# STOCKHOLM 1.0
#=GF ID 2.60.40.10/FF/001825
#=GF DE T cell receptor alpha variable 12D-1
#=GF AC 2.60.40.10/FF/001825
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 62.716
#=GS 1nfdC01/1-112      AC P01849
#=GS 1nfdC01/1-112      OS Mus musculus
#=GS 1nfdC01/1-112      DE T-cell receptor alpha chain C region
#=GS 1nfdC01/1-112      DR CATH; 1nfd; C:1-116; 
#=GS 1nfdC01/1-112      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS 1nfdA01/1-112      AC P01849
#=GS 1nfdA01/1-112      OS Mus musculus
#=GS 1nfdA01/1-112      DE T-cell receptor alpha chain C region
#=GS 1nfdA01/1-112      DR CATH; 1nfd; A:1-116; 
#=GS 1nfdA01/1-112      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q5R1G3/14-115      AC Q5R1G3
#=GS Q5R1G3/14-115      OS Mus musculus
#=GS Q5R1G3/14-115      DE TRAV12D-3
#=GS Q5R1G3/14-115      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A075B6A4/14-115  AC A0A075B6A4
#=GS A0A075B6A4/14-115  OS Mus musculus
#=GS A0A075B6A4/14-115  DE T cell receptor alpha variable 12D-3
#=GS A0A075B6A4/14-115  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A075B648/22-115  AC A0A075B648
#=GS A0A075B648/22-115  OS Mus musculus
#=GS A0A075B648/22-115  DE T cell receptor alpha variable 12-3
#=GS A0A075B648/22-115  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A075B626/22-113  AC A0A075B626
#=GS A0A075B626/22-113  OS Mus musculus
#=GS A0A075B626/22-113  DE T cell receptor alpha variable 12D-2
#=GS A0A075B626/22-113  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A0G2JF09/21-112  AC A0A0G2JF09
#=GS A0A0G2JF09/21-112  OS Mus musculus
#=GS A0A0G2JF09/21-112  DE T cell receptor alpha variable 12D-2
#=GS A0A0G2JF09/21-112  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q5R1G5/23-114      AC Q5R1G5
#=GS Q5R1G5/23-114      OS Mus musculus
#=GS Q5R1G5/23-114      DE TRAV12D-2
#=GS Q5R1G5/23-114      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0N8N6/23-114      AC A0N8N6
#=GS A0N8N6/23-114      OS Mus musculus
#=GS A0N8N6/23-114      DE T cell receptor alpha variable 12-2
#=GS A0N8N6/23-114      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0N8R0/16-115      AC A0N8R0
#=GS A0N8R0/16-115      OS Mus musculus
#=GS A0N8R0/16-115      DE T cell receptor alpha variable 12D-1
#=GS A0N8R0/16-115      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0N8R1/16-115      AC A0N8R1
#=GS A0N8R1/16-115      OS Mus musculus
#=GS A0N8R1/16-115      DE T cell receptor alpha variable 12-1
#=GS A0N8R1/16-115      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS Q5R1D5/14-113      AC Q5R1D5
#=GS Q5R1D5/14-113      OS Mus musculus
#=GS Q5R1D5/14-113      DE TRAV12-1
#=GS Q5R1D5/14-113      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A075B643/22-114  AC A0A075B643
#=GS A0A075B643/22-114  OS Mus musculus
#=GS A0A075B643/22-114  DE T cell receptor alpha variable 12-1
#=GS A0A075B643/22-114  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A075B605/21-114  AC A0A075B605
#=GS A0A075B605/21-114  OS Mus musculus
#=GS A0A075B605/21-114  DE T cell receptor alpha variable 12D-1
