# STOCKHOLM 1.0
#=GF ID 2.10.50.10/FF/000041
#=GF DE CD40 isoform 1
#=GF AC 2.10.50.10/FF/000041
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 86.650
#=GS P27512/75-103       AC P27512
#=GS P27512/75-103       OS Mus musculus
#=GS P27512/75-103       DE Tumor necrosis factor receptor superfamily member 5
#=GS P27512/75-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS P27512/75-103       DR GO; GO:0001934; GO:0002768; GO:0003823; GO:0005515; GO:0005615; GO:0005737; GO:0005886; GO:0006874; GO:0006954; GO:0009897; GO:0009986; GO:0019899; GO:0019904; GO:0030890; GO:0031625; GO:0032735; GO:0035631; GO:0042113; GO:0042531; GO:0042832; GO:0043025; GO:0043196; GO:0043231; GO:0043406; GO:0043491; GO:0043536; GO:0043547; GO:0045766; GO:0045944; GO:0048304; GO:0050776; GO:0051023; GO:0051092; GO:0051607; GO:0090037; GO:2000353; 
#=GS P25942/76-103       AC P25942
#=GS P25942/76-103       OS Homo sapiens
#=GS P25942/76-103       DE Tumor necrosis factor receptor superfamily member 5
#=GS P25942/76-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS P25942/76-103       DR GO; GO:0001934; GO:0005515; GO:0005886; GO:0005887; GO:0006874; GO:0006954; GO:0009986; GO:0019899; GO:0030168; GO:0031625; GO:0033209; GO:0035631; GO:0038023; GO:0042100; GO:0042531; GO:0043123; GO:0043406; GO:0043536; GO:0043547; GO:0045766; GO:0045944; GO:0050776; GO:0051092; GO:0065003; GO:0070062; GO:0071260; GO:0090037; GO:2000353; 
#=GS Q4QQW2/74-103       AC Q4QQW2
#=GS Q4QQW2/74-103       OS Rattus norvegicus
#=GS Q4QQW2/74-103       DE CD40 molecule
#=GS Q4QQW2/74-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS Q4QQW2/74-103       DR GO; GO:0003823; GO:0005615; GO:0005737; GO:0006954; GO:0009617; GO:0009986; GO:0019904; GO:0031667; GO:0033590; GO:0034341; GO:0036018; GO:0043025; GO:0043196; GO:0071222; GO:0071347; GO:0071356; GO:1901652; 
#=GS A0A2R8QCA6/148-174  AC A0A2R8QCA6
#=GS A0A2R8QCA6/148-174  OS Danio rerio
#=GS A0A2R8QCA6/148-174  DE Tumor necrosis factor receptor superfamily, member 11b
#=GS A0A2R8QCA6/148-174  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS A0A2R8QCA6/148-174  DR GO; GO:0009612; 
#=GS A0A0S2Z3C7/76-103   AC A0A0S2Z3C7
#=GS A0A0S2Z3C7/76-103   OS Homo sapiens
#=GS A0A0S2Z3C7/76-103   DE CD40 molecule TNF receptor superfamily member 5 isoform 1
#=GS A0A0S2Z3C7/76-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS A0A0D9RQI3/75-103   AC A0A0D9RQI3
#=GS A0A0D9RQI3/75-103   OS Chlorocebus sabaeus
#=GS A0A0D9RQI3/75-103   DE Uncharacterized protein
#=GS A0A0D9RQI3/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS A0A2K6MI66/75-103   AC A0A2K6MI66
#=GS A0A2K6MI66/75-103   OS Rhinopithecus bieti
#=GS A0A2K6MI66/75-103   DE Uncharacterized protein
#=GS A0A2K6MI66/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus bieti; 
#=GS A0A2R9C4Y2/76-103   AC A0A2R9C4Y2
#=GS A0A2R9C4Y2/76-103   OS Pan paniscus
#=GS A0A2R9C4Y2/76-103   DE Uncharacterized protein
#=GS A0A2R9C4Y2/76-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan paniscus; 
#=GS G3S851/76-103       AC G3S851
#=GS G3S851/76-103       OS Gorilla gorilla gorilla
#=GS G3S851/76-103       DE CD40 molecule
#=GS G3S851/76-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS A0A2K5Y6E3/75-103   AC A0A2K5Y6E3
#=GS A0A2K5Y6E3/75-103   OS Mandrillus leucophaeus
#=GS A0A2K5Y6E3/75-103   DE Uncharacterized protein
#=GS A0A2K5Y6E3/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Mandrillus; Mandrillus leucophaeus; 
#=GS A0A2K5L6D3/75-103   AC A0A2K5L6D3
#=GS A0A2K5L6D3/75-103   OS Cercocebus atys
#=GS A0A2K5L6D3/75-103   DE Uncharacterized protein
#=GS A0A2K5L6D3/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Cercocebus; Cercocebus atys; 
#=GS A0A2K6AST0/75-103   AC A0A2K6AST0
#=GS A0A2K6AST0/75-103   OS Macaca nemestrina
#=GS A0A2K6AST0/75-103   DE Uncharacterized protein
#=GS A0A2K6AST0/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS A0A2K5HIJ6/75-103   AC A0A2K5HIJ6
#=GS A0A2K5HIJ6/75-103   OS Colobus angolensis palliatus
#=GS A0A2K5HIJ6/75-103   DE Uncharacterized protein
#=GS A0A2K5HIJ6/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Colobus; Colobus angolensis; Colobus angolensis palliatus; 
#=GS K7BNQ5/76-103       AC K7BNQ5
#=GS K7BNQ5/76-103       OS Pan troglodytes
#=GS K7BNQ5/76-103       DE CD40 isoform 1
#=GS K7BNQ5/76-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2K6Q9B7/75-103   AC A0A2K6Q9B7
#=GS A0A2K6Q9B7/75-103   OS Rhinopithecus roxellana
