# STOCKHOLM 1.0
#=GF ID 2.30.29.30/FF/000406
#=GF DE Putative RNA polymerase II transcription factor related protein
#=GF AC 2.30.29.30/FF/000406
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 87.016
#=GS O13745/4-104      AC O13745
#=GS O13745/4-104      OS Schizosaccharomyces pombe 972h-
#=GS O13745/4-104      DE General transcription and DNA repair factor IIH subunit tfb1
#=GS O13745/4-104      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Taphrinomycotina; Schizosaccharomycetes; Schizosaccharomycetales; Schizosaccharomycetaceae; Schizosaccharomyces; Schizosaccharomyces pombe; 
#=GS O13745/4-104      DR GO; GO:0000112; GO:0000439; GO:0000717; GO:0005675; GO:0005737; GO:0005829; GO:0006367; GO:0016251; 
#=GS E3KFN3/4-126      AC E3KFN3
#=GS E3KFN3/4-126      OS Puccinia graminis f. sp. tritici CRL 75-36-700-3
#=GS E3KFN3/4-126      DE Uncharacterized protein
#=GS E3KFN3/4-126      DR ORG; Eukaryota; Fungi; Dikarya; Basidiomycota; Pucciniomycotina; Pucciniomycetes; Pucciniales; Pucciniaceae; Puccinia; Puccinia graminis; 
#=GS Q9P5N7/6-112      AC Q9P5N7
#=GS Q9P5N7/6-112      OS Neurospora crassa OR74A
#=GS Q9P5N7/6-112      DE General transcription and DNA repair factor IIH subunit tcf-29
#=GS Q9P5N7/6-112      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; 
#=GS Q5B1L1/3-110      AC Q5B1L1
#=GS Q5B1L1/3-110      OS Aspergillus nidulans FGSC A4
#=GS Q5B1L1/3-110      DE RNA polymerase II transcription factor related protein (AFU_orthologue AFUA_4G11690)
#=GS Q5B1L1/3-110      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus nidulans; 
#=GS A0A1U8QHA5/3-110  AC A0A1U8QHA5
#=GS A0A1U8QHA5/3-110  OS Aspergillus nidulans FGSC A4
#=GS A0A1U8QHA5/3-110  DE Uncharacterized protein
#=GS A0A1U8QHA5/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus nidulans; 
#=GS A7EKT8/4-109      AC A7EKT8
#=GS A7EKT8/4-109      OS Sclerotinia sclerotiorum 1980 UF-70
#=GS A7EKT8/4-109      DE Uncharacterized protein
#=GS A7EKT8/4-109      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum; 
#=GS F7VZI2/6-112      AC F7VZI2
#=GS F7VZI2/6-112      OS Sordaria macrospora k-hell
#=GS F7VZI2/6-112      DE WGS project CABT00000000 data, contig 2.15
#=GS F7VZI2/6-112      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Sordaria; Sordaria macrospora; 
#=GS F8MR25/6-112      AC F8MR25
#=GS F8MR25/6-112      OS Neurospora tetrasperma FGSC 2508
#=GS F8MR25/6-112      DE Uncharacterized protein
#=GS F8MR25/6-112      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora tetrasperma; 
#=GS A1CWG3/3-110      AC A1CWG3
#=GS A1CWG3/3-110      OS Aspergillus fischeri NRRL 181
#=GS A1CWG3/3-110      DE RNA polymerase II transcription factor related protein, putative
#=GS A1CWG3/3-110      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus fischeri; 
#=GS B0Y6Z8/3-110      AC B0Y6Z8
#=GS B0Y6Z8/3-110      OS Aspergillus fumigatus A1163
#=GS B0Y6Z8/3-110      DE RNA polymerase II transcription factor related protein
#=GS B0Y6Z8/3-110      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus fumigatus; 
#=GS A0A0S7E0R4/3-110  AC A0A0S7E0R4
#=GS A0A0S7E0R4/3-110  OS Aspergillus lentulus
#=GS A0A0S7E0R4/3-110  DE Putative RNA polymerase II transcription factor B subunit 1
#=GS A0A0S7E0R4/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus lentulus; 
#=GS A0A397IFD8/3-109  AC A0A397IFD8
