# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/000059
#=GF DE Nuclear Hormone Receptor family
#=GF AC 1.10.565.10/FF/000059
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 53.355
#=GS Q9N4B8/320-506_539-594  AC Q9N4B8
#=GS Q9N4B8/320-506_539-594  OS Caenorhabditis elegans
#=GS Q9N4B8/320-506_539-594  DE Nuclear hormone receptor family member nhr-41
#=GS Q9N4B8/320-506_539-594  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q3V5L2/320-506_539-594  AC Q3V5L2
#=GS Q3V5L2/320-506_539-594  OS Caenorhabditis elegans
#=GS Q3V5L2/320-506_539-594  DE Nuclear Hormone Receptor family
#=GS Q3V5L2/320-506_539-594  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS U4PEU7/218-404_437-492  AC U4PEU7
#=GS U4PEU7/218-404_437-492  OS Caenorhabditis elegans
#=GS U4PEU7/218-404_437-492  DE Nuclear Hormone Receptor family
#=GS U4PEU7/218-404_437-492  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS U4PRQ4/252-438_471-526  AC U4PRQ4
#=GS U4PRQ4/252-438_471-526  OS Caenorhabditis elegans
#=GS U4PRQ4/252-438_471-526  DE Nuclear Hormone Receptor family
#=GS U4PRQ4/252-438_471-526  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS U4PRT9/196-382_415-470  AC U4PRT9
#=GS U4PRT9/196-382_415-470  OS Caenorhabditis elegans
#=GS U4PRT9/196-382_415-470  DE Nuclear Hormone Receptor family
#=GS U4PRT9/196-382_415-470  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS U4PMI0/236-422_455-510  AC U4PMI0
#=GS U4PMI0/236-422_455-510  OS Caenorhabditis elegans
#=GS U4PMI0/236-422_455-510  DE Nuclear Hormone Receptor family
#=GS U4PMI0/236-422_455-510  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS H3F0T5/104-325          AC H3F0T5
#=GS H3F0T5/104-325          OS Pristionchus pacificus
#=GS H3F0T5/104-325          DE Uncharacterized protein
#=GS H3F0T5/104-325          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS A8XJ00/259-454          AC A8XJ00
#=GS A8XJ00/259-454          OS Caenorhabditis briggsae
#=GS A8XJ00/259-454          DE Protein CBR-NHR-41
#=GS A8XJ00/259-454          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GF SQ 8
Q9N4B8/320-506_539-594          SSSSISDDSGPIYTSERARFEISVPL--NTQNPRNHQYISEITTRLLFLTVHFVKDSR-VSLRTSTMEGLLKSKWCDLYILALMQ--TADKIKLGQLLDNLTNQMAMGMECGQYSAEKFEKISEQMQRLLQLSQLFASRELTAVEYAYLKMISFTAQDLPSSMA-SPETRSVNQMASQELFEYV--------------------SSSKSTQNHRFSRILQLLPCLRWFDPATIVEIFFSGLIGPMSIETIIPFVLQMNLMSFFDQKMEL
Q3V5L2/320-506_539-594          SSSSISDDSGPIYTSERARFEISVPL--NTQNPRNHQYISEITTRLLFLTVHFVKDSR-VSLRTSTMEGLLKSKWCDLYILALMQ--TADKIKLGQLLDNLTNQMAMGMECGQYSAEKFEKISEQMQRLLQLSQLFASRELTAVEYAYLKMISFTAQDLPSSMA-SPETRSVNQMASQELFEYV--------------------SSSKSTQNHRFSRILQLLPCLRWFDPATIVEIFFSGLIGPMSIETIIPFVLQMNLMSFFDQKMEL
U4PEU7/218-404_437-492          SSSSISDDSGPIYTSERARFEISVPL--NTQNPRNHQYISEITTRLLFLTVHFVKDSR-VSLRTSTMEGLLKSKWCDLYILALMQ--TADKIKLGQLLDNLTNQMAMGMECGQYSAEKFEKISEQMQRLLQLSQLFASRELTAVEYAYLKMISFTAQDLPSSMA-SPETRSVNQMASQELFEYV--------------------SSSKSTQNHRFSRILQLLPCLRWFDPATIVEIFFSGLIGPMSIETIIPFVLQMNLMSFFDQKMEL
