# STOCKHOLM 1.0
#=GF ID 1.25.10.10/FF/000636
#=GF DE Nipped-B protein
#=GF AC 1.25.10.10/FF/000636
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 9.141
#=GS A0A1D5PIN0/1462-1596_1679-1851  AC A0A1D5PIN0
#=GS A0A1D5PIN0/1462-1596_1679-1851  OS Gallus gallus
#=GS A0A1D5PIN0/1462-1596_1679-1851  DE Nipped-B protein
#=GS A0A1D5PIN0/1462-1596_1679-1851  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS A0A452GMG1/1503-1633_1716-1887  AC A0A452GMG1
#=GS A0A452GMG1/1503-1633_1716-1887  OS Gopherus agassizii
#=GS A0A452GMG1/1503-1633_1716-1887  DE Nipped-B protein
#=GS A0A452GMG1/1503-1633_1716-1887  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Testudines; Cryptodira; Testudinoidea; Testudinidae; Gopherus; Gopherus agassizii; 
#=GS F7F7E2/1542-1676_1759-1930      AC F7F7E2
#=GS F7F7E2/1542-1676_1759-1930      OS Ornithorhynchus anatinus
#=GS F7F7E2/1542-1676_1759-1930      DE Nipped-B protein
#=GS F7F7E2/1542-1676_1759-1930      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Monotremata; Ornithorhynchidae; Ornithorhynchus; Ornithorhynchus anatinus; 
#=GS A0A3M0IZJ7/38-170_253-423       AC A0A3M0IZJ7
#=GS A0A3M0IZJ7/38-170_253-423       OS Hirundo rustica rustica
#=GS A0A3M0IZJ7/38-170_253-423       DE Nipped-B protein
#=GS A0A3M0IZJ7/38-170_253-423       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Passeriformes; Sylvioidea; Hirundinidae; Hirundo; Hirundo rustica; Hirundo rustica rustica; 
#=GS A0A0Q3M6K5/1499-1632_1715-1874  AC A0A0Q3M6K5
#=GS A0A0Q3M6K5/1499-1632_1715-1874  OS Amazona aestiva
#=GS A0A0Q3M6K5/1499-1632_1715-1874  DE Nipped-B protein
#=GS A0A0Q3M6K5/1499-1632_1715-1874  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Psittaciformes; Psittacidae; Amazona; Amazona aestiva; 
#=GS M7AXN6/1295-1427_1510-1676      AC M7AXN6
#=GS M7AXN6/1295-1427_1510-1676      OS Chelonia mydas
#=GS M7AXN6/1295-1427_1510-1676      DE Nipped-B protein
#=GS M7AXN6/1295-1427_1510-1676      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Testudines; Cryptodira; Chelonioidea; Cheloniidae; Chelonia; Chelonia mydas; 
#=GS A0A182C6G1/1501-1632_1715-1886  AC A0A182C6G1
#=GS A0A182C6G1/1501-1632_1715-1886  OS Gallus gallus gallus
#=GS A0A182C6G1/1501-1632_1715-1886  DE Nipped-B protein
#=GS A0A182C6G1/1501-1632_1715-1886  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; Gallus gallus gallus; 
#=GS F1NJ66/1501-1632_1715-1886      AC F1NJ66
#=GS F1NJ66/1501-1632_1715-1886      OS Gallus gallus
#=GS F1NJ66/1501-1632_1715-1886      DE Nipped-B protein
#=GS F1NJ66/1501-1632_1715-1886      DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS A0A3Q2UAU6/1277-1410_1493-1664  AC A0A3Q2UAU6
#=GS A0A3Q2UAU6/1277-1410_1493-1664  OS Gallus gallus
#=GS A0A3Q2UAU6/1277-1410_1493-1664  DE Nipped-B protein
#=GS A0A3Q2UAU6/1277-1410_1493-1664  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS A0A1D5PGU3/1487-1620_1703-1874  AC A0A1D5PGU3
#=GS A0A1D5PGU3/1487-1620_1703-1874  OS Gallus gallus
#=GS A0A1D5PGU3/1487-1620_1703-1874  DE Nipped-B protein
#=GS A0A1D5PGU3/1487-1620_1703-1874  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; 
#=GS A0A182C5V8/1487-1620_1703-1874  AC A0A182C5V8
#=GS A0A182C5V8/1487-1620_1703-1874  OS Gallus gallus gallus
#=GS A0A182C5V8/1487-1620_1703-1874  DE Nipped-B protein
#=GS A0A182C5V8/1487-1620_1703-1874  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus; Gallus gallus; Gallus gallus gallus; 
#=GF SQ 11
A0A1D5PIN0/1462-1596_1679-1851          VLITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKINSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENTIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDYSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKLW
A0A452GMG1/1503-1633_1716-1887          ----NSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKMNSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
F7F7E2/1542-1676_1759-1930              VIITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKMNSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
A0A3M0IZJ7/38-170_253-423               -LMTNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGG-DEIQQLQKALLDYLKMNSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQK--
A0A0Q3M6K5/1499-1632_1715-1874          -LITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKMNSDTVDYEDACLVVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEG-------------
M7AXN6/1295-1427_1510-1676              --ITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFVQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKMNSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNE------
A0A182C6G1/1501-1632_1715-1886          ---TNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQASGGEDDIQQLQKALLDYLKIYSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARPDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
F1NJ66/1501-1632_1715-1886              ---TNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQASGGEDDIQQLQKALLDYLKIYSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENAIAVRTKAMKCLSEVVAVDPSILARPDMQRGVHGRLMDNSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
A0A3Q2UAU6/1277-1410_1493-1664          -LITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKINSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENTIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDYSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
A0A1D5PGU3/1487-1620_1703-1874          -LITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKINSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENTIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDYSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
A0A182C5V8/1487-1620_1703-1874          -LITNSYETAMRTAQNFLSIFLKKCGSKQGEEDYRPLFENFIQDLLSTVNKPEWPAAELLLSLLGRLLVHQFSNKSTEMALRVASLDYLGTVAARLRKDAVTSKMDQGSIARILKQVSGGEDEIQQLQKALLDYLKINSDTVDYEDACLIVRYLASMRPFAQSFDIYLTQILRVLGENTIAVRTKAMKCLSEVVAVDPSILARLDMQRGVHGRLMDYSTSVREAAVELLGRFVLCRPQLAEQYYDMLIERILDTGISVRKRVIKILRDICIEQPTFPKITEMCVKMIRRVNDEEGIKKLVNETFQKL-
#=GC scorecons                          02479999999999999999999999999999999999999799999999999999999999999999999999999999999999999999999999999999999999999999799979799999999999996699999999999799999999999999999999999999996999999999999999999999999799999999999969999999999999999999999999999999999999999999999999999999999999999999999999999995555555444430
#=GC scorecons_70                       ___*********************************************************************************************************************************************************************************************************************_******************************************************************************_____________
#=GC scorecons_80                       ___*************************************************************************************************************************************__****************************************_************************_************_******************************************************************************_____________
#=GC scorecons_90                       ____*************************************_**************************************************************************_***_*_*************__***********_****************************_************************_************_******************************************************************************_____________
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