#=GS A0A075B605/21-114  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A0A0G2K438/1-92    AC A0A0G2K438
#=GS A0A0G2K438/1-92    OS Rattus norvegicus
#=GS A0A0G2K438/1-92    DE Uncharacterized protein
#=GS A0A0G2K438/1-92    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS M0R4E3/14-133      AC M0R4E3
#=GS M0R4E3/14-133      OS Rattus norvegicus
#=GS M0R4E3/14-133      DE Uncharacterized protein
#=GS M0R4E3/14-133      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS M0RCP3/13-114      AC M0RCP3
#=GS M0RCP3/13-114      OS Rattus norvegicus
#=GS M0RCP3/13-114      DE Uncharacterized protein
#=GS M0RCP3/13-114      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS M0R6J8/22-114      AC M0R6J8
#=GS M0R6J8/22-114      OS Rattus norvegicus
#=GS M0R6J8/22-114      DE Uncharacterized protein
#=GS M0R6J8/22-114      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS M0R550/22-114      AC M0R550
#=GS M0R550/22-114      OS Rattus norvegicus
#=GS M0R550/22-114      DE Uncharacterized protein
#=GS M0R550/22-114      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS M0RBE3/15-109      AC M0RBE3
#=GS M0RBE3/15-109      OS Rattus norvegicus
#=GS M0RBE3/15-109      DE Uncharacterized protein
#=GS M0RBE3/15-109      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS A0A0G2K015/1-92    AC A0A0G2K015
#=GS A0A0G2K015/1-92    OS Rattus norvegicus
#=GS A0A0G2K015/1-92    DE Uncharacterized protein
#=GS A0A0G2K015/1-92    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS A0A0G2K2P2/1-92    AC A0A0G2K2P2
#=GS A0A0G2K2P2/1-92    OS Rattus norvegicus
#=GS A0A0G2K2P2/1-92    DE Uncharacterized protein
#=GS A0A0G2K2P2/1-92    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS A0A0G2K766/1-92    AC A0A0G2K766
#=GS A0A0G2K766/1-92    OS Rattus norvegicus
#=GS A0A0G2K766/1-92    DE Uncharacterized protein
#=GS A0A0G2K766/1-92    DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GF SQ 23
1nfdC01/1-112              ------------DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALSEGGNYKYVFGAGT---RLKVIA
1nfdA01/1-112              ------------DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALSEGGNYKYVFGAGT---RLKVIA
Q5R1G3/14-115              -ML--RRSNGDGDSVTQTEGLVTLTEGLPVMLNCTYQTIYSNAFLFWYVHYLNESPWLLLRSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALS----------------------
A0A075B6A4/14-115          -ML--RRSNGDGDSVTQTEGLVTLTEGLPVMLNCTYQTIYSNPFLFWYVQHLNESPRLLLKSFTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALS----------------------
A0A075B648/22-115          -----------GDSVTQKEGLVTLTEGLPVMLNCTYQTIYSNAFLFWYVHYLNESPRLLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALS----------------------
A0A075B626/22-113          ------------DSVTQTEGLVTLTKGLPVMLNCTYQTTYS-PFLFWYVQHLNEAPKLLLKSSTDNKRTEHQGFYATLHKSSSSFHLQKSSVQLSDSALYFCALS----------------------
A0A0G2JF09/21-112          ------------DSVTQTEGLVTLTKGLPVMLNCTYQTTYS-PFLFWYVQHLNEAPKLLLKSSTDNKRTEHQGFYATLHKSSSSFHLQKSSVQLSDSALYFCALS----------------------
