# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/000048
#=GF DE Nuclear hormone receptor family member nhr-35
#=GF AC 1.10.565.10/FF/000048
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 72.016
#=GS P91829/94-344          AC P91829
#=GS P91829/94-344          OS Caenorhabditis elegans
#=GS P91829/94-344          DE Nuclear hormone receptor family member nhr-69
#=GS P91829/94-344          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS P91829/94-344          DR GO; GO:0000122; GO:0005515; GO:0005634; GO:0046332; GO:1990239; 
#=GS Q17771/182-448         AC Q17771
#=GS Q17771/182-448         OS Caenorhabditis elegans
#=GS Q17771/182-448         DE Nuclear hormone receptor family member nhr-35
#=GS Q17771/182-448         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS H3FJJ0/46-172_208-336  AC H3FJJ0
#=GS H3FJJ0/46-172_208-336  OS Pristionchus pacificus
#=GS H3FJJ0/46-172_208-336  DE Uncharacterized protein
#=GS H3FJJ0/46-172_208-336  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Diplogasteromorpha; Diplogasteroidea; Neodiplogasteridae; Pristionchus; Pristionchus pacificus; 
#=GS G0M855/126-392         AC G0M855
#=GS G0M855/126-392         OS Caenorhabditis brenneri
#=GS G0M855/126-392         DE CBN-NHR-35 protein
#=GS G0M855/126-392         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS E3LEF7/128-390         AC E3LEF7
#=GS E3LEF7/128-390         OS Caenorhabditis remanei
#=GS E3LEF7/128-390         DE CRE-NHR-35 protein
#=GS E3LEF7/128-390         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A2G5SSJ9/126-392     AC A0A2G5SSJ9
#=GS A0A2G5SSJ9/126-392     OS Caenorhabditis nigoni
#=GS A0A2G5SSJ9/126-392     DE Uncharacterized protein
#=GS A0A2G5SSJ9/126-392     DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8XK15/128-393         AC A8XK15
#=GS A8XK15/128-393         OS Caenorhabditis briggsae
#=GS A8XK15/128-393         DE Protein CBR-NHR-35
#=GS A8XK15/128-393         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A261CSE3/103-365     AC A0A261CSE3
#=GS A0A261CSE3/103-365     OS Caenorhabditis latens
#=GS A0A261CSE3/103-365     DE Uncharacterized protein
#=GS A0A261CSE3/103-365     DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A2G5STH0/126-392     AC A0A2G5STH0
#=GS A0A2G5STH0/126-392     OS Caenorhabditis nigoni
#=GS A0A2G5STH0/126-392     DE Uncharacterized protein
#=GS A0A2G5STH0/126-392     DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS G0P1R0/94-344          AC G0P1R0
#=GS G0P1R0/94-344          OS Caenorhabditis brenneri
#=GS G0P1R0/94-344          DE Uncharacterized protein
#=GS G0P1R0/94-344          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS G0MFM1/107-360         AC G0MFM1
#=GS G0MFM1/107-360         OS Caenorhabditis brenneri
#=GS G0MFM1/107-360         DE Uncharacterized protein
#=GS G0MFM1/107-360         DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis brenneri; 
#=GS A0A2G5VFD1/103-352     AC A0A2G5VFD1
#=GS A0A2G5VFD1/103-352     OS Caenorhabditis nigoni
#=GS A0A2G5VFD1/103-352     DE Uncharacterized protein
#=GS A0A2G5VFD1/103-352     DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A8WWW7/94-343          AC A8WWW7
#=GS A8WWW7/94-343          OS Caenorhabditis briggsae
#=GS A8WWW7/94-343          DE Protein CBR-NHR-69
#=GS A8WWW7/94-343          DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5VFH6/94-343      AC A0A2G5VFH6
