# STOCKHOLM 1.0 #=GF ID 1.20.1070.10/FF/000324 #=GF DE Uncharacterized protein #=GF AC 1.20.1070.10/FF/000324 #=GF TP FunFam #=GF DR CATH: v4.3 #=GF DR DOPS: 95.647 #=GS C3YKM8/1-293 AC C3YKM8 #=GS C3YKM8/1-293 OS Branchiostoma floridae #=GS C3YKM8/1-293 DE Uncharacterized protein #=GS C3YKM8/1-293 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS F6ZA54/16-313 AC F6ZA54 #=GS F6ZA54/16-313 OS Ciona intestinalis #=GS F6ZA54/16-313 DE Uncharacterized protein #=GS F6ZA54/16-313 DR ORG; Eukaryota; Metazoa; Chordata; Tunicata; Ascidiacea; Enterogona; Phlebobranchia; Cionidae; Ciona; Ciona intestinalis; #=GS C3ZWZ4/19-331 AC C3ZWZ4 #=GS C3ZWZ4/19-331 OS Branchiostoma floridae #=GS C3ZWZ4/19-331 DE Uncharacterized protein #=GS C3ZWZ4/19-331 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3YFW0/1-296 AC C3YFW0 #=GS C3YFW0/1-296 OS Branchiostoma floridae #=GS C3YFW0/1-296 DE Uncharacterized protein #=GS C3YFW0/1-296 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZNK4/1-276 AC C3ZNK4 #=GS C3ZNK4/1-276 OS Branchiostoma floridae #=GS C3ZNK4/1-276 DE Uncharacterized protein #=GS C3ZNK4/1-276 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZNM1/17-303 AC C3ZNM1 #=GS C3ZNM1/17-303 OS Branchiostoma floridae #=GS C3ZNM1/17-303 DE Uncharacterized protein #=GS C3ZNM1/17-303 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZNK5/1-261 AC C3ZNK5 #=GS C3ZNK5/1-261 OS Branchiostoma floridae #=GS C3ZNK5/1-261 DE Uncharacterized protein #=GS C3ZNK5/1-261 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZEF5/1-317 AC C3ZEF5 #=GS C3ZEF5/1-317 OS Branchiostoma floridae #=GS C3ZEF5/1-317 DE Uncharacterized protein #=GS C3ZEF5/1-317 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZEF4/26-319 AC C3ZEF4 #=GS C3ZEF4/26-319 OS Branchiostoma floridae #=GS C3ZEF4/26-319 DE Uncharacterized protein #=GS C3ZEF4/26-319 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZEF3/1-282 AC C3ZEF3 #=GS C3ZEF3/1-282 OS Branchiostoma floridae #=GS C3ZEF3/1-282 DE Uncharacterized protein #=GS C3ZEF3/1-282 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3Z582/1-272 AC C3Z582 #=GS C3Z582/1-272 OS Branchiostoma floridae #=GS C3Z582/1-272 DE Uncharacterized protein #=GS C3Z582/1-272 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3YKB3/1-296 AC C3YKB3 #=GS C3YKB3/1-296 OS Branchiostoma floridae #=GS C3YKB3/1-296 DE Uncharacterized protein #=GS C3YKB3/1-296 