# STOCKHOLM 1.0
#=GF ID 2.30.29.30/FF/000363
#=GF DE Putative E3 ubiquitin-protein ligase HERC1
#=GF AC 2.30.29.30/FF/000363
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 65.720
#=GS Q947D2/12-129      AC Q947D2
#=GS Q947D2/12-129      OS Arabidopsis thaliana
#=GS Q947D2/12-129      DE PH, RCC1 and FYVE domains-containing protein 1
#=GS Q947D2/12-129      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q947D2/12-129      DR GO; GO:0017112; GO:0035091; GO:0070300; 
#=GS Q9SRZ7/14-134      AC Q9SRZ7
#=GS Q9SRZ7/14-134      OS Arabidopsis thaliana
#=GS Q9SRZ7/14-134      DE F12P19.9 protein
#=GS Q9SRZ7/14-134      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9SRZ7/14-134      DR GO; GO:0005773; GO:0005886; 
#=GS F4K0X5/20-138      AC F4K0X5
#=GS F4K0X5/20-138      OS Arabidopsis thaliana
#=GS F4K0X5/20-138      DE Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein
#=GS F4K0X5/20-138      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4K0X5/20-138      DR GO; GO:0005886; 
#=GS A0A178WMI8/12-129  AC A0A178WMI8
#=GS A0A178WMI8/12-129  OS Arabidopsis thaliana
#=GS A0A178WMI8/12-129  DE PRAF1
#=GS A0A178WMI8/12-129  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS V4KMT4/14-134      AC V4KMT4
#=GS V4KMT4/14-134      OS Eutrema salsugineum
#=GS V4KMT4/14-134      DE Uncharacterized protein
#=GS V4KMT4/14-134      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS M4FAR6/14-134      AC M4FAR6
#=GS M4FAR6/14-134      OS Brassica rapa subsp. pekinensis
#=GS M4FAR6/14-134      DE Uncharacterized protein
#=GS M4FAR6/14-134      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS A0A1J3EV22/32-152  AC A0A1J3EV22
#=GS A0A1J3EV22/32-152  OS Noccaea caerulescens
#=GS A0A1J3EV22/32-152  DE Ultraviolet-B receptor UVR8
#=GS A0A1J3EV22/32-152  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS A0A087HFX4/14-134  AC A0A087HFX4
#=GS A0A087HFX4/14-134  OS Arabis alpina
#=GS A0A087HFX4/14-134  DE Uncharacterized protein
#=GS A0A087HFX4/14-134  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Arabideae; Arabis; Arabis alpina; 
#=GS R0HUR4/49-169      AC R0HUR4
#=GS R0HUR4/49-169      OS Capsella rubella
#=GS R0HUR4/49-169      DE Uncharacterized protein
#=GS R0HUR4/49-169      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS D7KT15/14-134      AC D7KT15
#=GS D7KT15/14-134      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KT15/14-134      DE Uncharacterized protein
#=GS D7KT15/14-134      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A078H2I6/14-134  AC A0A078H2I6
#=GS A0A078H2I6/14-134  OS Brassica napus
#=GS A0A078H2I6/14-134  DE BnaA06g20390D protein
#=GS A0A078H2I6/14-134  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS A0A0D3BH44/14-134  AC A0A0D3BH44
#=GS A0A0D3BH44/14-134  OS Brassica oleracea var. oleracea
#=GS A0A0D3BH44/14-134  DE Uncharacterized protein
#=GS A0A0D3BH44/14-134  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A3P6FWT7/13-129  AC A0A3P6FWT7
#=GS A0A3P6FWT7/13-129  OS Brassica oleracea
#=GS A0A3P6FWT7/13-129  DE Uncharacterized protein
#=GS A0A3P6FWT7/13-129  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A0D3CW98/13-129  AC A0A0D3CW98
#=GS A0A0D3CW98/13-129  OS Brassica oleracea var. oleracea
#=GS A0A0D3CW98/13-129  DE Uncharacterized protein
#=GS A0A0D3CW98/13-129  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS R0HX99/12-128      AC R0HX99
#=GS R0HX99/12-128      OS Capsella rubella
#=GS R0HX99/12-128      DE Uncharacterized protein
#=GS R0HX99/12-128      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS M4CHL5/7-120       AC M4CHL5
#=GS M4CHL5/7-120       OS Brassica rapa subsp. pekinensis
#=GS M4CHL5/7-120       DE Uncharacterized protein
#=GS M4CHL5/7-120       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS D7KTY5/12-129      AC D7KTY5
#=GS D7KTY5/12-129      OS Arabidopsis lyrata subsp. lyrata
#=GS D7KTY5/12-129      DE Zinc finger protein
#=GS D7KTY5/12-129      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS M4DGT2/14-131      AC M4DGT2