#=GS A0A2G5VFH6/94-343      OS Caenorhabditis nigoni
#=GS A0A2G5VFH6/94-343      DE Uncharacterized protein
#=GS A0A2G5VFH6/94-343      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2G5VFI4/94-346      AC A0A2G5VFI4
#=GS A0A2G5VFI4/94-346      OS Caenorhabditis nigoni
#=GS A0A2G5VFI4/94-346      DE Uncharacterized protein
#=GS A0A2G5VFI4/94-346      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GF SQ 15
P91829/94-344                  ------KEDLIDQLVAAETLCQQLRSSVIKNTSSLAPYDC----GKVKWNYEDARAATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQADQAALLKGGAASIIVLGVAYRSICLTVENTICLANDTLLPKEHATQVGDIN---CVVG-------RIIDEIVNPMRRLNMDLIEYVALKAILFFNPVVREINDQS--PVENARYAFLRSLQRRC-TDKALENMEDESMDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILND-----------
Q17771/182-448                 -PVEDEYDQLLESLLKSEMTIQSLRDTVITQTGNVEYTTK----SKNRLSHTD-RTATLNDVLKSMHSQLLLVIEWAKTLPEFKQLSGADQAVLLKNFAGQHVTLCVAYRSV--GANDALKLLNDLYIPRASKTTPHLKE---YVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLFNPVAPGLSNHAVNLVLNARRKIFAAFEKYVRVNKPLE-------TTRVGDLTFFILTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYGEDRQDQ-
H3FJJ0/46-172_208-336          -------QGLLSSLLRSEASIQSLRDSVIKQTETVEYSTRPEEPQKSDMSGCG-RAATVNDIFTSIHSQLLLVIEWAKTLPPFAALSTDDQTALLRHFASQQLVLCVAYRSI--NAANTLKLINDSYIPRVTRRGDN-----------YARDCERVLDELVAPMRFLKIDETEFVAMKACILFNPVARGLSSATVMSVLATRRKIFAALESHCRRQRPDD-------PNRMGDLTFFILGPLQSLANCVSDDVLVSKLSGAARIDLLMEELILSDAE--EQKFMLP
G0M855/126-392                 -P-NDEYDHLLESLLKSEMTIQSLRETVITQTGNVEYTTK----AKNRLANAD-STATLNDVLKSMHSQLLLVIEWAKTLPEFTQLSGADQAVLLKNFAGQHVTLCVAYRSV--GASDALKLLNDLYIPRASKTTPHLKE---YVDGFYLKDCEKVMDQLVEPMRFLKLDNKEFVALKACVLFNPVAPGLSSHACNLVLSARRKIFSAFERYVKATKPLE-------TTRVGDLTFFILTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYAEDRQDSD
E3LEF7/128-390                 -P--DEFEELLENLLKSELTIQSLRDTVITQTGNVEYTTK----SKNRLANAD-STATLNDVLKSMHSQLLLVIEWAKTLPEFTQLSSADQAILLKNFAGQHVTLCVAYRSV--GAADALKLLNDLYIPRASKTNPHVKE---YVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVFFNPVAPGLSNHAVNLVLNARRKIFTAFERYIRTNKPME-------LTRVGDLTFFILTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYVEDRH---
A0A2G5SSJ9/126-392             SP-NEDYEQLLESLLKSEMTIQSLRETVITQTGNVEYTTK----SKNRLANAD-STATLNDVLKSMHSQLLLVIEWAKTIPEFTQLSGADQAVLLKNFAGQHVTLCVAYRSV--GANDALKLLNDLYIPRASKTTPHLKE---YVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLFNPVAPGLSPPACNLVLSARRKFFAAFEKYVKVNKPLE-------TTRVGDLTFFLLTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYGEDRQDQ-
A8XK15/128-393                 -P-NEDYEQLLESLLKSEMTIQSLRETVITQTGNVEYTTK----SKNRLANAD-STATLNDVLKSMHSQLLLVIEWAKTIPEFTQLSGADQAVLLKNFAGQHVTLCVAYRSV--GANDALKLLNDLYIPRASKTTPHLKE---YVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLFNPVAPGLSPPACNLVLSARRKFFAAFEKYVKVNKPLE-------TTRVGDLTFFLLTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYGEDRQDQ-
A0A261CSE3/103-365             -P--DEFEELLENLLKSELTIQSLRDTVITQTGNVEYTTK----SKNRLANAD-STATLNDVLKSMHSQLLLVIEWAKTLPEFTQLSSADQAILLKNFAGQHVTLCVAYRSV--GAADALKLLNDLYIPRASKTNPHVKE---YVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVFFNPVAPGLSNHAVNLVLNARRKIFTAFERYIRTNKPME-------LTRVGDLTFFILTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYVEDRH---
A0A2G5STH0/126-392             SP-NEDYEQLLESLLKSEMTIQSLRETVITQTGNVEYTTK----SKNRLANAD-STATLNDVLKSMHSQLLLVIEWAKTIPEFTQLSGADQAVLLKNFAGQHVTLCVAYRSV--GANDALKLLNDLYIPRASKTTPHLKE---YVDGFYLRDCEKVMDQLVEPMRFLKLDNKEFVALKACVLFNPVAPGLSPPACNLVLSARRKFFAAFEKYVKVNKPLE-------TTRVGDLTFFLLTPLSVLSKSISEDIMFTKVSGVARIDVLMEELILAETDYGEDRQDQ-
