# STOCKHOLM 1.0 #=GF ID 2.40.30.330/FF/000003 #=GF DE mRNA cleavage and polyadenylation factor CLP1 #=GF AC 2.40.30.330/FF/000003 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 47.450 #=GS 4oi4C03/351-453 AC Q08685 #=GS 4oi4C03/351-453 OS Saccharomyces cerevisiae S288C #=GS 4oi4C03/351-453 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 4oi4C03/351-453 DR CATH; 4oi4; C:343-445; #=GS 4oi4C03/351-453 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4oi4C03/351-453 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 4oi4A03/351-453 AC Q08685 #=GS 4oi4A03/351-453 OS Saccharomyces cerevisiae S288C #=GS 4oi4A03/351-453 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 4oi4A03/351-453 DR CATH; 4oi4; A:343-445; #=GS 4oi4A03/351-453 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4oi4A03/351-453 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 4c0hB03/343-445 AC Q08685 #=GS 4c0hB03/343-445 OS Saccharomyces cerevisiae S288C #=GS 4c0hB03/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 4c0hB03/343-445 DR CATH; 4c0h; B:343-445; #=GS 4c0hB03/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4c0hB03/343-445 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 4c0hA03/343-445 AC Q08685 #=GS 4c0hA03/343-445 OS Saccharomyces cerevisiae S288C #=GS 4c0hA03/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 4c0hA03/343-445 DR CATH; 4c0h; A:343-445; #=GS 4c0hA03/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4c0hA03/343-445 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 4c0bB03/343-446 AC Q08685 #=GS 4c0bB03/343-446 OS Saccharomyces cerevisiae S288C #=GS 4c0bB03/343-446 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 4c0bB03/343-446 DR CATH; 4c0b; B:343-446; #=GS 4c0bB03/343-446 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4c0bB03/343-446 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 4c0bA03/343-446 AC Q08685 #=GS 4c0bA03/343-446 OS Saccharomyces cerevisiae S288C #=GS 4c0bA03/343-446 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 4c0bA03/343-446 DR CATH; 4c0b; A:343-445; #=GS 4c0bA03/343-446 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 4c0bA03/343-446 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 2npiB03/358-460 AC Q08685 #=GS 2npiB03/358-460 OS Saccharomyces cerevisiae S288C #=GS 2npiB03/358-460 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 2npiB03/358-460 DR CATH; 2npi; B:343-445; #=GS 2npiB03/358-460 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 2npiB03/358-460 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS 2npiA03/358-460 AC Q08685 #=GS 2npiA03/358-460 OS Saccharomyces cerevisiae S288C #=GS 2npiA03/358-460 DE mRNA cleavage and polyadenylation factor CLP1 #=GS 2npiA03/358-460 DR CATH; 2npi; A:343-445; #=GS 2npiA03/358-460 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS 2npiA03/358-460 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS Q08685/343-445 AC Q08685 #=GS Q08685/343-445 OS Saccharomyces cerevisiae S288C #=GS Q08685/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS Q08685/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS Q08685/343-445 DR GO; GO:0005515; GO:0005849; GO:0006378; GO:0031124; GO:0090202; GO:0098789; #=GS Q75F23/338-445 AC Q75F23 #=GS Q75F23/338-445 OS Eremothecium gossypii ATCC 10895 #=GS Q75F23/338-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS Q75F23/338-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Eremothecium; Eremothecium gossypii; #=GS J8TXA3/343-445 AC J8TXA3 #=GS J8TXA3/343-445 OS Saccharomyces kudriavzevii IFO 1802 #=GS J8TXA3/343-445 DE mRNA cleavage and polyadenylation factor YOR250C #=GS J8TXA3/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces kudriavzevii; #=GS H0H1E6/343-445 AC H0H1E6 #=GS H0H1E6/343-445 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0H1E6/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS H0H1E6/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS A0A0L8VGZ7/343-445 AC A0A0L8VGZ7 #=GS A0A0L8VGZ7/343-445 OS Saccharomyces sp. 'boulardii' #=GS A0A0L8VGZ7/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS A0A0L8VGZ7/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces sp. 