#=GS M4DGT2/14-131      OS Brassica rapa subsp. pekinensis
#=GS M4DGT2/14-131      DE Uncharacterized protein
#=GS M4DGT2/14-131      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GS V4JQB3/12-129      AC V4JQB3
#=GS V4JQB3/12-129      OS Eutrema salsugineum
#=GS V4JQB3/12-129      DE Uncharacterized protein
#=GS V4JQB3/12-129      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A1J3EEK1/12-131  AC A0A1J3EEK1
#=GS A0A1J3EEK1/12-131  OS Noccaea caerulescens
#=GS A0A1J3EEK1/12-131  DE Putative E3 ubiquitin-protein ligase HERC1
#=GS A0A1J3EEK1/12-131  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS A0A1J3JVJ2/12-131  AC A0A1J3JVJ2
#=GS A0A1J3JVJ2/12-131  OS Noccaea caerulescens
#=GS A0A1J3JVJ2/12-131  DE Putative E3 ubiquitin-protein ligase HERC1
#=GS A0A1J3JVJ2/12-131  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Coluteocarpeae; Noccaea; Noccaea caerulescens; 
#=GS V4K8R0/12-129      AC V4K8R0
#=GS V4K8R0/12-129      OS Eutrema salsugineum
#=GS V4K8R0/12-129      DE Uncharacterized protein
#=GS V4K8R0/12-129      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS A0A0D3D198/14-131  AC A0A0D3D198
#=GS A0A0D3D198/14-131  OS Brassica oleracea var. oleracea
#=GS A0A0D3D198/14-131  DE Uncharacterized protein
#=GS A0A0D3D198/14-131  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS A0A3P6GGM8/14-131  AC A0A3P6GGM8
#=GS A0A3P6GGM8/14-131  OS Brassica oleracea
#=GS A0A3P6GGM8/14-131  DE Uncharacterized protein
#=GS A0A3P6GGM8/14-131  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; 
#=GS A0A078JW11/13-130  AC A0A078JW11
#=GS A0A078JW11/13-130  OS Brassica napus
#=GS A0A078JW11/13-130  DE BnaC06g43200D protein
#=GS A0A078JW11/13-130  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica napus; 
#=GS R0FDB7/20-138      AC R0FDB7
#=GS R0FDB7/20-138      OS Capsella rubella
#=GS R0FDB7/20-138      DE Uncharacterized protein
#=GS R0FDB7/20-138      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Capsella; Capsella rubella; 
#=GS A0A0D3EFZ7/14-131  AC A0A0D3EFZ7
#=GS A0A0D3EFZ7/14-131  OS Brassica oleracea var. oleracea
#=GS A0A0D3EFZ7/14-131  DE Uncharacterized protein
#=GS A0A0D3EFZ7/14-131  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica oleracea; Brassica oleracea var. oleracea; 
#=GS V4LBZ3/20-138      AC V4LBZ3
#=GS V4LBZ3/20-138      OS Eutrema salsugineum
#=GS V4LBZ3/20-138      DE Uncharacterized protein
#=GS V4LBZ3/20-138      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Eutremeae; Eutrema; Eutrema salsugineum; 
#=GS D7M4I7/20-138      AC D7M4I7
#=GS D7M4I7/20-138      OS Arabidopsis lyrata subsp. lyrata
#=GS D7M4I7/20-138      DE Ran GTPase binding protein
#=GS D7M4I7/20-138      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS M4E3M1/56-174      AC M4E3M1
#=GS M4E3M1/56-174      OS Brassica rapa subsp. pekinensis
#=GS M4E3M1/56-174      DE Uncharacterized protein
#=GS M4E3M1/56-174      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Brassiceae; Brassica; Brassica rapa; Brassica rapa subsp. pekinensis; 
#=GF SQ 30
Q947D2/12-129              HNLEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKTLISTGQGG----
Q9SRZ7/14-134              RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGEEERQLRLSSVITIVRGQITPNFQKQAQSDRKEQSFSLIYANGEHTLDLICKDKAQADSWFKGLRAVITKHHNIRNS-
F4K0X5/20-138              -DIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWFSGNEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYS--ERSLDVICKDKDEAEVWFTGLKALISHCHQRNRRT
A0A178WMI8/12-129          HNLEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKTLISTGQGG----
V4KMT4/14-134              RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGQEERQLRLSSVITIVRGQITPNFQKQAQPDRKEQSFSLIYANGEHTLDLICKDKAQADSWFKGLRAVITKHHNARSS-
M4FAR6/14-134              RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGQDERQLRLSSVITIVRGQITPKFEKQAQPDRKEQSFSLVYANGEYTLDLICKDKAQADSWFKGLRAVITKHHNARSS-
