# STOCKHOLM 1.0
#=GF ID 1.20.1250.40/FF/000008
#=GF DE RNA polymerase II, Rpb4, core protein
#=GF AC 1.20.1250.40/FF/000008
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 75.329
#=GS A0A1I9LMM7/1-117  AC A0A1I9LMM7
#=GS A0A1I9LMM7/1-117  OS Arabidopsis thaliana
#=GS A0A1I9LMM7/1-117  DE RNA polymerase II, Rpb4, core protein
#=GS A0A1I9LMM7/1-117  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS F4J1Q7/1-114      AC F4J1Q7
#=GS F4J1Q7/1-114      OS Arabidopsis thaliana
#=GS F4J1Q7/1-114      DE RNA polymerase II, Rpb4, core protein
#=GS F4J1Q7/1-114      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q7XJ61/1-117      AC Q7XJ61
#=GS Q7XJ61/1-117      OS Arabidopsis thaliana
#=GS Q7XJ61/1-117      DE At5g62950
#=GS Q7XJ61/1-117      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS A0A384KRS8/1-117  AC A0A384KRS8
#=GS A0A384KRS8/1-117  OS Arabidopsis thaliana
#=GS A0A384KRS8/1-117  DE Uncharacterized protein
#=GS A0A384KRS8/1-117  DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS Q9FM02/29-144     AC Q9FM02
#=GS Q9FM02/29-144     OS Arabidopsis thaliana
#=GS Q9FM02/29-144     DE Dbj|BAA95748.1
#=GS Q9FM02/29-144     DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana; 
#=GS D7TX84/1-118      AC D7TX84
#=GS D7TX84/1-118      OS Vitis vinifera
#=GS D7TX84/1-118      DE Uncharacterized protein
#=GS D7TX84/1-118      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS A5BVZ2/21-139     AC A5BVZ2
#=GS A5BVZ2/21-139     OS Vitis vinifera
#=GS A5BVZ2/21-139     DE Uncharacterized protein
#=GS A5BVZ2/21-139     DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Vitales; Vitaceae; Viteae; Vitis; Vitis vinifera; 
#=GS B9H4L3/1-119      AC B9H4L3
#=GS B9H4L3/1-119      OS Populus trichocarpa
#=GS B9H4L3/1-119      DE Uncharacterized protein
#=GS B9H4L3/1-119      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Malpighiales; Salicaceae; Saliceae; Populus; Populus trichocarpa; 
#=GS K7LRI2/1-119      AC K7LRI2
#=GS K7LRI2/1-119      OS Glycine max
#=GS K7LRI2/1-119      DE Uncharacterized protein
#=GS K7LRI2/1-119      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS D7MND0/1-114      AC D7MND0
#=GS D7MND0/1-114      OS Arabidopsis lyrata subsp. lyrata
#=GS D7MND0/1-114      DE Uncharacterized protein
#=GS D7MND0/1-114      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis lyrata; Arabidopsis lyrata subsp. lyrata; 
#=GS A0A0B2PQ37/6-99   AC A0A0B2PQ37
#=GS A0A0B2PQ37/6-99   OS Glycine soja
#=GS A0A0B2PQ37/6-99   DE Uncharacterized protein
#=GS A0A0B2PQ37/6-99   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS K7MPS7/1-116      AC K7MPS7
#=GS K7MPS7/1-116      OS Glycine max
#=GS K7MPS7/1-116      DE Uncharacterized protein
#=GS K7MPS7/1-116      DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS I1N287/1-88       AC I1N287
#=GS I1N287/1-88       OS Glycine max
#=GS I1N287/1-88       DE Uncharacterized protein
#=GS I1N287/1-88       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS K7MSM7/3-99       AC K7MSM7
#=GS K7MSM7/3-99       OS Glycine max
#=GS K7MSM7/3-99       DE Uncharacterized protein
#=GS K7MSM7/3-99       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GS A0A0B2RS00/2-94   AC A0A0B2RS00
#=GS A0A0B2RS00/2-94   OS Glycine soja
#=GS A0A0B2RS00/2-94   DE Uncharacterized protein
