# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000471
#=GF DE Homeobox domain protein
#=GF AC 1.10.10.60/FF/000471
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 25.442
#=GS P52906/110-177      AC P52906
#=GS P52906/110-177      OS Caenorhabditis elegans
#=GS P52906/110-177      DE Homeobox protein unc-30
#=GS P52906/110-177      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis elegans; 
#=GS P52906/110-177      DR GO; GO:0005634; GO:0033563; GO:0040012; GO:0043565; GO:0045944; GO:0097154; 
#=GS W6NE16/99-165       AC W6NE16
#=GS W6NE16/99-165       OS Haemonchus contortus
#=GS W6NE16/99-165       DE Homeobox protein
#=GS W6NE16/99-165       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Haemonchidae; Haemonchus; Haemonchus contortus; 
#=GS A0A016ULS9/99-165   AC A0A016ULS9
#=GS A0A016ULS9/99-165   OS Ancylostoma ceylanicum
#=GS A0A016ULS9/99-165   DE Uncharacterized protein
#=GS A0A016ULS9/99-165   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GS A0A183FEM8/42-108   AC A0A183FEM8
#=GS A0A183FEM8/42-108   OS Heligmosomoides polygyrus bakeri
#=GS A0A183FEM8/42-108   DE Homeobox protein
#=GS A0A183FEM8/42-108   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Heligmosomatidae; Heligmosomoides; Heligmosomoides polygyrus; Heligmosomoides polygyrus bakeri; 
#=GS A0A0D8XTI8/99-165   AC A0A0D8XTI8
#=GS A0A0D8XTI8/99-165   OS Dictyocaulus viviparus
#=GS A0A0D8XTI8/99-165   DE Homeobox domain protein
#=GS A0A0D8XTI8/99-165   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Dictyocaulidae; Dictyocaulinae; Dictyocaulus; Dictyocaulus viviparus; 
#=GS A0A2G9TUC2/75-141   AC A0A2G9TUC2
#=GS A0A2G9TUC2/75-141   OS Teladorsagia circumcincta
#=GS A0A2G9TUC2/75-141   DE Homeobox domain protein
#=GS A0A2G9TUC2/75-141   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Haemonchidae; Teladorsagia; Teladorsagia circumcincta; 
#=GS W2SWX0/99-165       AC W2SWX0
#=GS W2SWX0/99-165       OS Necator americanus
#=GS W2SWX0/99-165       DE Homeobox domain protein
#=GS W2SWX0/99-165       DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Bunostominae; Necator; Necator americanus; 
#=GS A0A2A2KVP5/122-189  AC A0A2A2KVP5
#=GS A0A2A2KVP5/122-189  OS Diploscapter pachys
#=GS A0A2A2KVP5/122-189  DE Uncharacterized protein
#=GS A0A2A2KVP5/122-189  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Diploscapter; Diploscapter pachys; 
#=GS A0A3P7XRX2/42-108   AC A0A3P7XRX2
#=GS A0A3P7XRX2/42-108   OS Heligmosomoides polygyrus
#=GS A0A3P7XRX2/42-108   DE Homeobox protein
#=GS A0A3P7XRX2/42-108   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Trichostrongyloidea; Heligmosomatidae; Heligmosomoides; Heligmosomoides polygyrus; 
#=GS A0A2H2IJX9/110-177  AC A0A2H2IJX9
#=GS A0A2H2IJX9/110-177  OS Caenorhabditis japonica
#=GS A0A2H2IJX9/110-177  DE Homeobox protein
#=GS A0A2H2IJX9/110-177  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis japonica; 
#=GS E3M6C6/111-178      AC E3M6C6
#=GS E3M6C6/111-178      OS Caenorhabditis remanei
#=GS E3M6C6/111-178      DE Homeobox protein
#=GS E3M6C6/111-178      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis remanei; 
#=GS A8WQQ9/109-177      AC A8WQQ9
#=GS A8WQQ9/109-177      OS Caenorhabditis briggsae
#=GS A8WQQ9/109-177      DE Homeobox protein
#=GS A8WQQ9/109-177      DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis briggsae; 
#=GS A0A261AND4/110-177  AC A0A261AND4
#=GS A0A261AND4/110-177  OS Caenorhabditis latens
#=GS A0A261AND4/110-177  DE Uncharacterized protein
#=GS A0A261AND4/110-177  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis latens; 
#=GS A0A1I7TR28/108-176  AC A0A1I7TR28
#=GS A0A1I7TR28/108-176  OS Caenorhabditis tropicalis
#=GS A0A1I7TR28/108-176  DE Homeobox protein
#=GS A0A1I7TR28/108-176  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis tropicalis; 
#=GS A0A2G5U657/109-177  AC A0A2G5U657
#=GS A0A2G5U657/109-177  OS Caenorhabditis nigoni
#=GS A0A2G5U657/109-177  DE Homeobox protein
#=GS A0A2G5U657/109-177  DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis; Caenorhabditis nigoni; 
#=GS A0A016UL70/99-165   AC A0A016UL70
#=GS A0A016UL70/99-165   OS Ancylostoma ceylanicum
#=GS A0A016UL70/99-165   DE Uncharacterized protein
#=GS A0A016UL70/99-165   DR ORG; Eukaryota; Metazoa; Nematoda; Chromadorea; Strongylida; Ancylostomatoidea; Ancylostomatidae; Ancylostomatinae; Ancylostoma; Ancylostoma ceylanicum; 
#=GF SQ 16
P52906/110-177              ----QKPRRQRTHFTSHQLTELENWFSRNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKRERNYVID
W6NE16/99-165               ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
A0A016ULS9/99-165           ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
A0A183FEM8/42-108           ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
A0A0D8XTI8/99-165           ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
A0A2G9TUC2/75-141           ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
W2SWX0/99-165               ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
A0A2A2KVP5/122-189          -GKASKPRRQRTHFTSQQLTELENYFARNRYPDMATREEIAMWISLTEPRVRVWFKNRRAKWRKRERSY---
A0A3P7XRX2/42-108           ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
A0A2H2IJX9/110-177          ----QKPRRQRTHFTSHQLTELENWFSRNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYVID
E3M6C6/111-178              ----QKPRRQRTHFTSHQLTELENWFARNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKRERNYVID
A8WQQ9/109-177              GGKAQKPRRQRTHFTSHQLTELENWFARNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKRERNY---
A0A261AND4/110-177          ----QKPRRQRTHFTSHQLTELENWFARNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKRERNYVID
A0A1I7TR28/108-176          GGKTQKPRRQRTHFTSHQLTELENWFARNRYPDMACREEIAIWINLSEPRVRVWFKNRRAKWRKRERNY---
A0A2G5U657/109-177          GGKAQKPRRQRTHFTSHQLTELENWFARNRYPDMACREEIAVWISLTEPRVRVWFKNRRAKWRKRERNY---
A0A016UL70/99-165           ----HKPRRQRTHFTSHQLTELENWFARNRYPDMATREEIAIWISLTEPRVRVWFKNRRAKWRKRERNYV-D
#=GC scorecons              011059999999999989999999797999999995999996997979999999999999999999979202
#=GC scorecons_70           _____******************************_*********************************___
#=GC scorecons_80           _____******************************_*****_***************************___
#=GC scorecons_90           _____***********_*******_*_********_*****_**_*_********************_*___
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