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3YKB9/1-292 AC C3YKB9 #=GS C3YKB9/1-292 OS Branchiostoma floridae #=GS C3YKB9/1-292 DE Uncharacterized protein #=GS C3YKB9/1-292 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3YKB8/1-247 AC C3YKB8 #=GS C3YKB8/1-247 OS Branchiostoma floridae #=GS C3YKB8/1-247 DE Uncharacterized protein #=GS C3YKB8/1-247 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3YFC3/1-261 AC C3YFC3 #=GS C3YFC3/1-261 OS Branchiostoma floridae #=GS C3YFC3/1-261 DE Uncharacterized protein #=GS C3YFC3/1-261 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZHF7/2-313 AC C3ZHF7 #=GS C3ZHF7/2-313 OS Branchiostoma floridae #=GS C3ZHF7/2-313 DE Uncharacterized protein #=GS C3ZHF7/2-313 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3ZHF6/1-283 AC C3ZHF6 #=GS C3ZHF6/1-283 OS Branchiostoma floridae #=GS C3ZHF6/1-283 DE Uncharacterized protein #=GS C3ZHF6/1-283 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GS C3Y1L9/3-321 AC C3Y1L9 #=GS C3Y1L9/3-321 OS Branchiostoma floridae #=GS C3Y1L9/3-321 DE Uncharacterized protein #=GS C3Y1L9/3-321 DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; #=GF SQ 18 C3YKM8/1-293 ------------------------VVAPVMQCAIGITGLVGNGLIMYVIFKYASMKTAANVYVLNLAVADFVYCLTF-PIW-TIDYILR--MWIFGRAMCKIVRSIFNINTFASIYILTMMSIERNSAVLHPVRNRTD---RSLKKAKIICGSIWVFALLCC-LPYIIFADTVDFG----------G--VCLFNWH------GSAETKEWWRSVNAIYLLAMTFLVPLCVMIPNYVLIYRKLLNT--DVI---PPEFRRAVRSRHRVTRMVIVVVLTFIVCWLPLHIGNVIRFVAG--HNVNAT-------VWYFLNVIADVNTCVNPFLYALHGENFRMTLKRTL-CGSKCCPKRFR--------- F6ZA54/16-313 --------STTTEGYSTLIPEYARIMIIVVYMFVFVFGTIGNACVIVVMMIVPKFKTPTDIFILNLSFADLLFSSSL-IFWAVEQIYEM--VWFLGVFMCKALSAVTLINLHASVLFLAAMAVNRCKTVRRKRQSSSY---GDIIKAKVSCVIIWLVAAIISSLAWFRKTEIVPSPAG--------NVTRCLWRMP------DTGDRYVWERIY-FGSRVLMGFTLPLIVIIISYVLVVMRLRHT-----R-QQVTVKSSMQM--RVTITVFAVIAAFVICWLPNHVTSIIHALTL-GENEEKRKDLHTYELNLISNCLVAFNSCINPILYAWLNK------------------------------- C3ZWZ4/19-331 -------NETYIPSPYSWDVIIYNIVAPVIQCAIGITGLIGNGLIIYVIIKYSTMKTVPNMYVLNLAVSDFLYCLTF-PIW-AADYILR--VWIFGRAMCKIVRSIFNVNTFASIYFLTVMSIERYYAILHPVRNMQN---RSLKKAKIIGGCVWTVALVCS-LPYIVFAETDYLG----------GVPVCMFKWP------ANVQNEDWWRGANAVYLTALAFFIPLCIMVPNYVLIYRRLQNT--DVV---PPESRRALRSRHRVTRMVIVVVVIFVICWLPLHVGNIIRFVFG--FKVNAT-------VWYFLNVIADVNSCVNPFLYALLGQNFRATLKRTL-CGSSCCPDSFRQ-------- C3YFW0/1-296 ------------------------IVVPVIQCAIGITGLIGNGLIIYVIIKYSTMKTVPNMYVLNLAVSDFLYCLTF-PIW-AADYILR--VWIFGRAMCKIVRSIFNVNTFASIYFLTVMSIERYYAILHPVRNMQN---RSLKKAKMIGGCVWTVALMCS-LPYIVFAETDYLG----------GSTICMFKWP------ANVQNEDWWRGANAVYLTALAFLIPLCIMVPNYVLIYRKLRNT--DVI---PPESRRALRSRHRVTRMVIVVVVIFVISWLPLHVGNIISSVFG--FNVNAT-------VWYFLNVIADVNSCVNPFLYALLGQNFRASLKRTL-CGSSCCPDSCRQ-------- C3ZNK4/1-276 ---------------------------TVIHLILAAMGAVANALVIYILLRKPKMRTYPNIFVFSLALSDLVFCAVAIPLSWAVNLVNGYHGW-----LAHVSSVSYDTCTLVGALCLTTMSIERYEAVSDPIGHVQR---SSVKRGWLTIAGFWVGSILVS-ILFYVFVILPAGQ-----------------EDV------RSANLRNLNLAS-KLYSFIVMFAVPLLIAVIFYMLLFKALKQR--RDI---PGRARSTARSHGRITRMVTAVVVAYVVSWSPAHILGLVTVSFSPYNIIALAL------ALRVCFVLQVINAVTNPFLYALLGERFGFYIREMM-C------------------- C3ZNM1/17-303 ---------------SL----EKTVWFPTVHLILAAVGSFANALVIYIIAKKPKMRTYPNIFVLNLAAADFVFCTVATPLTWVVILLERFGGW-----LQHVTFVSYDMCSFVSVLCLTTLSIERYQAISDPIGHMDR---SSRKRAWLINTSLWVLALVLS-IFGYIFIFLPATS-----------------RDM------QSQELINKDLAT-TLFSFLLSFVIPLVIIVIFYVLLFKTLRQN--RGL---PVGSRSDIKSRNRVTRMVTAVVVAFVVSWLPGHIINLVYVSNAMMDNKALSY------GTWACFMLQIVNSVSNPFLYALLGERFGFYIRGIM-CRKG---------------- C3ZNK5/1-261 -----------------------------VHLVLATIGSVFNALVIYIIAKKPKMRTYPNIFVLNLAVADFVFCTVATPLIWTVVLLEELGGW-----LQHVFFVSYVACAIVSVLCLTTLSIERYQAISDPIGHMDR---SSRKRAWIINAGLWVLAIALS-ILGYVFILSSAT------------------------------------FIP-TLVSFLITFVIPLLVISVSYGLLFKTLRQN--RGL---PVGSRSDIKSRNRVTRMVTAVVVAFVVSWLPEHILNLLYISSTKADNKALSY------GTWACFMLQIVNSVSNPFLYALLGERFGFYIRDIM-C------------------- C3ZEF5/1-317 ------------MNPTS----TTVLVFVYISQLVAIVGFLANLLVLYIIIRYPDMRTVPNVFVLNLALADASYCLSI-TFDTVAQIHDS--GWIFGRDMCVAGYVMSYGSSHCSVFFLTAISFERYKAITDPIAQ-QG---VCMKKAWITCAAVWCAAALSV-TPIFVDPNFFVYVIENHSTGGNITRSSCKFLHP------PAVSTTLYGKLR-VVYNFAVTYAFPTCIMINLYSVIWRKLRQT-----P-PSTQCKQATESRNKVTKMVVAVVSFFVVALSLWQINTLLLEFKL-VTHIPDA-------LFELGLLLYVTNSAINPVFYALLGERFGSYARKTM-CCWRVGRKDGRSAQNV---- C3ZEF4/26-319 ----------WPQPPSP----THELVFVCIGQLVAGIGLLANLFVIYIIARYPAMRTVPNVVVLNLAAADALYCWAG-PLYTVYALHVD--GWILGNAMCNVYFIMGYISAFCSVWFLTALSIERYKAVTDPIGHSQK---ISQKKAWGASVVVWF------------------AYYSCESVGKIHHVTKCDVFAP------EGIPEELFNKLR-GIYSFTVNFAVPLCIIIPLYVIIWRKLREK-----K-PSTLSMHLIRSRNRVTRMVAAVVVFFVIALLPWHTYWILQYFKL-IQNMPYG-------LYDVCLALYVANSTVNPFFYALLGDKFRRYINILF-CKWRLCG------------- C3ZEF3/1-282 ------------------------------------IGLLANFLVIYIIARYPAMRTVPNVFVLNLAAADALYCCVT-PLYTVYALHVD---WILGNAMCNVYFIMEYVSAFCSVWFLTALSIERYKAVTDPIGHSQK---ISQKKAWVASVVVWFFGLVAA-SPTLVFVKTAVHAFSCESGGKIHHVTQCDVLAP------EGIPEELLNKLR-GMYGFTITFVVPLCIIIPLYVIIWRKLREK-----K-PSTLSMHLIRSRNRVTRMVAAVVVFFVIALLPWHTYWILQYFSL-IQNVPHG-------LYDACLALYVANSAVNPFFYALMGDKFRRYINIVF-C------------------- C3Z582/1-272 ------------------------------------IGTVANLVVVYTIARNRKMKTVPNVFVLNLAIADFIYCSMFLPFWDTANLSVH--GWIYGRPMCNVVVAVCNISVNSSILFLTAMSIERYRAVADPIGHVQR---QSLKKTWLISGAIWVAAVLMS-LPFAVFTTTKNTNI------GGIIHTTCQPEAP------GNMDFWQYNLLI-SMWRFLAWFAVPLLIITPLYALLFKKLRNE--GVL---LHIGRETIQSRNRVTRMVAVVVFIFILSWLPFHVYNLVIFFSPKTGTYPEA-------VNYLVAALSSANSTVNPFLYALLGEKFR---------------------------- C3YKB3/1-296 ------------------------MVWSSVELVIAAIGVFANGLVVYVIARNADMRTVPNIYVLNLSVADMLYCSLFVPFLSGYVLNSR--GWIFGQAMCVINKGIYAATVNASILFLTAMSFERFRAVSNPLRRRGRG--SGTKRTLLTCAGLWVLAVILS-LPSTIFAKVAVAY----------DMQHCSIWIPTGDLKTSKQATVDFIKAL-FMYRFVAWCVLPLFILVPTYVLLYKRIKEG--MEIA-VAMQARRRAENRNRVTKMVTVIVLFFFFSWSPLHVTNIIDHYGAYPYSVPVN-------VLSFVGMLSSANSAVNPFLYALFGQRFRLHIKRIL--------------------- C3YKB9/1-292 --------------------------------ILAAIGIIANSLVIYVIARYREMRTVPNVFVLNLALADLLYCCEFVPIWNAQYFLPN--KWIFGQAMCTITRALYGICGNASILFVIAMSIERYQAVADPIGHHQR---SSKKRTWLISAGLWMVSVIFS-IHIIAFSKVETYG----------THKGCKSDPT------SVAPYEDYMKGI-LIYRFVAWCILPLSILVPCYSRLYYKLHHGDHDVIQADSSAAGSTAKSRNRVTRMVTVVVAVFTVSWMPLHIVYLVKYGFH-LYSVPEG---HHDPLELFVAMLSSTNPMINPFLYALLGDKFRIYMKKVL-CCGR---------------G C3YKB8/1-247 ----------------------------FVELVLAVIGVLANSLVIFVIARYREMRTVPNVFVLNIAVADFLYCIEFVPIWNAYGFLPN--GWIFGLAMCVITRAIYGICGNASILFMIAMSIERYQAVANPIVHHQR---SSKKRTWIISAGLWMVSVIFT-IHIIVFTKVETNG----------TRKACKSDPT------SIVPYEDYMKGI-LIYRFVAWCVLPLSILVPCYARLYYKLHHG--RVIQ--AAPSKSTVKSRNHVTRMVTVVVAVFAVSWMPMHIVYMVKYSFH-LYSVPE---------------------------------------------------------------- C3YFC3/1-261 ------------------------------------------------------MRTVPNVYIFNMALADGIYCLMG-PLWMSFRVIDW--IWLPGSIVCRTMHYLQFMTMFGSSCFLTILSVQRYRSVVHPFQYMHR---RTVPRAVMYSGLVWLAVLVLS-VPCGVLSHLVVQD----------SVQVCVYASP------SGTDVQTFGVIL-QSYVLVLAFLVPLCVVTPHYMLLQNHMR---------GAGQTTSVFKARNRVTRMVLVVSAVFLVTRLPLHLSRLTLTASRGVASLPDS-------LGFILRLLYDLDPVLNPLVYVFQGVKYRAAVVQACRCRAKINSK------------ C3ZHF7/2-313 ---------------------ALRNVLTALGSTFTVVGIAGNLLVMFIILRFPRMRTVSNVYLFSIALSDLNLVMVA-PII-IHFYRNG--RWTFGAGSCEAESCIKFTSMFAGFFLVSAFNYQRYRAIVNPIETRQR---QSLKRTALICLSLFLLALVAN-LPFCVTSDVVEGIV------KNETVTVCRYFWP------DWGNIPEHVEKAHRLYFTCLGFLLPFCLNFTLYVLIIRKLHSQ--DAFR-SAAAGKHVKDS-TTVTKMAVMVTVSFVICVGPFHMYNFISAVSD--IYIPEY-------VGMWTCVLTFGNSALDPIIYALMGTNFRDCIKQLF-CRRPLAGETQKQLNDSDILH