# STOCKHOLM 1.0
#=GF ID 1.10.10.60/FF/000343
#=GF DE Sigma-54-dependent Fis family transcriptional regulator
#=GF AC 1.10.10.60/FF/000343
#=GF TP FunFam
#=GF DR CATH: v4.3
#=GF DR DOPS: 66.895
#=GS Q5DYQ0/448-490      AC Q5DYQ0
#=GS Q5DYQ0/448-490      OS Aliivibrio fischeri ES114
#=GS Q5DYQ0/448-490      DE Sigma-54 dependent transcriptional regulator
#=GS Q5DYQ0/448-490      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio fischeri; 
#=GS Q5DYQ0/448-490      DR GO; GO:0000976; GO:0001216; GO:0032993; GO:0045893; 
#=GS Q9KT84/399-442      AC Q9KT84
#=GS Q9KT84/399-442      OS Vibrio cholerae O1 biovar El Tor str. N16961
#=GS Q9KT84/399-442      DE Regulatory protein LuxO
#=GS Q9KT84/399-442      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS Q9KT84/399-442      DR GO; GO:0000156; GO:0000160; GO:0003700; GO:0006355; 
#=GS Q5E6B4/427-471      AC Q5E6B4
#=GS Q5E6B4/427-471      OS Aliivibrio fischeri ES114
#=GS Q5E6B4/427-471      DE Autoinducer repressor protein LuxO
#=GS Q5E6B4/427-471      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio fischeri; 
#=GS Q5E6B4/427-471      DR GO; GO:0008218; 
#=GS Q1ZS18/423-467      AC Q1ZS18
#=GS Q1ZS18/423-467      OS Photobacterium angustum S14
#=GS Q1ZS18/423-467      DE Putative repressor protein luxO
#=GS Q1ZS18/423-467      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium angustum; 
#=GS Q1ZS18/423-467      DR GO; GO:0042802; 
#=GS A7MVC2/399-442      AC A7MVC2
#=GS A7MVC2/399-442      OS Vibrio campbellii ATCC BAA-1116
#=GS A7MVC2/399-442      DE Luminescence regulatory protein LuxO
#=GS A7MVC2/399-442      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio campbellii; 
#=GS A7MVC2/399-442      DR GO; GO:0045893; 
#=GS P0C5S5/399-442      AC P0C5S5
#=GS P0C5S5/399-442      OS Vibrio harveyi
#=GS P0C5S5/399-442      DE Luminescence regulatory protein LuxO
#=GS P0C5S5/399-442      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio harveyi; 
#=GS P0C5S5/399-442      DR GO; GO:0008218; 
#=GS A0A1B9PMP3/432-475  AC A0A1B9PMP3
#=GS A0A1B9PMP3/432-475  OS Aliivibrio sp. 1S175
#=GS A0A1B9PMP3/432-475  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A1B9PMP3/432-475  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio sp. 1S175; 
#=GS A0A1Y6MAI3/440-481  AC A0A1Y6MAI3
#=GS A0A1Y6MAI3/440-481  OS Photobacterium sp. CECT 9192
#=GS A0A1Y6MAI3/440-481  DE Regulatory protein LuxO
#=GS A0A1Y6MAI3/440-481  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium sp. CECT 9192; 
#=GS A0A090I7P0/436-479  AC A0A090I7P0
#=GS A0A090I7P0/436-479  OS Aliivibrio wodanis
#=GS A0A090I7P0/436-479  DE Two-component response regulator, transcriptional regulatory protein LuxO
#=GS A0A090I7P0/436-479  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio wodanis; 
#=GS B6EQT2/447-490      AC B6EQT2
#=GS B6EQT2/447-490      OS Aliivibrio salmonicida LFI1238
#=GS B6EQT2/447-490      DE Two-component response regulator,transcriptional regulatory protein LuxO
#=GS B6EQT2/447-490      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Aliivibrio; Aliivibrio salmonicida; 
#=GS L8J8A6/427-471      AC L8J8A6
#=GS L8J8A6/427-471      OS Photobacterium marinum
#=GS L8J8A6/427-471      DE Regulatory protein LuxO
#=GS L8J8A6/427-471      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium marinum; 
#=GS A0A0B9G9W2/429-473  AC A0A0B9G9W2
#=GS A0A0B9G9W2/429-473  OS Photobacterium gaetbulicola
#=GS A0A0B9G9W2/429-473  DE ATPase AAA
#=GS A0A0B9G9W2/429-473  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium gaetbulicola; 
#=GS A0A0J1GIB6/435-479  AC A0A0J1GIB6
#=GS A0A0J1GIB6/435-479  OS Photobacterium aphoticum
#=GS A0A0J1GIB6/435-479  DE ATPase AAA
#=GS A0A0J1GIB6/435-479  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium aphoticum; 
#=GS A0A1Y6KXG8/425-469  AC A0A1Y6KXG8
#=GS A0A1Y6KXG8/425-469  OS Photobacterium aquimaris
#=GS A0A1Y6KXG8/425-469  DE Luminescence regulatory protein LuxO
#=GS A0A1Y6KXG8/425-469  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium aquimaris; 
#=GS A0A2T3MUJ4/433-475  AC A0A2T3MUJ4
#=GS A0A2T3MUJ4/433-475  OS Photobacterium lipolyticum
