# STOCKHOLM 1.0
#=GF ID 2.30.29.30/FF/000479
#=GF DE General transcription factor IIH subunit
#=GF AC 2.30.29.30/FF/000479
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 94.675
#=GS O44499/1-116       AC O44499
#=GS O44499/1-116       OS Caenorhabditis elegans
#=GS O44499/1-116       DE General Transcription Factor homolog
#=GS O44499/1-116       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS B3RWB8/3-108       AC B3RWB8
#=GS B3RWB8/3-108       OS Trichoplax adhaerens
#=GS B3RWB8/3-108       DE Uncharacterized protein
#=GS B3RWB8/3-108       DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax adhaerens; 
#=GS A7RH50/1-107       AC A7RH50
#=GS A7RH50/1-107       OS Nematostella vectensis
#=GS A7RH50/1-107       DE Predicted protein
#=GS A7RH50/1-107       DR ORG; Eukaryota; Metazoa; Cnidaria; Anthozoa; Hexacorallia; Actiniaria; Edwardsiidae; Nematostella; Nematostella vectensis; 
#=GS W4XFR5/1-110       AC W4XFR5
#=GS W4XFR5/1-110       OS Strongylocentrotus purpuratus
#=GS W4XFR5/1-110       DE Uncharacterized protein
#=GS W4XFR5/1-110       DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS E9G9U7/1-111       AC E9G9U7
#=GS E9G9U7/1-111       OS Daphnia pulex
#=GS E9G9U7/1-111       DE Uncharacterized protein
#=GS E9G9U7/1-111       DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS E9HCW3/1-110       AC E9HCW3
#=GS E9HCW3/1-110       OS Daphnia pulex
#=GS E9HCW3/1-110       DE Uncharacterized protein
#=GS E9HCW3/1-110       DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia pulex; 
#=GS H2Z5J2/1-108       AC H2Z5J2
#=GS H2Z5J2/1-108       OS Ciona savignyi
#=GS H2Z5J2/1-108       DE Uncharacterized protein
#=GS H2Z5J2/1-108       DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona savignyi; 
#=GS A0A369S668/3-108   AC A0A369S668
#=GS A0A369S668/3-108   OS Trichoplax sp. H2
#=GS A0A369S668/3-108   DE General transcription factor IIH subunit 1
#=GS A0A369S668/3-108   DR ORG; Eukaryota; Metazoa; Placozoa; Trichoplacidae; Trichoplax; Trichoplax sp. H2; 
#=GS H3E924/5-116       AC H3E924
#=GS H3E924/5-116       OS Pristionchus pacificus
#=GS H3E924/5-116       DE Uncharacterized protein
#=GS H3E924/5-116       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS F6RMT1/1-110       AC F6RMT1
#=GS F6RMT1/1-110       OS Ciona intestinalis
#=GS F6RMT1/1-110       DE Uncharacterized protein
#=GS F6RMT1/1-110       DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; 
#=GS B6IEX8/1-108       AC B6IEX8
#=GS B6IEX8/1-108       OS Caenorhabditis briggsae
#=GS B6IEX8/1-108       DE Protein CBG26441
#=GS B6IEX8/1-108       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5U6W4/1-116   AC A0A2G5U6W4
#=GS A0A2G5U6W4/1-116   OS Caenorhabditis nigoni
#=GS A0A2G5U6W4/1-116   DE Uncharacterized protein
#=GS A0A2G5U6W4/1-116   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A164X0Z8/19-128  AC A0A164X0Z8
#=GS A0A164X0Z8/19-128  OS Daphnia magna
#=GS A0A164X0Z8/19-128  DE General transcription factor IIH subunit 1
#=GS A0A164X0Z8/19-128  DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GS A8WR44/1-116       AC A8WR44
#=GS A8WR44/1-116       OS Caenorhabditis briggsae
#=GS A8WR44/1-116       DE Protein CBG01668