#=GS A0A0B2RS00/2-94   DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine soja; 
#=GS K7LVG7/3-94       AC K7LVG7
#=GS K7LVG7/3-94       OS Glycine max
#=GS K7LVG7/3-94       DE Uncharacterized protein
#=GS K7LVG7/3-94       DR ORG; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja; Glycine max; 
#=GF SQ 16
A0A1I9LMM7/1-117          M-KIMKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKSADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDREID--TDGILELVKDLLP
F4J1Q7/1-114              ----MKANAGALTNFELLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVNKSADKCKDFKLAKAEILNIINLWPSSIVELLPIIENLDDREID--TDGILELVKDLLP
Q7XJ61/1-117              M-KIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREID--TDGILELVKDLLP
A0A384KRS8/1-117          M-KIVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREID--TDGILELVKDLLP
Q9FM02/29-144             --ASVKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESINKFADKCKDFKLAKAEILNIINLRPSSIVELLPIIENLDDREID--TDGILELVKDLLP
D7TX84/1-118              M-KIKKANAGALTNFEVLDFLRSRGAAKDPTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNIINIRPASPVEIDPIIEESEKRMGEG-IEDLIEMVITVLP
A5BVZ2/21-139             XPKQKKANAGALTNFEVLDFLRSRGAAKDXTRVIAPIAASEFKVYDYLVESAACNQTRESINELLEKCKKYDLAKAEILNIINIRPASPVEIDPIIEESEKRMGEG-IEDLIEMVITVLP
B9H4L3/1-119              M-KIKNPNAGALTNFEVLDFLRSRGASRDVSRVLAPVAASEYKVYDYLVETPACNLTREKINEFLERCKKYDLAKAELLNIINIRPSQTVEIYTIIEEMDSRFEMPIIEELVELVEEVLP
K7LRI2/1-119              M-KILEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVSQSEYKVYDYLVDTAASVQTRESINEFLRSVKQHDLAKAEVLNILNIGPAAEVELYPILEESDERFGDEGVTEIVELVKKTLP
D7MND0/1-114              ----MKANAGALTNFEVLDFLNSRGASKDTTRVIAPIARSEYKVYDYLVETAASTQTRESVTKFADKCKDFKVAKAEILNIINLRPSSIVELLPIIETPDDRKIN--TDGILELVKDLLP
A0A0B2PQ37/6-99           --HSLEGNAGALTNFEVLDFLRAKEASKDPTRGIAKVAQSEYKVYDYLVDSAASVQTRESINEFLTSVKQHDLTKTEVLNILNIGPAADFELYPVI------------------------
K7MPS7/1-116              ----LECNAGALTNFEVLDFLRAKGASKDPTRVIAKVAQSEYKVYDYLVDTAASVQTRESINEFLTSVKQHDLAKAEVLNILNIGPAAEVELYPIIEDCDERFGDEGVLEIVELVKKTLP
I1N287/1-88               ------GNAGALTNFEVLDFLQAKGASKDPTRVIAKVAQFEYKAYDYLVDIAASVHTRESINEFLTSVKQHDLAKAEALNILNIGPAADFELYP--------------------------
K7MSM7/3-99               --HSLEGNAGALTNFEVLDFLRAKGASKDPTRVIAKVAPSEYKVYDYLVDTAPSVHTRESINEFLTSIKQHDLAKVEVLNILNIGPAADFELYPVIIKI---------------------
A0A0B2RS00/2-94           ----LEGNAGALTNFEVLDFLQAKGASKDPTRVIAKVAQSEYKAYDYLVDIAASVHTRESINEFLTSVKQHDLAKAEALNILNIGPAADFELYPVSI-----------------------
K7LVG7/3-94               --HSLEGNAGALTNFEVLDFLRAKEASKDPTRGIAKVAQSEYKVYDYLVDSAASVQTRESINEFLTSVKQHDLTKTEVLNILNIGPAADFELYP--------------------------
#=GC scorecons            002234599999999979999567797894897895784798979999975887469998786654549556879795999696596536974855321323112002222232321233
#=GC scorecons_70         _______**************__******_*****_**_***********_***_*********____*___*****_******_*____**_*__________________________
#=GC scorecons_80         _______**************___*****_**_**__*_**********__**___******______*___***_*_***_*__*____**_*__________________________
#=GC scorecons_90         _______*********_****____*_**_**_**__*__***_*****__**___***__*______*___*_*_*_***_*__*____*__*__________________________
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