#=GS A0A2T3MUJ4/433-475  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A2T3MUJ4/433-475  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium lipolyticum; 
#=GS A0A0J1HGL3/426-470  AC A0A0J1HGL3
#=GS A0A0J1HGL3/426-470  OS Photobacterium ganghwense
#=GS A0A0J1HGL3/426-470  DE ATPase AAA
#=GS A0A0J1HGL3/426-470  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium ganghwense; 
#=GS A0A0F5VGZ3/427-470  AC A0A0F5VGZ3
#=GS A0A0F5VGZ3/427-470  OS Photobacterium halotolerans
#=GS A0A0F5VGZ3/427-470  DE ATPase AAA
#=GS A0A0F5VGZ3/427-470  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium halotolerans; 
#=GS A0A0D8Q5E1/426-470  AC A0A0D8Q5E1
#=GS A0A0D8Q5E1/426-470  OS Photobacterium iliopiscarium
#=GS A0A0D8Q5E1/426-470  DE ATPase AAA
#=GS A0A0D8Q5E1/426-470  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium iliopiscarium; 
#=GS A0A1Q9GL16/427-471  AC A0A1Q9GL16
#=GS A0A1Q9GL16/427-471  OS Photobacterium proteolyticum
#=GS A0A1Q9GL16/427-471  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A1Q9GL16/427-471  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium proteolyticum; 
#=GS A0A0J1GZ13/426-470  AC A0A0J1GZ13
#=GS A0A0J1GZ13/426-470  OS Photobacterium aquae
#=GS A0A0J1GZ13/426-470  DE ATPase AAA
#=GS A0A0J1GZ13/426-470  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium aquae; 
#=GS A0A2T3NXU5/433-477  AC A0A2T3NXU5
#=GS A0A2T3NXU5/433-477  OS Photobacterium sanctipauli
#=GS A0A2T3NXU5/433-477  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A2T3NXU5/433-477  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium sanctipauli; 
#=GS A0A0B7J9D7/426-470  AC A0A0B7J9D7
#=GS A0A0B7J9D7/426-470  OS Photobacterium phosphoreum ANT-2200
#=GS A0A0B7J9D7/426-470  DE Regulatory protein LuxO
#=GS A0A0B7J9D7/426-470  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium phosphoreum; 
#=GS A0A2T3KH94/426-470  AC A0A2T3KH94
#=GS A0A2T3KH94/426-470  OS Photobacterium kishitanii
#=GS A0A2T3KH94/426-470  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A2T3KH94/426-470  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium kishitanii; 
#=GS F0LVB4/413-456      AC F0LVB4
#=GS F0LVB4/413-456      OS Vibrio furnissii NCTC 11218
#=GS F0LVB4/413-456      DE LuxO repressor protein
#=GS F0LVB4/413-456      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio furnissii; 
#=GS A0A2V1LTY3/398-442  AC A0A2V1LTY3
#=GS A0A2V1LTY3/398-442  OS Vibrio sp. T21
#=GS A0A2V1LTY3/398-442  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A2V1LTY3/398-442  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. T21; 
#=GS A0A366A3J4/399-442  AC A0A366A3J4
#=GS A0A366A3J4/399-442  OS Vibrio sp. 2017V-1124
#=GS A0A366A3J4/399-442  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A366A3J4/399-442  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. 2017V-1124; 
#=GS A0A366ACJ2/399-442  AC A0A366ACJ2
#=GS A0A366ACJ2/399-442  OS Vibrio sp. 2017V-1105
#=GS A0A366ACJ2/399-442  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A366ACJ2/399-442  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio sp. 2017V-1105; 
#=GS M1KP54/413-456      AC M1KP54
#=GS M1KP54/413-456      OS Vibrio fluvialis
#=GS M1KP54/413-456      DE Autoinducer repressor protein
#=GS M1KP54/413-456      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio fluvialis; 
#=GS A0A2R9VNB6/398-442  AC A0A2R9VNB6
#=GS A0A2R9VNB6/398-442  OS Vibrio parahaemolyticus
#=GS A0A2R9VNB6/398-442  DE Sigma-54-dependent Fis family transcriptional regulator
#=GS A0A2R9VNB6/398-442  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS A0A0C5WNX1/429-473  AC A0A0C5WNX1
#=GS A0A0C5WNX1/429-473  OS Photobacterium gaetbulicola Gung47
#=GS A0A0C5WNX1/429-473  DE Putative repressor protein luxO
#=GS A0A0C5WNX1/429-473  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium gaetbulicola; 
#=GS A1IGB8/426-470      AC A1IGB8
#=GS A1IGB8/426-470      OS Photobacterium phosphoreum
#=GS A1IGB8/426-470      DE LuxO
#=GS A1IGB8/426-470      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Photobacterium; Photobacterium phosphoreum; 
#=GS Q87MX7/398-442      AC Q87MX7