#=GS A8WR44/1-116       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A0P5U139/1-110   AC A0A0P5U139
#=GS A0A0P5U139/1-110   OS Daphnia magna
#=GS A0A0P5U139/1-110   DE General transcription factor IIH subunit
#=GS A0A0P5U139/1-110   DR ORG; Eukaryota; Metazoa; Arthropoda; Crustacea; Branchiopoda; Phyllopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia; Daphnia magna; 
#=GF SQ 15
O44499/1-116               --MSDESEALLRVDHVKYRKAGDGKSPIGRLALFTDFIEWR-DNASPEVFTCKFIRINGQRVSPPHKSKVQLQLILKN-EDQATFVFLNPSASKEDLVKERDAVKEALQSALVKHRHRVN
B3RWB8/3-108               --LAKDEELLYQNTYVKHRKMM------GTFFLSTKRIVWKASDNDELQLCSYYPEIKMQKISPDTSSKVQLQLQLHN-GNSFNFHFANSDSA----KTERDQAKDFVQQLLIKSRKKP-
A7RH50/1-107               MAAVSESSVLLTVINTKYKKNS------GVLQLLTNNLTWSPQGSSAPKIDCKYSEIKVQRISPEGSSKVQLQVVLHD-NSSYSIHFTGQNA-----KKERDDVKELLAQLIPAHRKKA-
W4XFR5/1-110               -MAMSSEEVLLVVAQVRSRKSN------GSLYLMGKRLAWQEDNKEVFTVSHYYADVKQQRISQDTSSKVQLQILLHN-GSSTKFHFANRDGSAAQ-KQDRNDVKELLQQLLPKFRSQA-
E9G9U7/1-111               MTSSSSESILLLVSHVKLKKNE------GELYLMSERLGWMVGNKDSFNVTHKYCDIKTQKISPEGKPKVQLQVCLHD-GNATTFQFVNPAGQAEQ-MADRDKVKDLLQLTLPKFKRMI-
E9HCW3/1-110               -MTSTLESILLLVPHVKLEKNE------GNLYFMSERLGWMVGNKDSFDVTHKYCDIKTQKISAEGKPKVQLQVCLHD-GNATAFQFVNPAGQAEQ-MADRDKVKDLLKLTLQQSKRMI-
H2Z5J2/1-108               ---MSAEQIQLLINQVRFKKRD------GSLFLMSERLAWCPEGKDHFDVTHLYSDIKCQKVSPETKAKIQLQIILLN-ESSFVFHFANTN-VAEG-KSDREKVKNLLAQMLPQFRRTID
A0A369S668/3-108           --LAKDEELLYQNTYVKHRKMM------GTFFLSTKRIVWKASDNDELQLCSYYPEIKMQKISPDTSSKVQLQLQLHN-GNSFNFHFANSDSA----KTERDLAKDFVQQLLIKSRKKP-
H3E924/5-116               ------GGELLIVDHVKYRTSDAGKSPIGSLHLFTEYVEWR-DSSSPVRHKIAFGDIKGQKVSPPHKPKVQLQIVMQD-EGQSTFVFLRPNTTREQLVAERDTFKETLQQALVAHRQRVQ
F6RMT1/1-110               -TAMSAEQIQLLISQVRHKKRD------GSLYLMSERLAWCPEGRDHFDVSHLYSDIKCQKVSPEGKAKIQLQIILLN-ESSFVFHFSNTN-TAEG-KSDREKVKTLLAQMLPKFRRTID
B6IEX8/1-108               --MAHENEALLRVENV--------KSPIGQLILFDDHIEWR-DNASPEVFTCNFDRIVGQRVSPPHRARAQLELVLRNDDEQVTFVFFDPRASQEELAQQRDNVKQQLQTALFQHFQLV-
A0A2G5U6W4/1-116           --MADETEAIVRVDNVKYRKAGEGKSPIGRLILFSDYIEWR-DNASPEVFTCKFIRINGQRVSPPHKSKVQLQLNLRN-DEQATFVFLDPGASKEELTKQRDNIKEKLQAALLEHRHRVQ
A0A164X0Z8/19-128          -MTSSSESILLLVPHVKLKKNE------GELYLMSERLGWMVGNKDSFNVSHKYSDIKTQKISPEGKPKVQLQVCLHD-GSATTFQFVNPSGQAEQ-MADRDKVKDLLQLMLPKFKRMV-
A8WR44/1-116               --MSDETEALVRVDNVKYRKAGEGKSPIGRLILFSDYIEWR-DNASPEVFTCKFIRINGQRVSPPHKSKVQLQLNLRN-DEQATFVFLDPGASKEELTKQRDNIKEKLQAALLEHRHRVQ
A0A0P5U139/1-110           -MTSSSESILLLVPHVKLKKNE------GELYLMSERLGWMVGNKDSFNVSHKYSDIKTQKISPEGKPKVQLQVCLHD-GSATTFQFVNPSGQAEQ-MADRDKVKDLLQLMLPKFKRMV-
#=GC scorecons             003333444663634863563300000093748455464931454533344437358639779744558799853856054434849455433243034597369547644845465350
#=GC scorecons_70          _________*__*__**__*________*_*_*______*_____________*__*__*****____*****__*_*______*_*_____________**__*__*___*___*____
#=GC scorecons_80          _______________*____________*_*_*______*_____________*__*__*__**____*****__*________*_*_____________**__*__*___*________
#=GC scorecons_90          _______________*____________*___*______*________________*__*__*_____*_***__*________*_*_____________*___*______*________
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