# STOCKHOLM 1.0
#=GF ID 1.20.5.300/FF/000006
#=GF DE Spike glycoprotein
#=GF AC 1.20.5.300/FF/000006
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 65.373
#=GS P36334/1234-1295      AC P36334
#=GS P36334/1234-1295      OS Human coronavirus OC43
#=GS P36334/1234-1295      DE Spike glycoprotein
#=GS P36334/1234-1295      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P36334/1234-1295      DR GO; GO:0009405; GO:0016021; GO:0019031; GO:0019064; GO:0030246; GO:0046789; 
#=GS P11224/1201-1263      AC P11224
#=GS P11224/1201-1263      OS Murine hepatitis virus strain A59
#=GS P11224/1201-1263      DE Spike glycoprotein
#=GS P11224/1201-1263      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P11224/1201-1263      DR GO; GO:0042802; GO:0044177; 
#=GS Q0ZME7/1237-1293      AC Q0ZME7
#=GS Q0ZME7/1237-1293      OS Human coronavirus HKU1 (isolate N5)
#=GS Q0ZME7/1237-1293      DE Spike glycoprotein
#=GS Q0ZME7/1237-1293      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Human coronavirus HKU1; 
#=GS Q0ZME7/1237-1293      DR GO; GO:0042802; 
#=GS A0A2H4MZ26/1251-1312  AC A0A2H4MZ26
#=GS A0A2H4MZ26/1251-1312  OS Rodent coronavirus
#=GS A0A2H4MZ26/1251-1312  DE Spike glycoprotein
#=GS A0A2H4MZ26/1251-1312  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Coronavirinae; Rodent coronavirus; 
#=GS H9AA65/1245-1305      AC H9AA65
#=GS H9AA65/1245-1305      OS Rabbit coronavirus HKU14
#=GS H9AA65/1245-1305      DE Spike protein
#=GS H9AA65/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Rabbit coronavirus HKU14; 
#=GS Q14EB0/1238-1293      AC Q14EB0
#=GS Q14EB0/1238-1293      OS Human coronavirus HKU1 (isolate N2)
#=GS Q14EB0/1238-1293      DE Spike glycoprotein
#=GS Q14EB0/1238-1293      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Human coronavirus HKU1; 
#=GS A0A3G2KXL1/1238-1293  AC A0A3G2KXL1
#=GS A0A3G2KXL1/1238-1293  OS Human coronavirus HKU1
#=GS A0A3G2KXL1/1238-1293  DE Spike glycoprotein
#=GS A0A3G2KXL1/1238-1293  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Human coronavirus HKU1; 
#=GS Q02385/1253-1315      AC Q02385
#=GS Q02385/1253-1315      OS Murine hepatitis virus strain JHMV / variant CL-2
#=GS Q02385/1253-1315      DE Spike glycoprotein
#=GS Q02385/1253-1315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P11225/1111-1174      AC P11225
#=GS P11225/1111-1174      OS Murine hepatitis virus strain JHM
#=GS P11225/1111-1174      DE Spike glycoprotein
#=GS P11225/1111-1174      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P22432/1253-1315      AC P22432
#=GS P22432/1253-1315      OS Murine hepatitis virus strain 4
#=GS P22432/1253-1315      DE Spike glycoprotein
#=GS P22432/1253-1315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q9J3E7/1201-1263      AC Q9J3E7
#=GS Q9J3E7/1201-1263      OS Murine hepatitis virus
#=GS Q9J3E7/1201-1263      DE Spike glycoprotein
#=GS Q9J3E7/1201-1263      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS I7B987/1112-1174      AC I7B987
#=GS I7B987/1112-1174      OS Murine coronavirus
#=GS I7B987/1112-1174      DE Spike protein
#=GS I7B987/1112-1174      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS C0KYT1/1253-1315      AC C0KYT1
#=GS C0KYT1/1253-1315      OS Murine coronavirus RA59/SJHM
#=GS C0KYT1/1253-1315      DE Spike protein
#=GS C0KYT1/1253-1315      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q77NQ7/1237-1300      AC Q77NQ7
#=GS Q77NQ7/1237-1300      OS Murine hepatitis virus strain 2
#=GS Q77NQ7/1237-1300      DE Spike glycoprotein
#=GS Q77NQ7/1237-1300      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P90210/1237-1300      AC P90210
#=GS P90210/1237-1300      OS Murine hepatitis virus
#=GS P90210/1237-1300      DE Spike protein
#=GS P90210/1237-1300      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q77NN1/1237-1300      AC Q77NN1
#=GS Q77NN1/1237-1300      OS Murine hepatitis virus strain ML-11
#=GS Q77NN1/1237-1300      DE Spike glycoprotein
#=GS Q77NN1/1237-1300      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS Q5ICX2/1239-1301      AC Q5ICX2
