CATH; 5co1; D:317-422; 
#=GS 5co1D02/106-219     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS 5co1C02/106-219     AC F8W3X3
#=GS 5co1C02/106-219     OS Danio rerio
#=GS 5co1C02/106-219     DE Protocadherin 19
#=GS 5co1C02/106-219     DR CATH; 5co1; C:317-422; 
#=GS 5co1C02/106-219     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS 5co1B02/106-219     AC F8W3X3
#=GS 5co1B02/106-219     OS Danio rerio
#=GS 5co1B02/106-219     DE Protocadherin 19
#=GS 5co1B02/106-219     DR CATH; 5co1; B:317-422; 
#=GS 5co1B02/106-219     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS 5co1A02/106-219     AC F8W3X3
#=GS 5co1A02/106-219     OS Danio rerio
#=GS 5co1A02/106-219     DE Protocadherin 19
#=GS 5co1A02/106-219     DR CATH; 5co1; A:317-423; 
#=GS 5co1A02/106-219     DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A0A151NN16/345-454  AC A0A151NN16
#=GS A0A151NN16/345-454  OS Alligator mississippiensis
#=GS A0A151NN16/345-454  DE Uncharacterized protein
#=GS A0A151NN16/345-454  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Crocodylia; Alligatoridae; Alligatorinae; Alligator; Alligator mississippiensis; 
#=GS A0A2I0T3M3/53-157   AC A0A2I0T3M3
#=GS A0A2I0T3M3/53-157   OS Limosa lapponica baueri
#=GS A0A2I0T3M3/53-157   DE Uncharacterized protein
#=GS A0A2I0T3M3/53-157   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Charadriiformes; Scolopacidae; Limosa; Limosa lapponica; Limosa lapponica baueri; 
#=GS L5KA52/357-466      AC L5KA52
#=GS L5KA52/357-466      OS Pteropus alecto
#=GS L5KA52/357-466      DE Protocadherin-10
#=GS L5KA52/357-466      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Chiroptera; Megachiroptera; Pteropodidae; Pteropodinae; Pteropus; Pteropus alecto; 
#=GS F7CV75/66-182       AC F7CV75
#=GS F7CV75/66-182       OS Ornithorhynchus anatinus
#=GS F7CV75/66-182       DE Uncharacterized protein
#=GS F7CV75/66-182       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GS F7BPY1/126-230      AC F7BPY1
#=GS F7BPY1/126-230      OS Monodelphis domestica
#=GS F7BPY1/126-230      DE Protocadherin 19
#=GS F7BPY1/126-230      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS B1Q3I5/57-161       AC B1Q3I5
#=GS B1Q3I5/57-161       OS Danio rerio
#=GS B1Q3I5/57-161       DE Protocadherin19 isoform1
#=GS B1Q3I5/57-161       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS B1Q3I5/57-161       DR GO; GO:0001841; GO:0005509; GO:0007601; GO:0016021; GO:0042803; GO:0048854; 
#=GF SQ 16
5iu9B04/319-431             -DNAPEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDLEHHHHHH---
Q3TZ28/142-246              ---APE---ISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQCELL---------------GDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDN-------
B5AK96/50-153               -----E---VSITSLSLPVQENAPLGAVIALISVSDRDSGVNGQVTCSLS---------------PHVPFKLVSTFKNYYSLVLDSALDREATADYKVMVTARDGGSPSLRATASVSVEVADVNDNA------
B1Q3I6/57-161               ----PEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDEND--------
Q0E9Q8/78-176               ------------AVRQGAVSEAATPGTVIALVRVTDKDSGRNGQLQCRIL---------------GNVPFKLEENYDNFYTVVTDRPLDREVKDEYNITIVAKDNGNPPLNSTKSFTVKILDENDN-------
5iu9A04/319-431             -DNAPEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDLEHHHHHH---
5co1D02/106-219             NDNAPEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDLEHHHHHH---
5co1C02/106-219             NDNAPEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDLEHHHHHH---
5co1B02/106-219             NDNAPEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDLEHHHHHH---
5co1A02/106-219             NDNAPEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDLEHHHHHH---
A0A151NN16/345-454          -------NLLSVNSELVEVSENAPPGYVIALVRVSDRDSGANGRVQCKLL---------------GNVPFRLQE-YESFSTILVDGRLDREQRDQYNLTIQAKDNGIPSLQATKSFTVKITDENDNHPHFSKP
A0A2I0T3M3/53-157           -------NLLSVNSELVEVSENAPPGYVIALVRVSDRDSGANGRVQCKLL---------------GNVPFRLQE-YESFSTILVDGRLDREQRDQYNLTIQAKDNGIPSLQATKSFTVKITDENDNHP-----
L5KA52/357-466              -----E---ISFSTVKEAVSEGAAPGTVVALFSVTDRDSEENGQVQCELL---------------GDVPFRLKSSFKNYYTIVTEAPLDREAGDSYTLTVVARDRGEPALSTSKSIQVQVSDVNDNAPRFSQP
F7CV75/66-182               ------------SVRQGALSEAAPPGTVIALVRVTDRDSGRNGQLQCRVLGGGGGGGPGGPGGGSGGVPFKLEENYDNFYTVVTDRPLDREAQDEYNVTIVARDGGSPPLNSTKSFAVKILDENDNPPR----
F7BPY1/126-230              ----PVINLLSVNSELVEVSESAPPGYVIALVRVSDRDSGANGRVQCRLL---------------GNVPFRLQE-YESFSTILVDGRLDREQRDQYNLTIQARDGGVPSLQSTKSFTVKITDEND--------
B1Q3I5/57-161               ----PEIKLLSENSEMVEVSENAPLGYVIALVRVSDNDSGANGKVQCRLQ---------------GNVPFRLNE-FESFSTLLVDGRLDREQRDMYNLTILAEDSGYPPLRSSKSFAVKVTDEND--------
#=GC scorecons              0001231124525543458795965949799669695997499577957400000000000000075999794607567585657559999557396677495949395945679649675946642111000
#=GC scorecons_70           __________________***_**_*_*****_***_***_**_***_*________________*_*****___*__*_*_*_*__****__*_*****_*_*_*_*_*___***_***_*_**________
#=GC scorecons_80           __________________***_*__*_****__*_*_***_**_***_*________________*_*****___*__*_*___*__****__*_*__**_*_*_*_*_*___**__*_*_*___________
#=GC scorecons_90           ____________________*_*__*_*_**__*_*_**__**___*____________________***_*_______________****____*_____*_*_*_*_*____*__*___*___________
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