# STOCKHOLM 1.0
#=GF ID 1.10.565.10/FF/000045
#=GF DE Nuclear Hormone Receptor family
#=GF AC 1.10.565.10/FF/000045
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 89.779
#=GS O16890/167-345      AC O16890
#=GS O16890/167-345      OS Caenorhabditis elegans
#=GS O16890/167-345      DE Nuclear Hormone Receptor family
#=GS O16890/167-345      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS O17611/174-389      AC O17611
#=GS O17611/174-389      OS Caenorhabditis elegans
#=GS O17611/174-389      DE Nuclear hormone receptor family member nhr-100
#=GS O17611/174-389      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS Q21006/348-585      AC Q21006
#=GS Q21006/348-585      OS Caenorhabditis elegans
#=GS Q21006/348-585      DE Nuclear hormone receptor family member nhr-34
#=GS Q21006/348-585      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS A8XL62/193-414      AC A8XL62
#=GS A8XL62/193-414      OS Caenorhabditis briggsae
#=GS A8XL62/193-414      DE Protein CBR-NHR-138
#=GS A8XL62/193-414      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A2G5TZK0/191-415  AC A0A2G5TZK0
#=GS A0A2G5TZK0/191-415  OS Caenorhabditis nigoni
#=GS A0A2G5TZK0/191-415  DE Uncharacterized protein
#=GS A0A2G5TZK0/191-415  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS K7H665/325-562      AC K7H665
#=GS K7H665/325-562      OS Caenorhabditis japonica
#=GS K7H665/325-562      DE Uncharacterized protein
#=GS K7H665/325-562      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS E3NGW2/203-441      AC E3NGW2
#=GS E3NGW2/203-441      OS Caenorhabditis remanei
#=GS E3NGW2/203-441      DE Uncharacterized protein
#=GS E3NGW2/203-441      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A0A1I7UXA2/192-430  AC A0A1I7UXA2
#=GS A0A1I7UXA2/192-430  OS Caenorhabditis tropicalis
#=GS A0A1I7UXA2/192-430  DE Uncharacterized protein
#=GS A0A1I7UXA2/192-430  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A260ZZR0/216-454  AC A0A260ZZR0
#=GS A0A260ZZR0/216-454  OS Caenorhabditis latens
#=GS A0A260ZZR0/216-454  DE Uncharacterized protein
#=GS A0A260ZZR0/216-454  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A8XL63/191-415      AC A8XL63
#=GS A8XL63/191-415      OS Caenorhabditis briggsae
#=GS A8XL63/191-415      DE Protein CBR-NHR-100
#=GS A8XL63/191-415      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A8Y2L7/226-464      AC A8Y2L7
#=GS A8Y2L7/226-464      OS Caenorhabditis briggsae
#=GS A8Y2L7/226-464      DE Protein CBR-NHR-34
#=GS A8Y2L7/226-464      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS K7H666/332-569      AC K7H666
#=GS K7H666/332-569      OS Caenorhabditis japonica
#=GS K7H666/332-569      DE Uncharacterized protein
#=GS K7H666/332-569      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS A0A2G5TZG0/247-485  AC A0A2G5TZG0
#=GS A0A2G5TZG0/247-485  OS Caenorhabditis nigoni
#=GS A0A2G5TZG0/247-485  DE Uncharacterized protein
#=GS A0A2G5TZG0/247-485  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A2G5TZA4/298-535  AC A0A2G5TZA4
#=GS A0A2G5TZA4/298-535  OS Caenorhabditis nigoni
#=GS A0A2G5TZA4/298-535  DE Uncharacterized protein
#=GS A0A2G5TZA4/298-535  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A1I7UXA3/204-442  AC A0A1I7UXA3
#=GS A0A1I7UXA3/204-442  OS Caenorhabditis tropicalis
#=GS A0A1I7UXA3/204-442  DE Uncharacterized protein
#=GS A0A1I7UXA3/204-442  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS E3NUT1/203-441      AC E3NUT1
#=GS E3NUT1/203-441      OS Caenorhabditis remanei
#=GS E3NUT1/203-441      DE Uncharacterized protein
#=GS E3NUT1/203-441      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GF SQ 16
O16890/167-345              -------------------------------------------------WLENTLPEYQMLVH-ADKNVLMSLSILSVCWLTSAFESYKFECDGILFADGSWFPRDRKLRSQVCSRCVTYFGCTVDLFLTQVVYRIKELKIDETEITLLKAICHLQPSPQLSRHAIEIVANGQTKYKKVLCEYIRSNTDG--YMDASIRLCKILQILPELDALAKLEEDNGLLVSLSGIE----------------L
O17611/174-389              ---EVLQAIKDPSQVCARTKINWNSHSRPLITIEALRFNWCRTFTLTIDWFE-TLPEYRALID-DDKELLVKFSLMPVGWLWYAYKSYEYRCDGIVFVDGSWFPRDKTIQQQVCPTCVLYYGRITESFMADVVNSMKELEMDETEMVLLKAICHLQPDYRLTRRGNDVISTGREKYKRALCEYIRMKSNG--FMDASFRLCKLMQILPVVDILGKYEDESALL------------------------