#=GS Q5ICX2/1239-1301      OS Murine hepatitis virus
#=GS Q5ICX2/1239-1301      DE Spike
#=GS Q5ICX2/1239-1301      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Murine coronavirus; 
#=GS P25194/1244-1305      AC P25194
#=GS P25194/1244-1305      OS Bovine coronavirus strain vaccine
#=GS P25194/1244-1305      DE Spike glycoprotein
#=GS P25194/1244-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q8JSP8/1231-1291      AC Q8JSP8
#=GS Q8JSP8/1231-1291      OS Porcine hemagglutinating encephalomyelitis virus (strain IAF-404)
#=GS Q8JSP8/1231-1291      DE Spike glycoprotein
#=GS Q8JSP8/1231-1291      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q8BB25/1231-1291      AC Q8BB25
#=GS Q8BB25/1231-1291      OS Porcine hemagglutinating encephalomyelitis virus (strain 67N)
#=GS Q8BB25/1231-1291      DE Spike glycoprotein
#=GS Q8BB25/1231-1291      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P25193/1244-1305      AC P25193
#=GS P25193/1244-1305      OS Bovine coronavirus strain Quebec
#=GS P25193/1244-1305      DE Spike glycoprotein
#=GS P25193/1244-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P15777/1244-1305      AC P15777
#=GS P15777/1244-1305      OS Bovine coronavirus Mebus
#=GS P15777/1244-1305      DE Spike glycoprotein
#=GS P15777/1244-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P25190/1245-1305      AC P25190
#=GS P25190/1245-1305      OS Bovine coronavirus strain F15
#=GS P25190/1245-1305      DE Spike glycoprotein
#=GS P25190/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q91A26/1245-1305      AC Q91A26
#=GS Q91A26/1245-1305      OS Bovine enteric coronavirus (strain 98TXSF-110-ENT)
#=GS Q91A26/1245-1305      DE Spike glycoprotein
#=GS Q91A26/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q9QAR5/1245-1305      AC Q9QAR5
#=GS Q9QAR5/1245-1305      OS Bovine coronavirus (strain LSU-94LSS-051)
#=GS Q9QAR5/1245-1305      DE Spike glycoprotein
#=GS Q9QAR5/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P25191/1244-1305      AC P25191
#=GS P25191/1244-1305      OS Bovine coronavirus strain L9
#=GS P25191/1244-1305      DE Spike glycoprotein
#=GS P25191/1244-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q8V436/1245-1305      AC Q8V436
#=GS Q8V436/1245-1305      OS Bovine respiratory coronavirus (strain 98TXSF-110-LUN)
#=GS Q8V436/1245-1305      DE Spike glycoprotein
#=GS Q8V436/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q9QAQ8/1245-1305      AC Q9QAQ8
#=GS Q9QAQ8/1245-1305      OS Bovine coronavirus (strain OK-0514-3)
#=GS Q9QAQ8/1245-1305      DE Spike glycoprotein
#=GS Q9QAQ8/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS P25192/1245-1305      AC P25192
#=GS P25192/1245-1305      OS Bovine coronavirus LY-138
#=GS P25192/1245-1305      DE Spike glycoprotein
#=GS P25192/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS B7U2P4/1245-1305      AC B7U2P4
#=GS B7U2P4/1245-1305      OS White-tailed deer coronavirus US/OH-WD470/1994
#=GS B7U2P4/1245-1305      DE Spike protein
#=GS B7U2P4/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS A0A0K2RVL1/1245-1305  AC A0A0K2RVL1
#=GS A0A0K2RVL1/1245-1305  OS Equine coronavirus
#=GS A0A0K2RVL1/1245-1305  DE Spike protein
#=GS A0A0K2RVL1/1245-1305  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q2QKN3/1231-1291      AC Q2QKN3
#=GS Q2QKN3/1231-1291      OS Porcine hemagglutinating encephalomyelitis virus
#=GS Q2QKN3/1231-1291      DE Spike glycoprotein
#=GS Q2QKN3/1231-1291      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS Q06BD7/1245-1305      AC Q06BD7
#=GS Q06BD7/1245-1305      OS Bovine coronavirus isolate Alpaca
#=GS Q06BD7/1245-1305      DE Spike protein
#=GS Q06BD7/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS G5CJB1/1242-1303      AC G5CJB1
#=GS G5CJB1/1242-1303      OS Human coronavirus OC43
#=GS G5CJB1/1242-1303      DE Spike glycoprotein
#=GS G5CJB1/1242-1303      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS E5RPZ2/1245-1305      AC E5RPZ2
#=GS E5RPZ2/1245-1305      OS Equine coronavirus
#=GS E5RPZ2/1245-1305      DE Spike protein