U4PRQ4/252-438_471-526          SSSSISDDSGPIYTSERARFEISVPL--NTQNPRNHQYISEITTRLLFLTVHFVKDSR-VSLRTSTMEGLLKSKWCDLYILALMQ--TADKIKLGQLLDNLTNQMAMGMECGQYSAEKFEKISEQMQRLLQLSQLFASRELTAVEYAYLKMISFTAQDLPSSMA-SPETRSVNQMASQELFEYV--------------------SSSKSTQNHRFSRILQLLPCLRWFDPATIVEIFFSGLIGPMSIETIIPFVLQMNLMSFFDQKMEL
U4PRT9/196-382_415-470          SSSSISDDSGPIYTSERARFEISVPL--NTQNPRNHQYISEITTRLLFLTVHFVKDSR-VSLRTSTMEGLLKSKWCDLYILALMQ--TADKIKLGQLLDNLTNQMAMGMECGQYSAEKFEKISEQMQRLLQLSQLFASRELTAVEYAYLKMISFTAQDLPSSMA-SPETRSVNQMASQELFEYV--------------------SSSKSTQNHRFSRILQLLPCLRWFDPATIVEIFFSGLIGPMSIETIIPFVLQMNLMSFFDQKMEL
U4PMI0/236-422_455-510          SSSSISDDSGPIYTSERARFEISVPL--NTQNPRNHQYISEITTRLLFLTVHFVKDSR-VSLRTSTMEGLLKSKWCDLYILALMQ--TADKIKLGQLLDNLTNQMAMGMECGQYSAEKFEKISEQMQRLLQLSQLFASRELTAVEYAYLKMISFTAQDLPSSMA-SPETRSVNQMASQELFEYV--------------------SSSKSTQNHRFSRILQLLPCLRWFDPATIVEIFFSGLIGPMSIETIIPFVLQMNLMSFFDQKMEL
H3F0T5/104-325                  PSNM---EDGPIFNSERSSFKLPLP---NSTDL-SMSFICETASRLLFLSVHWMKDAKHTGLKSSTIESLMKSKWCDVFVLGLMQCSSSSSIQLGPILNSINDHLISCNRMGELSSSKLTSVQEEISRLLQISLLFDTAKLSSIEYAYLKLISFTSSDLPSPHSVSSDARSTNQVACHELYDHLLSSWPHSSDDSSLEESDVLSTSSQSAAIERYSRLLQLLPTLRY-----------DG-----------------------------
A8XJ00/259-454                  SSSSISDDSGPIYNMERSRFDISPPVSWNPQNA-NQQCISEITTRLLFLSVHFVKDSR-VTIRNITSEQLLKSKWCDLYIIALMQ--TADKINLPQLLETLTQQLALGLECGQFSPEKFEKFREQMNRIMQLSHLFAARDMSSVEYAYLKMISFTTQDIPNLLT-TSETQSTNQLASQELFEYV--------------------SSSKSSLLHH-----------------------------QMSNEHI-------------------
#=GC scorecons                  69654447599975699559566492009456416455969666999995995699670546746949496999999677669990066559496569546646654535596594596555496649679694995455755799999969999459696444065766959959669977760000000000000000000069969433564553555552552111111111112511124424241111111111111111111
#=GC scorecons_70               _*_____*_****__**__*_*__*___*__*______*_*_*_*****_**_***_*___**__*_*_************_***______*_*__**__*__**______**_*__**____***_******_**____*__************__****____*_****_**_*_*******_____________________****____*_______________________________________________________
#=GC scorecons_80               _*_______****__**__*____*___*_________*_*___*****_**__**_________*_*_*_******_*___***______*_*___*_____________*__*__*_____*___*__*_*_**________******_****__*_*__________*_**_*__***________________________**_*____________________________________________________________
#=GC scorecons_90               _*_______***___**__*____*___*_________*_*___*****_**__**_________*_*_*_******_____***______*_*___*_____________*__*__*_____*___*__*_*_**________******_****__*_*__________*_**_*__**_________________________**_*____________________________________________________________
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