C3ZHF6/1-283 -----------------------------------AVGIAGNILVMFIILRFPRMRTVPNVYLFCIAFSDLVILTVA-PII-IHFYRVG--RWVFGPGACEAESCIKFTSVFASFFLVSAFNVERYQVIMHPLETRHR---QSLRKAALICLSMFLLALIAN-LPFCVTSVVVEAVV------DGRNATVCRYFWP------EWNSVPEFAQKARRLYLTSLGFLLPLCLNFTLYVLIIRKLRDQ--DAFR-SAAVGKRGKDSATAVTKMAAFVTATFIVCTGPYHMYNFISAVSD--IHLSEF-------VGMWTKQLALGNSALDPIIYALIGTNFRECIKQLF-CRRR---------------- C3Y1L9/3-321 HLSIRMGNDSYSNNTSSFQEDPFFTFSTVFKILLCVIGLLGNGLVMYVIMRYPKLHNAPNLYILNLSLAQFLYYVRE-VIQ-VAFMVIG--PWTFGVAMCKVYRFVWAVSILAGSAFLAILSVERHQAVVNPVRSWLDHMAQERKVAFRNACIVWGIVAFLC-VPHLVFASVTNVG----------AMIDCYYVAV------GSLDAHTFNTIR-IFYSVGLGFVVPLIIMVPHYVLLIVKLREV-------RAGNRDGGSNALGRVSRLVVVLVTVFVVFNLPGHVVNILTSVFG-SVNLSTS-------TQWFTYALQDVSPCLNPVLCAVVPENFRSAVFKTL-CTWPFRPKN----------H #=GC scorecons 0000000000000000000000001101121123234734473665656353437785786667777468456633306531432433300394462366352334324434474457555757974773585442440003536663444335743544340442254323222200000000002222612224000000322322332333024634343745974645539566345853300112101432344334654688677458643856444828524552333201244433000000042233236223653467557764634651233223051110000000000000000 #=GC scorecons_70 _____________________________________*___*__*___*_____***_*********_**__*_____*_____________*______*_____________*___*___*_***_**__*____________***_______*______________________________________________________________*_____*__**_*____*______*____________________*__******__**__*_*___*_*________________________________*___*___**__**__*__*_____________________________ #=GC scorecons_80 _____________________________________*___*____________*_*_**______*__*______________________*____________________*_______*_**__**__*______________________*_______________________________________________________________________**______*______*________________________**_**__*___*_____*_*_________________________________________*__**___________________________________ #=GC scorecons_90 ________________________________________________________*__*_________*______________________*_______________________________*_____________________________________________________________________________________________________*_______*_______________________________**_________*_____*_*_________________________________________________________________________________ //