# STOCKHOLM 1.0 #=GF ID 2.40.50.140/FF/000336 #=GF DE Membrane-bound serine protease #=GF AC 2.40.50.140/FF/000336 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 93.068 #=GS 3wwvA00/1-80 AC O59179 #=GS 3wwvA00/1-80 OS Pyrococcus horikoshii OT3 #=GS 3wwvA00/1-80 DE Membrane-bound protease PH1510 #=GS 3wwvA00/1-80 DR CATH; 3wwv; A:373-436; #=GS 3wwvA00/1-80 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Pyrococcus; Pyrococcus horikoshii; #=GS Q8TS89/368-433 AC Q8TS89 #=GS Q8TS89/368-433 OS Methanosarcina acetivorans C2A #=GS Q8TS89/368-433 DE Nodulation protein NfeD #=GS Q8TS89/368-433 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina acetivorans; #=GS Q8ZYJ1/368-427 AC Q8ZYJ1 #=GS Q8ZYJ1/368-427 OS Pyrobaculum aerophilum str. IM2 #=GS Q8ZYJ1/368-427 DE Conserved protein (NfeD homolog) #=GS Q8ZYJ1/368-427 DR ORG; Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum; Pyrobaculum aerophilum; #=GS B1L3Q6/369-425 AC B1L3Q6 #=GS B1L3Q6/369-425 OS Candidatus Korarchaeum cryptofilum OPF8 #=GS B1L3Q6/369-425 DE Short-chain alcohol dehydrogenase #=GS B1L3Q6/369-425 DR ORG; Archaea; Candidatus Korarchaeota; Candidatus Korarchaeum; Candidatus Korarchaeum cryptofilum; #=GS Q5JG17/378-447 AC Q5JG17 #=GS Q5JG17/378-447 OS Thermococcus kodakarensis KOD1 #=GS Q5JG17/378-447 DE Predicted membrane-bound serine protease, NfeD homolog #=GS Q5JG17/378-447 DR ORG; Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus; Thermococcus kodakarensis; #=GS A9WGU8/392-460 AC A9WGU8 #=GS A9WGU8/392-460 OS Chloroflexus aurantiacus J-10-fl #=GS A9WGU8/392-460 DE Uncharacterized protein #=GS A9WGU8/392-460 DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus aurantiacus; #=GS B5YJM0/372-436 AC B5YJM0 #=GS B5YJM0/372-436 OS Thermodesulfovibrio yellowstonii DSM 11347 #=GS B5YJM0/372-436 DE Membrane-bound serine protease #=GS B5YJM0/372-436 DR ORG; Bacteria; Nitrospirae; Nitrospira; Nitrospirales; Nitrospiraceae; Thermodesulfovibrio; Thermodesulfovibrio yellowstonii; #=GS O67682/362-425 AC O67682 #=GS O67682/362-425 OS Aquifex aeolicus VF5 #=GS O67682/362-425 DE Nodulation competitiveness protein NfeD #=GS O67682/362-425 DR ORG; Bacteria; Aquificae; Aquificae; Aquificales; Aquificaceae; Aquifex; Aquifex aeolicus; #=GS Q74AE5/377-440 AC Q74AE5 #=GS Q74AE5/377-440 OS Geobacter sulfurreducens PCA #=GS Q74AE5/377-440 DE Membrane-bound serine protease NfeD, long form #=GS Q74AE5/377-440 DR ORG; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geobacter; Geobacter sulfurreducens; #=GS B8DZW5/360-423 AC B8DZW5 #=GS B8DZW5/360-423 OS Dictyoglomus turgidum DSM 6724 #=GS B8DZW5/360-423 DE Uncharacterized protein #=GS B8DZW5/360-423 DR ORG; Bacteria; Dictyoglomi; Dictyoglomia; Dictyoglomales; Dictyoglomaceae; Dictyoglomus; Dictyoglomus turgidum; #=GS P54465/378-437 AC P54465 #=GS P54465/378-437 OS Bacillus subtilis subsp. subtilis str. 168 #=GS P54465/378-437 DE Uncharacterized protein YqeZ #=GS P54465/378-437 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; #=GS A0A3M1W1C4/392-460 AC A0A3M1W1C4 #=GS A0A3M1W1C4/392-460 OS Chloroflexi bacterium #=GS A0A3M1W1C4/392-460 DE Nodulation protein NfeD #=GS A0A3M1W1C4/392-460 DR ORG; Bacteria; Chloroflexi; Chloroflexi bacterium; #=GS A0A2X1VZW3/378-437 AC A0A2X1VZW3 #=GS A0A2X1VZW3/378-437 OS Paenibacillus polymyxa #=GS A0A2X1VZW3/378-437 DE Membrane-bound serine protease #=GS A0A2X1VZW3/378-437 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus; Paenibacillus polymyxa; #=GS A0A0F8BZB1/368-433 AC A0A0F8BZB1 #=GS A0A0F8BZB1/368-433 OS Methanosarcina