#=GS A0A2K6Q9B7/75-103   DE Uncharacterized protein
#=GS A0A2K6Q9B7/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus roxellana; 
#=GS G7PG38/75-103       AC G7PG38
#=GS G7PG38/75-103       OS Macaca fascicularis
#=GS G7PG38/75-103       DE CD40L receptor
#=GS G7PG38/75-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS F6SNI1/75-103       AC F6SNI1
#=GS F6SNI1/75-103       OS Macaca mulatta
#=GS F6SNI1/75-103       DE Tumor necrosis factor receptor superfamily member 5 isoform 1
#=GS F6SNI1/75-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca mulatta; 
#=GS Q9JKE0/74-103       AC Q9JKE0
#=GS Q9JKE0/74-103       OS Rattus norvegicus
#=GS Q9JKE0/74-103       DE CD40 protein
#=GS Q9JKE0/74-103       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS A0A2K5Y6E9/75-103   AC A0A2K5Y6E9
#=GS A0A2K5Y6E9/75-103   OS Mandrillus leucophaeus
#=GS A0A2K5Y6E9/75-103   DE Uncharacterized protein
#=GS A0A2K5Y6E9/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Mandrillus; Mandrillus leucophaeus; 
#=GS A0A2K5L6D4/75-103   AC A0A2K5L6D4
#=GS A0A2K5L6D4/75-103   OS Cercocebus atys
#=GS A0A2K5L6D4/75-103   DE Uncharacterized protein
#=GS A0A2K5L6D4/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Cercocebus; Cercocebus atys; 
#=GS A0A2K6AST2/75-103   AC A0A2K6AST2
#=GS A0A2K6AST2/75-103   OS Macaca nemestrina
#=GS A0A2K6AST2/75-103   DE Uncharacterized protein
#=GS A0A2K6AST2/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS A0A2K5V5E1/75-103   AC A0A2K5V5E1
#=GS A0A2K5V5E1/75-103   OS Macaca fascicularis
#=GS A0A2K5V5E1/75-103   DE Uncharacterized protein
#=GS A0A2K5V5E1/75-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A2J8MJS6/76-103   AC A0A2J8MJS6
#=GS A0A2J8MJS6/76-103   OS Pan troglodytes
#=GS A0A2J8MJS6/76-103   DE CD40 isoform 7
#=GS A0A2J8MJS6/76-103   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2R8QUG2/165-189  AC A0A2R8QUG2
#=GS A0A2R8QUG2/165-189  OS Danio rerio
#=GS A0A2R8QUG2/165-189  DE Zgc:153631
#=GS A0A2R8QUG2/165-189  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS F1QXB6/165-189      AC F1QXB6
#=GS F1QXB6/165-189      OS Danio rerio
#=GS F1QXB6/165-189      DE Zgc:153631
#=GS F1QXB6/165-189      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GS B0V325/232-256      AC B0V325
#=GS B0V325/232-256      OS Danio rerio
#=GS B0V325/232-256      DE Zgc:153631
#=GS B0V325/232-256      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Teleostei; Otomorpha; Ostariophysi; Cypriniphysae; Cypriniformes; Cyprinoidei; Cyprinidae; Danio; Danio rerio; 
#=GF SQ 26
P27512/75-103               -IRCHQHRHCEPNQGLRVKKEGTAESDTVC
P25942/76-103               --HCHQHKYCDPNLGLRVQQKGTSETDTIC
Q4QQW2/74-103               EIRCHQHRHCELNQGLQVKKEGTAVSDTVC
A0A2R8QCA6/148-174          QHFCRRHSVCRP--GHGVKTAGTPYSDTV-
A0A0S2Z3C7/76-103           --HCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A0D9RQI3/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K6MI66/75-103           -TRCHQHKYCDPNLGLRVQQKGTSKTDTIC
A0A2R9C4Y2/76-103           --HCHQHKYCDPNLGLRVQQKGTSETDTIC
G3S851/76-103               --HCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K5Y6E3/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K5L6D3/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K6AST0/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K5HIJ6/75-103           -TRCHQHKYCDPNLGLRVQQKGTSKTDTTC
K7BNQ5/76-103               --HCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K6Q9B7/75-103           -TRCHQHKYCDPNLGLRVQQKGTSKTDTIC
G7PG38/75-103               -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
F6SNI1/75-103               -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
Q9JKE0/74-103               EIRCHQHRHCELNQGLQVKKEGTAVSDTVC
A0A2K5Y6E9/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K5L6D4/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K6AST2/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2K5V5E1/75-103           -TRCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2J8MJS6/76-103           --HCHQHKYCDPNLGLRVQQKGTSETDTIC
A0A2R8QUG2/165-189          ---ALQHSKCRP--GQYIKQAGTSSTDTVC
F1QXB6/165-189              ---ALQHSKCRP--GQYIKQAGTSSTDTVC
B0V325/232-256              ---ALQHSKCRP--GQYIKQAGTSSTDTVC
#=GC scorecons              013658954957329547664996369967
#=GC scorecons_70           ___*_**__*_*__*__***_***_*****
#=GC scorecons_80           _____**__*_*__*__*___**___**_*
#=GC scorecons_90           _____**__*____*______**___**__
//