A0A1J3EV22/32-152          RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGQEERQLRLSSVITIVRGQITPNFQKQAQPDRKEQSFSLIYANGEHTLDLICKDKAQADSWFKGLRAVITKHHNVRTS-
A0A087HFX4/14-134          RTDEQAILALKKGAQLLKFRRRGNPKFCPFRLSMDEKYLIWYSGQEERQLKLSSVITIVRGQITPNFQKQAQSDRKEQSFSLIYANGEHTLDLICKDKAQADSWFKGLRAVITKHHNIRNS-
R0HUR4/49-169              RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGQEERQLRLSSVITIVRGQITPNFQKQAQSDRKEQSFSLIYANGEHTLDLICKDKAQADSWFKGLRAVITKHHNIRSS-
D7KT15/14-134              RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGEEERQLRLSSVITIVRGQITPNFQKQAQSDRKEQSFSLIYANGEHTLDLICKDKAQADSWFKGLRAVITKHHNIRNS-
A0A078H2I6/14-134          RTDEQAILALKKGAQLLKCRRRGNPKFCPFKLSMDEKYLIWYSGQDERQLRLSSVITIVRGQITPKFEKQAQPDRKEQSFSLVYANGEYTLDLICKDKAQADSWFKGLRAVITKHHNARSS-
A0A0D3BH44/14-134          RTDEQAILALKKGAQLLKCRRRGNPKFCHFKLSMDEKYLIWYSGQDERQLRLSSVITIVRGQITPKFQKQAQPDRKEQSFSLVYANGEYTLDLICKDKAQAGSWFKGLRAVITKHHNARSS-
A0A3P6FWT7/13-129          HNLEQALNTLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEVWIGGLKTLISGGQG-----
A0A0D3CW98/13-129          HNLEQALNTLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEVWIGGLKTLISGGQG-----
R0HX99/12-128              HNVEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKTLISGGQG-----
M4CHL5/7-120               ---WQALNTLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEVWIGGLKTLISGGQG-----
D7KTY5/12-129              HNVEQALITLKKGTQLLKYGRKGKPKFYPFRLSTDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKTLISTGQGG----
M4DGT2/14-131              HNVEQALITLKKGSQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEAWIGGLRALISAGQGG----
V4JQB3/12-129              QNVEQALVTLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKSLISSGQGG----
A0A1J3EEK1/12-131          HNVEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKTLIWISTSGEKRLKLASVSKIIPGQRSAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKTLISSGQGDRS--
A0A1J3JVJ2/12-131          HNVEQALITLKKGTQLLKYGRKGKPKFYPFRLSSDEKTLIWISTSGEKRLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKTLISSGQGDRS--
V4K8R0/12-129              QNVEQALVTLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIIPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEIWIGGLKSLISSGQGG----
A0A0D3D198/14-131          HNVEQALITLKKGSQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEAWIGGLRALISAGQGG----
A0A3P6GGM8/14-131          HNVEQALITLKKGSQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEAWIGGLRALISAGQGG----
A0A078JW11/13-130          HNLEQALNTLKKGTQLLKYGRKGKPKFYPFRLSSDEKSLIWISSSGEKRLKLASVSKIVPGQRTAVFQRYLRPEKDYLSFSLLYNGKKKSLDLICKDKVEAEVWIGGLKTLISGGQGG----
R0FDB7/20-138              -DIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWFSGNEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYS--ERSLDVICKDKDEAEVWFTGLKALVSHCHQRNRRT
A0A0D3EFZ7/14-131          -DIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYS--ERSLDVICKDKDEAEVWFSGLKALISRYYQRNRR-
V4LBZ3/20-138              -DIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWISGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYS--ERSLDVICKDKDEAEVWFTGLKALISHCHQRNRRT
D7M4I7/20-138              -DIEQAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWFSGNEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYS--ERSLDVICKDKDEAEVWFTGLKALISHCHQRNRRT
M4E3M1/56-174              -IAYEAIIALKKGAYLLKYGRRGKPKFCPFRLSNDETVLIWFSGKEEKHLKLSHVSRIISGQRTPIFQRYPRPEKEYQSFSLIYS--ERSLDVICKDKDEAEVWFSGLKALISHFRQRTRRT
#=GC scorecons             34378965699996699966979699968979949964999595459759796695597499586498754677755599996953365699799999469749549976686346422110
#=GC scorecons_70          ___****_*****_*****_*************_***_***_*___**_***_**__**_**_*__***__****___****_*_____*********_***_*__*******__*______
#=GC scorecons_80          ___***___****__***__*_*_***_*****_**__***_*___**_***__*__**_**_*__***___***___****_*______********__*__*__**___*__________
#=GC scorecons_90          ____**___****__***__*_*_***_**_**_**__***_*___*__*_*__*__*__**_*__**__________****_*______**_*****__*__*__**___*__________
//