# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000369
#=GF DE Intestine specific homeobox
#=GF AC 1.10.10.60/FF/000369
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 73.457
#=GS A1A546/72-151       AC A1A546
#=GS A1A546/72-151       OS Mus musculus
#=GS A1A546/72-151       DE Intestine-specific homeobox
#=GS A1A546/72-151       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS A1A546/72-151       DR GO; GO:0001227; GO:0005634; GO:0006357; GO:0043565; GO:1901738; GO:1904479; 
#=GS Q2M1V0/77-158       AC Q2M1V0
#=GS Q2M1V0/77-158       OS Homo sapiens
#=GS Q2M1V0/77-158       DE Intestine-specific homeobox
#=GS Q2M1V0/77-158       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Homo; Homo sapiens; 
#=GS Q2M1V0/77-158       DR GO; GO:0000981; 
#=GS B1Q2M1/72-151       AC B1Q2M1
#=GS B1Q2M1/72-151       OS Mus musculus
#=GS B1Q2M1/72-151       DE MCG14995
#=GS B1Q2M1/72-151       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Mus; Mus; Mus musculus; 
#=GS W4YLW5/69-144       AC W4YLW5
#=GS W4YLW5/69-144       OS Strongylocentrotus purpuratus
#=GS W4YLW5/69-144       DE Uncharacterized protein
#=GS W4YLW5/69-144       DR ORG; Eukaryota; Metazoa; Echinodermata; Echinozoa; Echinoidea; Euechinoidea; Echinacea; Echinoida; Strongylocentrotidae; Strongylocentrotus; Strongylocentrotus purpuratus; 
#=GS C3ZM10/139-203      AC C3ZM10
#=GS C3ZM10/139-203      OS Branchiostoma floridae
#=GS C3ZM10/139-203      DE Uncharacterized protein
#=GS C3ZM10/139-203      DR ORG; Eukaryota; Metazoa; Chordata; Cephalochordata; Branchiostomidae; Branchiostoma; Branchiostoma floridae; 
#=GS W5NIR5/94-159       AC W5NIR5
#=GS W5NIR5/94-159       OS Lepisosteus oculatus
#=GS W5NIR5/94-159       DE Uncharacterized protein
#=GS W5NIR5/94-159       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Actinopterygii; Actinopteri; Neopterygii; Holostei; Semionotiformes; Lepisosteidae; Lepisosteus; Lepisosteus oculatus; 
#=GS G1KL01/1-69         AC G1KL01
#=GS G1KL01/1-69         OS Anolis carolinensis
#=GS G1KL01/1-69         DE Uncharacterized protein
#=GS G1KL01/1-69         DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Lepidosauria; Squamata; Iguania; Dactyloidae; Anolis; Anolis carolinensis; 
#=GS F7FWM8/68-131       AC F7FWM8
#=GS F7FWM8/68-131       OS Monodelphis domestica
#=GS F7FWM8/68-131       DE Uncharacterized protein
#=GS F7FWM8/68-131       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Didelphimorphia; Didelphidae; Didelphinae; Monodelphis; Monodelphis domestica; 
#=GS F1P729/70-149       AC F1P729
#=GS F1P729/70-149       OS Canis lupus familiaris
#=GS F1P729/70-149       DE Intestine specific homeobox
#=GS F1P729/70-149       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis; Canis lupus; Canis lupus familiaris; 
#=GS A0A1S3ANF7/77-158   AC A0A1S3ANF7
#=GS A0A1S3ANF7/77-158   OS Erinaceus europaeus
#=GS A0A1S3ANF7/77-158   DE intestine-specific homeobox
#=GS A0A1S3ANF7/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus; Erinaceus europaeus; 
#=GS F7CV34/81-161       AC F7CV34
#=GS F7CV34/81-161       OS Equus caballus
#=GS F7CV34/81-161       DE Uncharacterized protein
#=GS F7CV34/81-161       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Laurasiatheria; Perissodactyla; Equidae; Equus; Equus; Equus caballus; 
#=GS A0A1U7QNU2/73-153   AC A0A1U7QNU2
#=GS A0A1U7QNU2/73-153   OS Mesocricetus auratus
#=GS A0A1U7QNU2/73-153   DE intestine-specific homeobox isoform X1
#=GS A0A1U7QNU2/73-153   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Mesocricetus; Mesocricetus auratus; 
#=GS A0A2K5PC34/76-154   AC A0A2K5PC34
#=GS A0A2K5PC34/76-154   OS Cebus capucinus imitator
#=GS A0A2K5PC34/76-154   DE Uncharacterized protein
#=GS A0A2K5PC34/76-154   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Cebinae; Cebus; Cebus capucinus; Cebus capucinus imitator; 