'boulardii'; #=GS A0A0L8RBH4/343-445 AC A0A0L8RBH4 #=GS A0A0L8RBH4/343-445 OS Saccharomyces eubayanus #=GS A0A0L8RBH4/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS A0A0L8RBH4/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces eubayanus; #=GS C7GWD9/343-445 AC C7GWD9 #=GS C7GWD9/343-445 OS Saccharomyces cerevisiae JAY291 #=GS C7GWD9/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS C7GWD9/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS A6ZP88/343-445 AC A6ZP88 #=GS A6ZP88/343-445 OS Saccharomyces cerevisiae YJM789 #=GS A6ZP88/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS A6ZP88/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS N1NWV2/343-445 AC N1NWV2 #=GS N1NWV2/343-445 OS Saccharomyces cerevisiae CEN.PK113-7D #=GS N1NWV2/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS N1NWV2/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS G2WNB8/343-445 AC G2WNB8 #=GS G2WNB8/343-445 OS Saccharomyces cerevisiae Kyokai no. 7 #=GS G2WNB8/343-445 DE mRNA cleavage and polyadenylation factor K7_CLP1 #=GS G2WNB8/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS B3LJR8/343-445 AC B3LJR8 #=GS B3LJR8/343-445 OS Saccharomyces cerevisiae RM11-1a #=GS B3LJR8/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS B3LJR8/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GS H0GNV9/343-445 AC H0GNV9 #=GS H0GNV9/343-445 OS Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7 #=GS H0GNV9/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS H0GNV9/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae x Saccharomyces kudriavzevii; #=GS C8ZH02/343-445 AC C8ZH02 #=GS C8ZH02/343-445 OS Saccharomyces cerevisiae EC1118 #=GS C8ZH02/343-445 DE mRNA cleavage and polyadenylation factor CLP1 #=GS C8ZH02/343-445 DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae; #=GF SQ 21 4oi4C03/351-453 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- 4oi4A03/351-453 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- 4c0hB03/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- 4c0hA03/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- 4c0bB03/343-446 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLEQ 4c0bA03/343-446 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLEQ 2npiB03/358-460 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAXILTSYRYLE- 2npiA03/358-460 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAXILTSYRYLE- Q08685/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- Q75F23/338-445 PYTIGVDLLDAVVWRPKSSLTIDMSKTSPNMVELERVEVTAANLQHALVAITYAPRKSTAEEVFRSGVLGVALITEVNDAKRKMRILLPVPGRLPDKAMILTAYRYLE- J8TXA3/343-445 PYAIGVDYEDVTIWKPSNVFENEVSK-----AELFPVTISPSNLQHAVIAITFAERRADQTTVIKSPILGFALITEVNEKRRKLRILLPVPGRLPSKAMILTSFRYLE- H0H1E6/343-445 PYAIGVDYEDVTIWKPSNVFENEVSK-----AELFPVTISPSNLQHAVIAITFAERRADQTTVIKSPILGFALITEVNEKRRKLRILLPVPGRLPSKAMILTSFRYLE- A0A0L8VGZ7/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- A0A0L8RBH4/343-445 PYAIGVDYEDVTIWKPSNVFDNEVGK-----VQLFPVTITPSNLQHAVVAITFAERRADQAAVIKSPILGFALITEVNEKRRKLRILLPVPGRLPNKAMVLTSYRYLE- C7GWD9/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- A6ZP88/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- N1NWV2/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- G2WNB8/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSSILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- B3LJR8/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSPILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- H0GNV9/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSXILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- C8ZH02/343-445 PYAIGVDYEDLTIWKPSNVFDNEVGR-----VELFPVTITPSNLQHAIIAITFAERRADQATVIKSSILGFALITEVNEKRRKLRVLLPVPGRLPSKAMILTSYRYLE- #=GC scorecons 9969999549467979565655765600000789459577669999957999795976554596794799699999997579969699999999959978996899990 #=GC scorecons_70 *******__*__****_*_*__**_*_____***__*_*********_******_***____*_**_***_********_***************_************_ #=GC scorecons_80 **_****__*__****______*________***__*_**__*****__*****_**_____*_**_***_********_***_*_*********_******_*****_ #=GC scorecons_90 **_****__*___*_*________________**__*_____*****__***_*_*______*__*__**_*******___**_*_*********_**_***_*****_ //