#=GS Q87MX7/398-442      OS Vibrio parahaemolyticus RIMD 2210633
#=GS Q87MX7/398-442      DE Regulatory protein LuxO
#=GS Q87MX7/398-442      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio harveyi group; Vibrio parahaemolyticus; 
#=GS A0A0H3AGS8/399-442  AC A0A0H3AGS8
#=GS A0A0H3AGS8/399-442  OS Vibrio cholerae O395
#=GS A0A0H3AGS8/399-442  DE LuxO repressor protein
#=GS A0A0H3AGS8/399-442  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS C3LTR8/399-442      AC C3LTR8
#=GS C3LTR8/399-442      OS Vibrio cholerae M66-2
#=GS C3LTR8/399-442      DE LuxO repressor protein
#=GS C3LTR8/399-442      DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GS A0A0E4CK15/399-442  AC A0A0E4CK15
#=GS A0A0E4CK15/399-442  OS Vibrio cholerae
#=GS A0A0E4CK15/399-442  DE ATPase AAA
#=GS A0A0E4CK15/399-442  DR ORG; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; 
#=GF SQ 35
Q5DYQ0/448-490              -SVIRPMADIEREVIQNAIDHCDGNVLNAAVLLELSPSTLYRK-K
Q9KT84/399-442              -HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ
Q5E6B4/427-471              QETIIPLWQSEKQIIENAIELCGGNIPQAAKQLEVSPSTIYRKLQ
Q1ZS18/423-467              KNKIEPLWVVEKRAIQWAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A7MVC2/399-442              -SDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQ
P0C5S5/399-442              -SDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQ
A0A1B9PMP3/432-475          TSTIRPMADIEREVIQNAIDHCDGNVLNAAVLLELSPSTLYRK-K
A0A1Y6MAI3/440-481          --LIRPMADIEREVIENAIDYCEGNVLNAAVLLELSPSTLYRK-K
A0A090I7P0/436-479          TNSIRPMADIEREAIQNAIDHCDGNVLNAAVLLELSPSTLYRK-K
B6EQT2/447-490              HSAIRPMADIEREVIQNAIDHCDGNVLNAAVLLELSPSTLYRK-K
L8J8A6/427-471              KSQIEPLWVVEKRAIQAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A0B9G9W2/429-473          KSQVEPLWIVEKRAIQAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A0J1GIB6/435-479          KSQVEPLWVVEKRAIQAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A1Y6KXG8/425-469          KDKIEPLWIVEKRAIQWAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A2T3MUJ4/433-475          --TIEPLWVVEKRAIQAAIDVCNGNIPRAAGLLEVSPSTIYRKLQ
A0A0J1HGL3/426-470          KSQVEPLWVVEKRAIQAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A0F5VGZ3/427-470          -SQIEPLWKVEKRTIQSAIAACDGNIPRAAGLLEVSPSTIYRKLQ
A0A0D8Q5E1/426-470          KDKIEPLWIVEKRAIQWAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A1Q9GL16/427-471          KSQIEPLWVVEKRAIQAAIDACEGNIPRAAGLLEVSPSTIYRKLQ
A0A0J1GZ13/426-470          KSQVEPLWLVEKRTIQAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A2T3NXU5/433-477          KSQIEPLWIVEKRAIEAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A0B7J9D7/426-470          KDKIEPLWIVEKRAIQWAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A0A2T3KH94/426-470          KDKIEPLWIVEKRAIQWAIDACDGNIPRAAGLLEVSPSTIYRKLQ
F0LVB4/413-456              -HEIFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQ
A0A2V1LTY3/398-442          VSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQ
A0A366A3J4/399-442          -HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ
A0A366ACJ2/399-442          -HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ
M1KP54/413-456              -HEIFPLWMTEKQAIEKAIEACDGNIPRAAGYLDVSPSTIYRKLQ
A0A2R9VNB6/398-442          VSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQ
A0A0C5WNX1/429-473          KSQVEPLWIVEKRAIQAAIDACDGNIPRAAGLLEVSPSTIYRKLQ
A1IGB8/426-470              KDKIEPLWIVEKRAIQWAIDACDGNIPRAAGLLEVSPSTIYRKLQ
Q87MX7/398-442              VSEIMPLWMTEKMAIEQAIEACDGNIPRAAGYLDVSPSTIYRKLQ
A0A0H3AGS8/399-442          -HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ
C3LTR8/399-442              -HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ
A0A0E4CK15/399-442          -HEIFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQ
#=GC scorecons              143839754597469639965979976699459779999799957
#=GC scorecons_70           ___*_**___**_***_***_*********__***********_*
#=GC scorecons_80           ___*_**___**__*__**__*****__**__**_****_***__
#=GC scorecons_90           ___*_*____*___*__**__*_**___**__*__****_***__
//