sp. 2.H.A.1B.4 #=GS A0A0F8BZB1/368-433 DE Nodulation protein NfeD #=GS A0A0F8BZB1/368-433 DR ORG; Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanosarcina; Methanosarcina sp. 2.H.A.1B.4; #=GS A0A178MJX6/364-431 AC A0A178MJX6 #=GS A0A178MJX6/364-431 OS Chloroflexus islandicus #=GS A0A178MJX6/364-431 DE Serine protease #=GS A0A178MJX6/364-431 DR ORG; Bacteria; Chloroflexi; Chloroflexia; Chloroflexales; Chloroflexineae; Chloroflexaceae; Chloroflexus; Chloroflexus islandicus; #=GS A0A164X4Z3/378-437 AC A0A164X4Z3 #=GS A0A164X4Z3/378-437 OS Bacillus subtilis #=GS A0A164X4Z3/378-437 DE Uncharacterized protein #=GS A0A164X4Z3/378-437 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; #=GS G4ETN1/378-437 AC G4ETN1 #=GS G4ETN1/378-437 OS Bacillus subtilis subsp. subtilis str. SC-8 #=GS G4ETN1/378-437 DE Uncharacterized protein #=GS G4ETN1/378-437 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; Bacillus subtilis subsp. subtilis; #=GS L8ANB5/378-437 AC L8ANB5 #=GS L8ANB5/378-437 OS Bacillus subtilis BEST7613 #=GS L8ANB5/378-437 DE Membrane bound hydrolase #=GS L8ANB5/378-437 DR ORG; Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus; Bacillus subtilis group; Bacillus subtilis; #=GF SQ 18 3wwvA00/1-80 -MKARTGKEEMIGLIGTVVEEL-NPE--GMIKVRGELWKARSKFNGKIEKGEKVRVVDMDGLTLIVVRERKEGGEKLEHHHHHH Q8TS89/368-433 TRKKKPVIGAIIGDTARTIDPI-GPKNPGFVRYKGEYWQAKAE--EEIGAEEEVEITGKEMEVLVVKRK--------------- Q8ZYJ1/368-427 -------LTSLKGVEGVAIDDI-GPESPGFVKVFGEYWRAVSD--TPVRKGCRIRVVETIGDMLKVEPLQ-------------- B1L3Q6/369-425 ----------LPTGKGVAVDDI-GPGGTGYVRISGELWRATSN--EEIRSGDAVEVVDRKDNLLVVRKAS-------------- Q5JG17/378-447 -RRPETGKEEMIGAVGKVVEDL-DPE--GLIKVRGELWKAVSKDGSLIKVGEKVRVVGMDGLTLIVEKVDEKEV---------- A9WGU8/392-460 --PVTTGQEGLIGRLAEVRKRL-DPE--GMVFVEGALWRAVCE-NGTAEEGEFVRVTGIYALRLTVRRIDTGESS--------- B5YJM0/372-436 -RKPVTGVEELIGLKGIAKTDIDRHR--GMVMVHGELWQAVSD--EEIKKDEEIIVEEVKGLTLKVRRAN-------------- O67682/362-425 --KKLTGIEGMIGEEGEAIVDFKNGR--GKVFVHGEIWDAVSE--DDIKKGDTVKVVGAKGLKLIVKKSS-------------- Q74AE5/377-440 -RKPTTGGEGLVGETGKALSPI-APE--GRVFIHGEYWDAWSD--EPLAEGDRVMVVAVDGMRVKVKKLS-------------- B8DZW5/360-423 ---AVQERKDLIGKKGKTITML-RPT--GIIEIDGERFEAYSE-SEFIEPGEEVLVFKVEGNKIFVRRSEK------------- P54465/378-437 -----QTRTDLMGKVGITFTPL-RPS--GTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEGSRIVVREI--------------- A0A3M1W1C4/392-460 --PVTTGQEGLIGRLAEVRKRL-DPE--GMVFVEGALWRAVCE-NGTAEEGEFVRVTGIYALRLTVRRIDTGESS--------- A0A2X1VZW3/378-437 -----QTRTDLMGKVGITFTPL-RPS--GTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEGSRIVVREI--------------- A0A0F8BZB1/368-433 TRKKKPVIGAIIGDTARTIDPI-GPKSPGFVRYKGEYWKARSE--EEIGAEEEVEIIGKEMEVLLVKRK--------------- A0A178MJX6/364-431 --PVTTGQEGLIGRLAEVRKRL-DPE--GMVFVEGALWRAVCE-NGTAEEGEFVRVTGIYALRLTVRRLEPSEL---------- A0A164X4Z3/378-437 -----QTRTDLMGKVGITFTPL-RPS--GTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEGSRIVVREI--------------- G4ETN1/378-437 -----QTRTDLMGKVGITFTPL-RPS--GTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEGSRIVVREI--------------- L8ANB5/378-437 -----QTRTDLMGKVGITFTPL-RPS--GTVIIDDERLDVVSE-GSFTEKDKKVKVIKVEGSRIVVREI--------------- #=GC scorecons 001113334465833635333604740093735367354646601425545538484444534649553100000000000000 #=GC scorecons_70 __________*_*__*________*___*_*___**___*_**__________*_*_______*_*__________________ #=GC scorecons_80 ____________*___________*___*_*______________________*_*_________*__________________ #=GC scorecons_90 ____________*_______________*________________________*_*_________*__________________ //