#=GS A0A397IFD8/3-109  OS Aspergillus turcosus
#=GS A0A397IFD8/3-109  DE Uncharacterized protein
#=GS A0A397IFD8/3-109  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus turcosus; 
#=GS A0A2I1C4T6/3-110  AC A0A2I1C4T6
#=GS A0A2I1C4T6/3-110  OS Aspergillus novofumigatus IBT 16806
#=GS A0A2I1C4T6/3-110  DE Putative RNA polymerase II transcription factor-related protein
#=GS A0A2I1C4T6/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus novofumigatus; 
#=GS A0A3D8Q5E5/3-110  AC A0A3D8Q5E5
#=GS A0A3D8Q5E5/3-110  OS Aspergillus mulundensis
#=GS A0A3D8Q5E5/3-110  DE Uncharacterized protein
#=GS A0A3D8Q5E5/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus mulundensis; 
#=GS A0A0U5HDW0/3-110  AC A0A0U5HDW0
#=GS A0A0U5HDW0/3-110  OS Aspergillus calidoustus
#=GS A0A0U5HDW0/3-110  DE Putative RNA polymerase II transcription factor related protein
#=GS A0A0U5HDW0/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus calidoustus; 
#=GS A0A0B0E0J5/6-112  AC A0A0B0E0J5
#=GS A0A0B0E0J5/6-112  OS Neurospora crassa
#=GS A0A0B0E0J5/6-112  DE Uncharacterized protein
#=GS A0A0B0E0J5/6-112  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora crassa; 
#=GS G4URS9/6-112      AC G4URS9
#=GS G4URS9/6-112      OS Neurospora tetrasperma FGSC 2509
#=GS G4URS9/6-112      DE Uncharacterized protein
#=GS G4URS9/6-112      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora; Neurospora tetrasperma; 
#=GS A0A1D9Q4F6/4-109  AC A0A1D9Q4F6
#=GS A0A1D9Q4F6/4-109  OS Sclerotinia sclerotiorum 1980 UF-70
#=GS A0A1D9Q4F6/4-109  DE Uncharacterized protein
#=GS A0A1D9Q4F6/4-109  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Leotiomycetes; Helotiales; Sclerotiniaceae; Sclerotinia; Sclerotinia sclerotiorum; 
#=GS A0A3R7FBK4/3-109  AC A0A3R7FBK4
#=GS A0A3R7FBK4/3-109  OS Aspergillus turcosus
#=GS A0A3R7FBK4/3-109  DE Uncharacterized protein
#=GS A0A3R7FBK4/3-109  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus turcosus; 
#=GS A0A229XYN7/3-110  AC A0A229XYN7
#=GS A0A229XYN7/3-110  OS Aspergillus fumigatus
#=GS A0A229XYN7/3-110  DE Uncharacterized protein
#=GS A0A229XYN7/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus fumigatus; 
#=GS A0A0J5PEN7/3-110  AC A0A0J5PEN7
#=GS A0A0J5PEN7/3-110  OS Aspergillus fumigatus Z5
#=GS A0A0J5PEN7/3-110  DE RNA polymerase II transcription factor-like protein
#=GS A0A0J5PEN7/3-110  DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus fumigatus; 
#=GS Q4WQ61/3-110      AC Q4WQ61
#=GS Q4WQ61/3-110      OS Aspergillus fumigatus Af293
#=GS Q4WQ61/3-110      DE RNA polymerase II transcription factor related protein
#=GS Q4WQ61/3-110      DR ORG; Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus fumigatus; 
#=GF SQ 22
O13745/4-104              -------RVEALAIFRKKQGVLSID---SRLKWT---GEGKTTPSVDIAFDAISNLQTTPASNPKVMIRVFIVV----------KE--GEDPTSLVFHFTGTPNARENCDMITNELRNAIQRQREG-
E3KFN3/4-126              NDPSSSSIVEAITIYKKKTGKLLLTN--SVLKWIPKDGAGSGAEVVSIDFPRLHSLFSSREGGPKVILKIVAKAISTSPTPTDGSNPTSTGEETYNFAFTS-SDPLSDRETFKKHISEIILQNRGQ-
Q9P5N7/6-112              -------IPRGQASYKKREGIITLTPDKTALIWSP--LPGTGPPVISLSVSNITNLQQTPKTNPKVVLRVVEKP-----------KAPGADPAAYPFQFTHATEARNEADAIKDLLSQIIAELRGDD
Q5B1L1/3-110              -------PPSGSAAYKKKDGTLTMSADRQSVSWIP--AAGGASGTITISVAQITNLQQTPASSPKVMLKIFALP----------SNNPSAAPEQYIFSFTAGATARAEADAIKDALSAAIQAAKTAQ