Q21006/348-585              ------AAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCIDYAK-IMKDYQELSP-TDQFTLLRNRVISVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMREMDMDEGEFVILKALILFRAHRRLSEEGRAHIKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A8XL62/193-414              --------MVDPGKVAKRNKLEWSKAHR-LANTRDITVTWCRTFLWFHDYMN-SFPDLCNLNI-ADRTTLLKLRFAPVSWLLYAWQSYRLGIDGVTFTNDAWYPNDADLQEKVEKPVSDYYQKCTSTMMNELVNKMKLIEMTEEEYSMMLAIILFRRDYRLTHEANQLIENFGNMYLSALIEYLSNHMPC--TFDEAIFTGGSL-IPERYDSLERLATFIGFITSCQTTT-----------SPSSQS
A0A2G5TZK0/191-415          MDCAIGPAIENPANVCERTEVLFHNSNPPLITFDTLRFNWCRTFTLTIDWFA-TLPEYNMLGNIADKKLLVTMALMPVGWLWYAYMAYVTKTEGIKFIDGSWFPSDETLQQSVCSKCVGYYGKITKAFMADVVSRMKELQMDETEMCLLKAIITTKPSHLYSQFGRIEMTKGSMNYRSTLCEYIRGKCGG-SYPDAAVRVAKLLQIIPIVDVLGKFEDESAILVSLE--------------------
K7H665/325-562              ------AAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDWAK-IIKDYQELSH-GDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKRLDPGCNHYFSILSEHLMEDLVTPMRDMDMDEGEFVILKALILFRPHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
E3NGW2/203-441              -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYQELSH-TDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A0A1I7UXA2/192-430          -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYKELSP-TDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHSSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A0A260ZZR0/216-454          -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYQELSH-TDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A8XL63/191-415              MDCAIGPAIENPANVCERTEVLFHNSNPPLITFDTLRFNWCRTFTLTIDWFA-TLPEYNMLGNIADKKLLVTMALMPVGWLWYAYMAYVTKTEGIKFIDGSWFPSDETLQQSVCSKCVGYYGKITKAFMADVVSRMKELQMDETEMCLLKAIITTKPSHLYSQFGRIEMTKGSMNYRSTLCEYIRGKCGG-SYPDAAVRVAKLLQIIPIVDVLGKFEDESAILVSLE--------------------
A8Y2L7/226-464              -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYQELSH-SDQFTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
K7H666/332-569              ------AAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDWAK-IIKDYQELSH-GDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKRLDPGCNHYFSILSEHLMEDLVTPMRDMDMDEGEFVILKALILFRPHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A0A2G5TZG0/247-485          -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYQELSH-SDQFTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A0A2G5TZA4/298-535          ------AAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYQELSH-SDQFTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
A0A1I7UXA3/204-442          -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYKELSP-TDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHSSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
E3NUT1/203-441              -----EAAFRQPGVVAKRTPPRWLALER-LTTLEDVHIAWCRSFVLCLDYAK-IMKDYQELSH-TDQYTLLRNRVVSVNWLCHTYKTFKAGCDGVALVNGSWYPRDKELQKQLDPGCNHYFRILSEHLMEDLVIPMRDMDMDEGEFVILKALILFRAHRRLSEEGRAHVKRVRDKYIEALYQHVQHQHRHFSSVQTSMRISKILLLLPSIEHLSQQEDDNVQFLALFNLANLNGLPYELHSSIKQHI
#=GC scorecons              0000013543364364465333433334064534444446664635336544055577439440496359643455694994567457445579746567797959548745645474397434553584669348756587959446879664565445675465336454445934695676535444134455657547583667357394637655435445222211111111111212222
#=GC scorecons_70           ___________*__*__*___________*_________***_*____*_______**__*____*___*_______*_**__**__*____***_*_******_*__**__*___*__**_______*_***__**___***_*___****________**__*__________*___*_***____________*_*__*_*_*_*__*_*___**_____________________________
#=GC scorecons_80           _________________________________________________________*__*____*___*_______*_**______*____**_____*****_*__**______*__**_______*___*__*____***_*___***________________________*___*_____________________*_*___*____*___*______________________________
#=GC scorecons_90           ____________________________________________________________*____*___*_______*_**____________*_______*_*_*_____________*____________*_________*_*_____*________________________*___*_______________________*________*__________________________________
//