The name of this superfamily has been modified since the most recent official CATH+ release (v4_3_0). At the point of the last release, this superfamily was named:
"LytTr DNA-binding domain
".
FunFam 2: DNA-binding response regulator AlgR
Please note: GO annotations are assigned to the full protein sequence rather than individual protein domains. Since a given protein can contain multiple domains, it is possible that some of the annotations below come from additional domains that occur in the same protein, but have been classified elsewhere in CATH.
There are 11 GO terms relating to "molecular function"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
|
12 |
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
(2 more) |
|
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Transcription regulatory region sequence-specific DNA binding GO:0000976
Interacting selectively and non-covalently with a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
|
12 |
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
(2 more) |
|
DNA-binding transcription activator activity GO:0001216
Interacting selectively and non-covalently with a specific DNA sequence in order to activate or increase the frequency, rate or extent of transcription by a RNA polymerase.
|
12 |
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
(2 more) |
|
DNA-binding transcription activator activity GO:0001216
Interacting selectively and non-covalently with a specific DNA sequence in order to activate or increase the frequency, rate or extent of transcription by a RNA polymerase.
|
12 |
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
(2 more) |
|
DNA-binding transcription repressor activity GO:0001217
Interacting selectively and non-covalently with a specific DNA sequence in order to stop, prevent, or reduce the frequency, rate or extent of transcription by a RNA polymerase.
|
12 |
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
(2 more) |
|
DNA-binding transcription repressor activity GO:0001217
Interacting selectively and non-covalently with a specific DNA sequence in order to stop, prevent, or reduce the frequency, rate or extent of transcription by a RNA polymerase.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
12 |
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
(2 more) |
|
Sequence-specific DNA binding GO:0043565
Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
|
12 |
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
(2 more) |
|
Phosphorelay response regulator activity GO:0000156
Responds to a phosphorelay sensor to initiate a change in cell state or activity. The activity of the response regulator is regulated by transfer of a phosphate from a histidine residue in the sensor, to an aspartate residue in the response regulator. Many but not all response regulators act as transcriptional regulators to elicit a response.
|
10 | Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) |
|
DNA-binding transcription factor activity GO:0003700
A protein or a member of a complex that interacts selectively and non-covalently with a specific DNA sequence (sometimes referred to as a motif) within the regulatory region of a gene to modulate transcription. Regulatory regions include promoters (proximal and distal) and enhancers. Genes are transcriptional units, and include bacterial operons.
|
10 | Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) |
There are 11 GO terms relating to "biological process"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
12 |
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
(2 more) |
|
Type IV pilus-dependent motility GO:0043107
Any process involved in the controlled movement of a bacterial cell which is dependent on the presence of type IV pili. Includes social gliding motility and twitching motility.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
12 |
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
(2 more) |
|
Negative regulation of transcription, DNA-templated GO:0045892
Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
|
12 |
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
P26275 (/IEP)
(2 more) |
|
Positive regulation of transcription, DNA-templated GO:0045893
Any process that activates or increases the frequency, rate or extent of cellular DNA-templated transcription.
|
12 |
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
P26275 (/EXP)
(2 more) |
|
Bacterial-type flagellum-dependent swarming motility GO:0071978
Bacterial-type flagellum-dependent cell motility in which the action of numerous flagella results in the smooth movement of a group of cells along a solid surface. Swarming motility is observed in groups of bacteria.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Positive regulation of single-species biofilm formation GO:1900192
Any process that activates or increases the frequency, rate or extent of single-species biofilm formation.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Regulation of response to reactive oxygen species GO:1901031
Any process that modulates the frequency, rate or extent of response to reactive oxygen species.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Positive regulation of cell motility GO:2000147
Any process that activates or increases the frequency, rate or extent of cell motility.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Phosphorelay signal transduction system GO:0000160
A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
|
10 | Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) |
|
Regulation of transcription, DNA-templated GO:0006355
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
|
10 | Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) Q88B92 (/ISS) |
There are 3 GO terms relating to "cellular component"
The search results have been sorted with the annotations that are found most frequently at the top of the
list. The results can be filtered by typing text into the search box at the top of the table.
| GO Term | Annotations | Evidence |
|---|---|---|
|
Protein-DNA complex GO:0032993
A macromolecular complex containing both protein and DNA molecules.
|
12 |
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
P26275 (/IDA)
(2 more) |
|
Protein-DNA complex GO:0032993
A macromolecular complex containing both protein and DNA molecules.
|
12 |
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
P26275 (/IMP)
(2 more) |
|
Protein-DNA complex GO:0032993
A macromolecular complex containing both protein and DNA molecules.
|
12 |
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
P26275 (/IPI)
(2 more) |