A0A1U8QHA5/3-110          -------PPSGSAAYKKKDGTLTMSADRQSVSWIP--AAGGASGTITISVAQITNLQQTPASSPKVMLKIFALP----------SNNPSAAPEQYIFSFTAGATARAEADAIKDALSAAIQAAKTAQ
A7EKT8/4-109              -------PAQGLAVYKKKDGTLSISQDGKSIHWVP--LRPDGGAVVNIAVAEITNLQQTPETAAKVMLKIFEKS----------ANAPESV--THLFHFNSPANPRGEANAVKDALTILISALKAAD
F7VZI2/6-112              -------IPRGRASFKKREGIITLSEDKTALIWSP--LPGTGPPVISLSVSNIINLQQTPKTNPKVVLRVVEKP-----------KAPGADPAAYPFQFTHGTEARNEADAIKDILSQIIAELRGDD
F8MR25/6-112              -------IPRGQASYKKREGIITLTPDKTALIWSP--LPGTGPPVISLSVSNITNLQQTPKTNPKVVLRVVEKP-----------KAPGADPAAYPFQFTHATEARNEADAIKDLLSQIIAELRGDD
A1CWG3/3-110              -------PPSGSAAYKKKDGTLTMSQDGQSISWIP--AAGGATGTITIPVSQITNLQQTPASNPKVMLKIFVLP----------PNTPNDSPDQYVFSFTAGANARAEANAIKDALSAAIQAAKTAA
B0Y6Z8/3-110              -------PPSGSAAYKKKDGTLTMSQDSQSISWIP--AAGGATGTITIPVSQITNLQQTPASNPKVMLKIFALP----------PNAPNESPDQYVFSFTAGANARAEANAIKDALSAAIQAAKTAA
A0A0S7E0R4/3-110          -------PPSGSAAYKKKDGTLTMSQDGQSISWIP--AAGGATGMITIPVSQITNLQQTPASNPKVMLKIFVLP----------PNTPNDSPEQYVFSFTAGANARAEANAIKDALSAAIQAAKTAA
A0A397IFD8/3-109          -------PPSGSAAYKKKDGTLTLSQDGQSISWIP--AAGGATGTITIPVSQITNLQQTPASSAKVMLKIFVLP----------SNAPNDSPDQYVFSFTAGANARAEANAIKDALSTSIQAAKSA-
A0A2I1C4T6/3-110          -------PPSGSAAYKKKDGTLTMSQDCQSISWIP--AAGGATGTITIPVSQITNLQQTPASNPKVMLKVFVLP----------PNTPNDSPDQYVFSFTAGANARAEANAIKDALSTAIQAAKTAA
A0A3D8Q5E5/3-110          -------PPSGSAAYKKKDGTLTMSSDRQSVSWIP--AAGGASGTITISVTQISNLQQTPASSPKVMLKIFVLP----------PNDPSAAPEQYIFSFTAGATARAEADAIKDALSAAIQAAKSAQ
A0A0U5HDW0/3-110          -------PPSGSAAYKKKDGTLTMSPDRQSVSWIP--AAGGASGTITISVSQVTNLQQTPASSPKVMLKIFVLP----------PNNPSAAPEQYIFSFTAGANARAEADAIKDALSAAIQAAKSAQ
A0A0B0E0J5/6-112          -------IPRGQASYKKREGIITLTPDKTALIWSP--LPGTGPPVISLSVSNITNLQQTPKTNPKVVLRVVEKP-----------KAPGADPAAYPFQFTHATEARNEADAIKDLLSQIIAELRGDD
G4URS9/6-112              -------IPRGQASYKKREGIITLTPDKTALIWSP--LPGTGPPVISLSVSNITNLQQTPKTNPKVVLRVVEKP-----------KAPGADPAAYPFQFTHATEARNEADAIKDLLSQIIAELRGDD
A0A1D9Q4F6/4-109          -------PAQGLAVYKKKDGTLSISQDGKSIHWVP--LRPDGGAVVNIAVAEITNLQQTPETAAKVMLKIFEKS----------ANAPESV--THLFHFNSPANPRGEANAVKDALTILISALKAAD
A0A3R7FBK4/3-109          -------PPSGSAAYKKKDGTLTLSQDGQSISWIP--AAGGATGTITIPVSQITNLQQTPASSAKVMLKIFVLP----------SNAPNDSPDQYVFSFTAGANARAEANAIKDALSTSIQAAKTA-
A0A229XYN7/3-110          -------PPSGSAAYKKKDGTLTMSQDSQSISWIP--AAGGATGTITIPVSQITNLQQTPASNPKVMLKIFALP----------PNAPNDSPDQYVFSFTAGANARAEANAIKDALSAAIQAAKTAA
A0A0J5PEN7/3-110          -------PPSGSAAYKKKDGTLTMSQDSQSISWIP--AAGGATGTITIPVSQITNLQQTPASNPKVMLKIFALP----------PNAPNDSPDQYVFSFTAGANARAEANAIKDALSAAIQAAKTAA
Q4WQ61/3-110              -------PPSGSAAYKKKDGTLTMSQDSQSISWIP--AAGGATGTITIPVSQITNLQQTPASNPKVMLKIFALP----------PNAPNDSPDQYVFSFTAGANARAEANAIKDALSAAIQAAKTAA
#=GC scorecons            0000000464738488975957665362456495700457454457574754768976874557996877644600000000002646444534749497445577476677774863494447452
#=GC scorecons_70         __________*_*_****_*_*__________*_*____*_____*_*_*__*_******___*******_________________*______*_*_**____**_**_****_**__*___*___
#=GC scorecons_80         __________*_*_****_*____________*_*____*_____*______*_***_**___***_***________________________*_*_**_____*_*__****_*___*_______
#=GC scorecons_90         ____________*_***__*____________*______________________*________**_*____________________________*_*________________*___*_______
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