#=GS A0A0D9R797/132-213  AC A0A0D9R797
#=GS A0A0D9R797/132-213  OS Chlorocebus sabaeus
#=GS A0A0D9R797/132-213  DE Uncharacterized protein
#=GS A0A0D9R797/132-213  DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Chlorocebus; Chlorocebus sabaeus; 
#=GS A0A2K5C9N6/77-158   AC A0A2K5C9N6
#=GS A0A2K5C9N6/77-158   OS Aotus nancymaae
#=GS A0A2K5C9N6/77-158   DE Uncharacterized protein
#=GS A0A2K5C9N6/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Aotidae; Aotus; Aotus nancymaae; 
#=GS F1M478/72-152       AC F1M478
#=GS F1M478/72-152       OS Rattus norvegicus
#=GS F1M478/72-152       DE Intestine-specific homeobox
#=GS F1M478/72-152       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Muridae; Murinae; Rattus; Rattus norvegicus; 
#=GS F7GPV3/77-159       AC F7GPV3
#=GS F7GPV3/77-159       OS Callithrix jacchus
#=GS F7GPV3/77-159       DE Intestine specific homeobox
#=GS F7GPV3/77-159       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix; Callithrix jacchus; 
#=GS A0A2K6M9H6/65-146   AC A0A2K6M9H6
#=GS A0A2K6M9H6/65-146   OS Rhinopithecus bieti
#=GS A0A2K6M9H6/65-146   DE Uncharacterized protein
#=GS A0A2K6M9H6/65-146   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus bieti; 
#=GS A0A2I2YIM0/77-158   AC A0A2I2YIM0
#=GS A0A2I2YIM0/77-158   OS Gorilla gorilla gorilla
#=GS A0A2I2YIM0/77-158   DE Intestine specific homeobox
#=GS A0A2I2YIM0/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Gorilla; Gorilla gorilla; Gorilla gorilla gorilla; 
#=GS A0A2R8ZKJ5/77-158   AC A0A2R8ZKJ5
#=GS A0A2R8ZKJ5/77-158   OS Pan paniscus
#=GS A0A2R8ZKJ5/77-158   DE Uncharacterized protein
#=GS A0A2R8ZKJ5/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan paniscus; 
#=GS A0A096NJQ7/77-158   AC A0A096NJQ7
#=GS A0A096NJQ7/77-158   OS Papio anubis
#=GS A0A096NJQ7/77-158   DE Uncharacterized protein
#=GS A0A096NJQ7/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Papio; Papio anubis; 
#=GS A0A2K5U076/77-158   AC A0A2K5U076
#=GS A0A2K5U076/77-158   OS Macaca fascicularis
#=GS A0A2K5U076/77-158   DE Uncharacterized protein
#=GS A0A2K5U076/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A2K5LAF4/77-158   AC A0A2K5LAF4
#=GS A0A2K5LAF4/77-158   OS Cercocebus atys
#=GS A0A2K5LAF4/77-158   DE Uncharacterized protein
#=GS A0A2K5LAF4/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Cercocebus; Cercocebus atys; 
#=GS A0A2K6AHW7/77-158   AC A0A2K6AHW7
#=GS A0A2K6AHW7/77-158   OS Mandrillus leucophaeus
#=GS A0A2K6AHW7/77-158   DE Uncharacterized protein
#=GS A0A2K6AHW7/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Mandrillus; Mandrillus leucophaeus; 
#=GS A0A2J8QPA3/77-158   AC A0A2J8QPA3
#=GS A0A2J8QPA3/77-158   OS Pan troglodytes
#=GS A0A2J8QPA3/77-158   DE ISX isoform 1
#=GS A0A2J8QPA3/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Hominoidea; Hominidae; Homininae; Pan; Pan troglodytes; 
#=GS A0A2K6P360/77-158   AC A0A2K6P360
#=GS A0A2K6P360/77-158   OS Rhinopithecus roxellana
#=GS A0A2K6P360/77-158   DE Uncharacterized protein
#=GS A0A2K6P360/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Colobinae; Rhinopithecus; Rhinopithecus roxellana; 
#=GS A0A2K6DWP0/77-158   AC A0A2K6DWP0
#=GS A0A2K6DWP0/77-158   OS Macaca nemestrina
#=GS A0A2K6DWP0/77-158   DE Uncharacterized protein
#=GS A0A2K6DWP0/77-158   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca nemestrina; 
#=GS G7PFA3/77-158       AC G7PFA3
#=GS G7PFA3/77-158       OS Macaca fascicularis
#=GS G7PFA3/77-158       DE Uncharacterized protein
#=GS G7PFA3/77-158       DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Primates; Haplorrhini; Simiiformes; Catarrhini; Cercopithecoidea; Cercopithecidae; Cercopithecinae; Macaca; Macaca fascicularis; 
#=GS A0A1U8CET6/73-156   AC A0A1U8CET6