Q5R1G5/23-114              ------------DSVTQTEGLVTLTKGLPVMLNCTYQTTYS-PFLFWYVQHLNEAPKLLLKSSTDNKRTEHQGFYATLHKSSSSFHLQKSSVQLSDSALYFCALS----------------------
A0N8N6/23-114              ------------DSVTQTEGLVTLTEGLPVMLNCTYQSTYS-PFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALS----------------------
A0N8R0/16-115              -ML--RRSN--GDSVTQTEGLVTVTEGLPVMLNCTYQTAYSDVAFFWYVQYLNEAPKLLLRSSTDNKRTEHQGFHATLHKSSSSFHLQKSSVQLSDSALYYCALS----------------------
A0N8R1/16-115              -ML--RRSN--GDSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALS----------------------
Q5R1D5/14-113              -ML--RRSN--GDSVTQTEGLVTLTEGLPVKLNCTYQTAYSDVAFFWYVQHLNEAPKLLLRSSTDNKRTEHQGFHATLHKSSSSFHLQKSSVQLSDSALYFCALS----------------------
A0A075B643/22-114          ------------DSVTQTEGLVTVTEGLPVKLNCTYQTTYLTIAFFWYVQYLNEAPQVLLKSSTDNKRTEHQGFHATLHKSSSSFHLQKSSAQLSDSALYYCALS----------------------
A0A075B605/21-114          -----------GDSVTQTEGLVTVTEGLPVMLNCTYQTAYSDVAFFWYVQYLNEAPKLLLRSSTDNKRTEHQGFHATLHKSSSSFHLQKSSVQLSDSALYYCALS----------------------
A0A0G2K438/1-92            -----------GDSVTQTEGLVLVTEGSHVVLNCTYQTTYSNPSVFWYVQYLNEAPRLLLRSSTDNKRTEHEGFHAALHKSSRSFRLQKPSAQLSDSALYYCA------------------------
M0R4E3/14-133              -IL--RRSN--GDSVTQTEGRVLVTEGSHVVLNCTYQTTYSNPSVFWYVQYLNEAPRILLWSFTDNKRTEHEGFHAALHKNNRSFHLQKPSAQLSDSALYYCALSD--TVRETAGEAAHEPRVQECW
M0RCP3/13-114              LILNKRRSN--GDSVTQTEGLVLVTEGSHVVLNCTYQTTYSNPSVFWYVQYLNEAPRILLWSFTDNKRTEHEGFHAALHKSNSSFRLQKPSAQLSDSALYYCAL-----------------------
M0R6J8/22-114              -----------GDSVTQTEGLVTLTEGSPVMLNCTYQTTYSAPTLFWYVQYLSEAPRLLLRSSTDNKRTEHEGFHAALHKSSRSFRLQKPSAQLSDSALYYCAV-----------------------
M0R550/22-114              -----------GDSVTQTEGLVTLTEGSPVMLNCTYQTTYSAPTLFWYVQYLSEAPRLLLRSSTDSKRTEHAGFHAALHKSSRSFRLQKPSAQLSDSALYYCAV-----------------------
M0RBE3/15-109              LML--RRSN--GDSVTQTEGLVTLTEGSPVMLNCTYQTTYSAPTLFWYVQYLSEAPRLLLRSSTDSKRTEHAGFHAALHKSSRSFRLQKPSAQLSDSAL----------------------------
A0A0G2K015/1-92            -----------GDSVTQTEGLVSLTEGSPVVLNCTYQTTYSASTLFWYVQYLSEAPRLLLRSSTDSKRTEHEGFHATLHKSSRSFRLQKPSAQLSDSALYYCA------------------------
A0A0G2K2P2/1-92            -----------GDSMTQTEGLVTLTEQSPVMLTCTYQTTYSTVTLFWYVQYLNEAPRLLLRSSTDSKRTEHEGFHAALHKSSRSFRLQKPSAQLSDSALYYCA------------------------
A0A0G2K766/1-92            -----------GDSMTQTEGLVTLTEQSPVMLTCTYQTTYSTVTLFWYVQYLNEAPRLLLRSSTDNKRIEHEGFHAALHKSSRSFRLQKPSAQLSDSALYYCA------------------------
#=GC scorecons             0010011110049989989979669775794989999869634459999879797956995969979989959989699987599699969799999998788430000000000000000000000
#=GC scorecons_70          ____________***************_**_**********____***********_***_**********_**********_******_*************________________________
#=GC scorecons_80          ____________**********__***_**_*******_*_____***********__**_*_********_****_*****_**_***_*_***********________________________
#=GC scorecons_90          ____________********_*__*____*_*******_*_____*****_*_*_*__**_*_**_*****_****_****__**_***_*_*******____________________________
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