G0P1R0/94-344                  ------KQDLIEQLVEAENLCQQLRSSVIRNTSSLAPYDC----GKVKWNYEDARAATLDDIGKSIHQQLVLFIEWAKSLPQFTFLAQLDKAALLKGGAASIIVLGVAYRSIILTVENTICLANDTLLGKEHATQVGDIN---CVVG-------RIIDEIVNPMRRLNMDLYEYVALKAILFFNPVVRDCTDQD--AVETARYAVLRSFQKRC-VDKALENMEDDTFDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILND-----------
G0MFM1/107-360                 ---VNGKQDLIEQLVEAENLCQQLRSSVIRNTSSLAPYDC----GKVKWNYEDARAATLDDIGKSIHQQLVLFIEWAKSLPQFTFLAQLDKAALLKGGAASIIVLGVAYRSIILTVENTICLANDTLLGKEHATQVGDIN---CVVG-------RIIDEIVNPMRRLNMDLYEYVALKAILFFNPVVRDCTDQD--AVETARYAVLRSFQKRC-VDKALENMEDDTFDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILND-----------
A0A2G5VFD1/103-352             ------KEDLIDQLVAAEQMCQQLRSSVIKNTSSLAPYDC----GKVKWNYEDARSATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQVDQAALLKGGAASIIVLGVAYRSIHLGMDDTICLANDTLLPKEHATQVGDIN---CVVG-------RILAELVNPMRRLDMDLVEYVALKAILFFNPVVRECNDQT--SVENARFACLRSLQRRC-TDKAIVNQEDDSQDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILN------------
A8WWW7/94-343                  ------KEDLIDQLVQAEQMCQQLRSSVIKNTSSLAPYDC----GKVKWNYEDARSATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQVDQAALLKGGAASIIVLGVAYRSIHLGMDDTICLANDTLLPKEHATQVGDIN---CVVG-------RILAELVNPMRRLDMDLVEYVALKAILFFNPVVRECNDQT--SVENARYACLRSLQRRC-TDKAIVNQEDDSQDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILN------------
A0A2G5VFH6/94-343              ------KEDLIDQLVAAEQMCQQLRSSVIKNTSSLAPYDC----GKVKWNYEDARSATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQVDQAALLKGGAASIIVLGVAYRSIHLGMDDTICLANDTLLPKEHATQVGDIN---CVVG-------RILAELVNPMRRLDMDLVEYVALKAILFFNPVVRECNDQT--SVENARFACLRSLQRRC-TDKAIVNQEDDSQDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILN------------
A0A2G5VFI4/94-346              ------KEDLIDQLVAAEQMCQQLRSSVIKNTSSLAPYDC----GKVKWNYEDARSATLDDIGKSIHQQLVLFIEWAKSLPQFSFLAQVDQAALLKGGAASIIVLGVAYRSIHLGMDDTICLANDTLLPKEHATQVGDINHFSCVVG-------RILAELVNPMRRLDMDLVEYVALKAILFFNPVVRECNDQT--SVENARFACLRSLQRRC-TDKAIVNQEDDSQDCRSGKL-LLLLPSLQAIAQQLVEDVQLARLFGLVNVDSLMEELILN------------
#=GC scorecons                 0100113659664964693459599569955955654454000059464544815599869747969599695999996795954964497859985495546595999997016546664959945677455744433500057371212222776667959994956943979989956699996554545511494589454646666541458655101111045959592666956955665465897455765956579599999995312102121000
#=GC scorecons_70              _______*_***_**__*___*_**__**__*__*__________*_*____*___******_****_****_*****_**_*__*___***_***__*___*_*_******_____***_*_**__***___*__________*_*_______**__***_***_*_**__*******__*****___________*__**___*__**______*____________*_*_*_****__*__*_____***___**_*___**_*******_____________
#=GC scorecons_80              _________*___*___*___*_**__**__*_____________*______*___***_*__**_*_**_*_*****_**_*__*___***_***__*_____*_*****__________*_**___*____*__________*_*____________**_***_*__*__*******___****___________*__**______________*____________*_*_*____*__*________**_______*____*_*******_____________
#=GC scorecons_90              _________*___*___*___*_**__**__*_____________*__________***_*___*_*_**_*_*****__*_*__*___*_*_***__*_____*_*****__________*_**___________________________________*_***_*__*__*_*****___****___________*__**______________*____________*_*_*____*__*________**_______*____*_*******_____________
//