#=GS A0A1U8CET6/73-156   OS Mesocricetus auratus
#=GS A0A1U8CET6/73-156   DE intestine-specific homeobox isoform X2
#=GS A0A1U8CET6/73-156   DR ORG; Eukaryota; Metazoa; Chordata; Craniata; Sarcopterygii; Mammalia; Euarchontoglires; Rodentia; Myomorpha; Cricetidae; Cricetinae; Mesocricetus; Mesocricetus auratus; 
#=GF SQ 29
A1A546/72-151               QEEKKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKSGNLSAPQQPGEA-----
Q2M1V0/77-158               -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNLGAPQQLSEASVA--
B1Q2M1/72-151               QEEKKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKSGNLSAPQQPGEA-----
W4YLW5/69-144               WSDSKRNRRIRTTFNPEQLRELENVFQVTHYPDVKTRDELSSKTSLPEQRIQIWFQNRRAKWRKFERLGNFGGLEE---------
C3ZM10/139-203              ---VKRMRRVRTTFSAEQLKALEDVFKVTHYPDVHTREQLARKTKLPEARVQIWFQNRRAKWRKYEKL-----------------
W5NIR5/94-159               --DKKGRRRIRTTFTPEQLEEMEKIFQITHYPDVYTRDELASKTKLPEGRVQIWFQNRRAKWRKHEKL-----------------
G1KL01/1-69                 -DNKKGKRRIRTTFTADQLQELEQIFQVTHYPDVNTRNQLAAKINLPETRVQIWFQNQRAKWRKHERFGN---------------
F7FWM8/68-131               -----GKRRIRTTFTTEQLQELEKTFQFTHYPDIHIRNELATKINLPEARIQIWFQNQRAKWRKHEKLS----------------
F1P729/70-149               QEERKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRNQLAARINLPEARVQIWFQNQRAKWRKQ-KTGSLGASQQLSEAG----
A0A1S3ANF7/77-158           QEERKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRNQLAARINLPEARVQIWFQNQRAKWRKQK---NLGTPQQPSEADSVPT
F7CV34/81-161               -GERKSKRRVRTTFTTEQLQELEKIFHFTHYPDVHIRNQLAARINLPEARVQIWFQNQRAKWRKQEKISSLGAPQKLSEANM---
A0A1U7QNU2/73-153           QEEKRNKRRVRTTFTTEQLQELEKLFRFTHYPDIHVRTQLASRINLPEARVQIWFQNQRAKWRKQEKVGSLGASQQPGEAS----
A0A2K5PC34/76-154           QEGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHTRNQLAARINLPEARV----QNQRAKRRKQEKTGSLGAPQKLSEASMA--
A0A0D9R797/132-213          -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDIHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A2K5C9N6/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHTRSQLAARINLPEARVQIWFQNQRAKRRKQEKTGNLGAPQKLSEASMA--
F1M478/72-152               QEERKNKRRVRTTFTTEQLQELEKLFHFTHYPDIHVRSQLASRINLPEARVQIWFQNQRAKWRKQEKSGSLSAPQQPGSCT----
F7GPV3/77-159               -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHTRSQLAARINLPEARVQIWFQNQRAKWRKQEKTGSLGAPQKLSEDSMAL-
A0A2K6M9H6/65-146           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A2I2YIM0/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNLGAPQQLSEASVA--
A0A2R8ZKJ5/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNLGGPQQLSEASVA--
A0A096NJQ7/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A2K5U076/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKRRKQERIGSLGAPQQLSEASVA--
A0A2K5LAF4/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A2K6AHW7/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A2J8QPA3/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGNLGGPQQLSEASVA--
A0A2K6P360/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A2K6DWP0/77-158           -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
G7PFA3/77-158               -EGRKSKRRVRTTFTTEQLHELEKIFHFTHYPDVHIRSQLAARINLPEARVQIWFQNQRAKWRKQEKIGSLGAPQQLSEASVA--
A0A1U8CET6/73-156           QEEKRNKRRVRTTFTTEQLQELEKLFRFTHYPDIHVRTQLASRINLPEARVQIWFQNQRAKWRKQEKVGSLGASQQPGEARSCA-
#=GC scorecons              0435746997999976899588966966999997759479857769996988888997999799687453443343223321100
#=GC scorecons_70           ____*_*************_****_*_********_*_***_**********************_**__________________
#=GC scorecons_80           ____*__********_***_***__*__*******_*_***_*__***_***************_**__________________
#=GC scorecons_90           _______**_****__***__**__*__*****___*__**____***_********_***_**_____________________
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