#=GS E5RPZ2/1245-1305      DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Embecovirus; Betacoronavirus 1; 
#=GS A0A2H4MXF2/1224-1284  AC A0A2H4MXF2
#=GS A0A2H4MXF2/1224-1284  OS Rodent coronavirus
#=GS A0A2H4MXF2/1224-1284  DE Spike glycoprotein
#=GS A0A2H4MXF2/1224-1284  DR ORG; Viruses; Nidovirales; Cornidovirineae; Coronaviridae; Coronavirinae; Rodent coronavirus; 
#=GF SQ 36
P36334/1234-1295              KEELDQWFKNQTSVAPDLSLDY--INVTFLDLQVEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
P11224/1201-1263              -EELDKWFKNQTSIAPDLSLDFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
Q0ZME7/1237-1293              ------WFKNHTSIAPNLTFNS-HINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVK
A0A2H4MZ26/1251-1312          KEELDQWFKNQTSIAPDLSLDY--INVTFLDLQDEMDRLQEAIRVLNDSYINLKEIGTYEMYVK
H9AA65/1245-1305              -EELDQWFKNQTSVAPDLSLGY--INVTFLDIQDEMNRLQEALKVLNQSYINLKDIGTYEYYVK
Q14EB0/1238-1293              -------FKNHTSIAPNLTFNS-HINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVK
A0A3G2KXL1/1238-1293          -------FKNHTSIAPNLTFNS-HINATFLDLYYEMNVIQESIKSLNSSFINLKEIGTYEMYVK
Q02385/1253-1315              -EELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
P11225/1111-1174              KEELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
P22432/1253-1315              -EELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
Q9J3E7/1201-1263              -EELDKWFKNQTSIAPDLSLDFEKLNVTLLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
I7B987/1112-1174              -EELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
C0KYT1/1253-1315              -EELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTYEMNRIQDAIKKLNESYINLKEVGTYEMYVK
Q77NQ7/1237-1300              KEELDKWFKNQTSIAPDLSLDFEKLNVTLLDLTDEMNRIQDAIKKLNESYINLKDVGTYEMYVK
P90210/1237-1300              KEELDKWFKNQTSIAPDLSLDFEKLNVTLLDLTDEMNRIQDAIKKLNESYINLKDVGTYEMYVK
Q77NN1/1237-1300              KEELDKWFKNQTSIAPDLSLDFEKLNVTLLDLTDEMNRIQDAIKKLNESYINLKDVGTYEMYVK
Q5ICX2/1239-1301              -EELDKWFKNQTSIAPDLSLDFEKLNVTFLDLTDEMSRIRDAIKKLNESYINLKEVGTYEMYVK
P25194/1244-1305              KEELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
Q8JSP8/1231-1291              -EELYQWFKNQSSLAPDLSFDY--INVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYEYYVK
Q8BB25/1231-1291              -EELYQWFKNQSSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
P25193/1244-1305              KEELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
P15777/1244-1305              KEELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
P25190/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKLLNQSYINLKDIGTYEYYVK
Q91A26/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
Q9QAR5/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
P25191/1244-1305              KEELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
Q8V436/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
Q9QAQ8/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
P25192/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
B7U2P4/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
A0A0K2RVL1/1245-1305          -EELDQWFKNQTSVAPDLSLDY--INVTFLNLQDEMNRLQESIKVLNQSYINLKDIGTYEYYVK
Q2QKN3/1231-1291              -EELYQWFKNQSSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNHSYINLKDIGTYEYYVK
Q06BD7/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLDLQDEMNRLQEAIKVLNQSYINLKDIGTYEYYVK
G5CJB1/1242-1303              KEELDQWFKNQTSVAPDLSLDY--INVTFLDLQVEMNRLQEAIKVLNHSYINLKDIGTYEYYVK
E5RPZ2/1245-1305              -EELDQWFKNQTSVAPDLSLDY--INVTFLNLQDEMNRLQESIKVLNQSYINLKDIGTYEYYVK
A0A2H4MXF2/1224-1284          -EELDQWFKNQTSVAPDLSLDY--INVTFLDLRDEMDRLQEAIKVLNNSYINLKEIGTYEMYVK
#=GC scorecons                0555546999789799797775016979798845998668778849949899997799995999
#=GC scorecons_70             ______***************___********__**********_**_************_***
#=GC scorecons_80             _______******_*******____*******__***__**_**_**_******_*****_***
#=GC scorecons_90             _______***_**_**_*_______*_*_***__***__*__**_**_*_****__****_***
//